View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7573_high_1 (Length: 716)
Name: NF7573_high_1
Description: NF7573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7573_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 651; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 13 - 699
Target Start/End: Complemental strand, 20003906 - 20003220
Alignment:
| Q |
13 |
agcagagacgacccgagaattttgagcagtgtacaccatatattttttggtttccatgagctttataaaaagatcgctaatccccccgactctaaatatt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20003906 |
agcagagacgacccgagaattttgagcagtgtacaccatatattttttggtttccatgagctttataaaaagatcgctaatccccccgactctaaatatt |
20003807 |
T |
|
| Q |
113 |
cacagttagagcatacatctaaaaaatagttttcaagctctcaaaaatgagaattgttttcctcttcttaggaaaaaaggatgggttatttcttgctttc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20003806 |
cacagttagagcatacatctaaaaaatagttttcaagctctcaaaaatgagaattgttttcctcttcttaggaaaaaaggatgggttatttcttgctttc |
20003707 |
T |
|
| Q |
213 |
tatttccattttcctctcgcacattcttttatttggctatgaatgagttatgattagtattgatgccaacattttgaaacccaactgtctatagaaaagt |
312 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20003706 |
tatttccattttcctctcgcacgttcttttatttggctatgaatgagttatgattagtattgatgccaacattttgaaacccaactgtctatagaaaagt |
20003607 |
T |
|
| Q |
313 |
tttggttgcttatttatgtttttgaattttcataaagctcacttccagcagcagtttgctaacattttcttaagtccaattgccttatgtcaaattagta |
412 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20003606 |
tttagttgcttatttatgtttttgaattttcataaagctcacttccagcagcagtttgctaacattttcttaagtccaattgccttatgtcaaatcagta |
20003507 |
T |
|
| Q |
413 |
actcgataatacaagacggatactccacaatggctcagcaactagtatgagagttatccgatcttcagataaagtctggacaatcttcccctacattctt |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
20003506 |
actcgataatacaagacggatactccacaatggctcagcaactagtatgagagttatccgatcttcagataaagtccggacaatcttccccgacattctt |
20003407 |
T |
|
| Q |
513 |
catgtaaagtccagaggatcctccccagcatcttctcattacaaggtctggaagttattccccgacatttaattcggtcattcagattctactcccagct |
612 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20003406 |
catgtaaagtctggatgatcctccccagcatcttctcattacaaggtctggaagttattccccgacatttaattcggtcattcagattctactcccagct |
20003307 |
T |
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| Q |
613 |
cttcagcttcaatgagagacttctgacatcatttatgacacgactcatcttattaccaagactagatgatcttccctagaaaatctt |
699 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20003306 |
cttcagcttcaatgagagacttctgacatcatttatgacacgactcatcttattacgaagactagatgatcttccctagaaaatctt |
20003220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 2e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 45 - 220
Target Start/End: Complemental strand, 47489479 - 47489304
Alignment:
| Q |
45 |
acaccatatattttttggtttccatgagctttataaaaagatcgctaatccccccgactctaaatattcacagttagagcatacatctaaaaaatagttt |
144 |
Q |
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||||| |||||||||| || || ||||||||||||||||||||| || ||||| || |||||| ||| || |||||||||||||||||||||||||||| |
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| T |
47489479 |
acaccgtatatttttttgtctcaatgagctttataaaaagatcgtcaacccccctgattctaaaaattaacggttagagcatacatctaaaaaatagttt |
47489380 |
T |
|
| Q |
145 |
tcaagctctcaaaaatgagaattgttttcctcttcttaggaaaaaaggat-gggttatttcttgctttctatttcca |
220 |
Q |
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||| ||||| |||||| ||| ||||||||||||||||| |||||| ||| |||||||||||||||||||||||||| |
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| T |
47489379 |
tcaggctctaaaaaat-agacttgttttcctcttcttataaaaaaaagatggggttatttcttgctttctatttcca |
47489304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 327 - 426
Target Start/End: Complemental strand, 47489260 - 47489161
Alignment:
| Q |
327 |
tatgtttttgaattttcataaagctcacttccagcagcagtttgctaacattttcttaagtccaattgccttatgtcaaattagtaactcgataatacaa |
426 |
Q |
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|||||||||| ||||| |||||||||||||| | ||| ||||| ||||| ||||| | |||||||| |||| |||| |||||||| | |||||||||| |
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| T |
47489260 |
tatgtttttgttttttcttaaagctcacttcctggagctatttgccaacatattctttaatccaattgtcttacgtcatattagtaattggataatacaa |
47489161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 244 - 351
Target Start/End: Original strand, 40711530 - 40711636
Alignment:
| Q |
244 |
tttggctatgaatgagttatgattagtattgatgccaacattttgaaacccaactgtctatagaaaagttttggttgcttatttatgtttttgaattttc |
343 |
Q |
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||||||| ||||||| |||||| ||||||||| ||||||||| |||||||||| || | |||| |||||||| ||||||||||| ||| | || |||||| |
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| T |
40711530 |
tttggctgtgaatgaattatgactagtattgacgccaacattctgaaacccaattgcc-ataggaaagtttttgttgcttatttgtgtatgtgtattttc |
40711628 |
T |
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| Q |
344 |
ataaagct |
351 |
Q |
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||||||| |
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| T |
40711629 |
ttaaagct |
40711636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 33800830 - 33800775
Alignment:
| Q |
166 |
ttgttttcctcttcttaggaaaaaaggatggg-ttatttcttgctttctatttcca |
220 |
Q |
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|||||||||||||||| |||||| |||||| ||||||||||||||||||||||| |
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| T |
33800830 |
ttgttttcctcttcttctaaaaaaatgatggggttatttcttgctttctatttcca |
33800775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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