View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7573_high_11 (Length: 301)
Name: NF7573_high_11
Description: NF7573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7573_high_11 |
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| [»] chr8 (3 HSPs) |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 24939392 - 24939517
Alignment:
| Q |
176 |
gaaaaaggaacaaaaatcaccaccttactccacccacccttccttcccttcctatcattggacacattcaccttctttctaagcttctccaccaaagttt |
275 |
Q |
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| T |
24939392 |
gaaaaaggaacaaaaatcaccaccttactccacccacccctccttcccttcctatcattggacacattcaccttctttctaagcttctccaccaaagttt |
24939491 |
T |
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| Q |
276 |
tcacaacctttcaattcattatggac |
301 |
Q |
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| T |
24939492 |
tcacaacctttcaattcattatggac |
24939517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 24939312 - 24939395
Alignment:
| Q |
15 |
cacacacgagtcataaaactcaaaaccaaccaatattgcaatttgcca-nnnnnnncttccaaaattttcaagcatggctgaaa |
97 |
Q |
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| T |
24939312 |
cacacacgagtcataaaactcaaaaccaaccaatattgcaatttgccattttttttcttccaaaattttcaagcatggctgaaa |
24939395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 199 - 301
Target Start/End: Original strand, 25168034 - 25168136
Alignment:
| Q |
199 |
cttactccacccacccttccttcccttcctatcattggacacattcaccttctttctaagcttctccaccaaagttttcacaacctttcaattcattatg |
298 |
Q |
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| T |
25168034 |
cttactccacccacccctccttccctacctatcattggacattgtcaccttatatctaagtttccccacaaaagttttcataagctttcaattcaatatg |
25168133 |
T |
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| Q |
299 |
gac |
301 |
Q |
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| T |
25168134 |
gac |
25168136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 265 - 301
Target Start/End: Original strand, 10382 - 10418
Alignment:
| Q |
265 |
caccaaagttttcacaacctttcaattcattatggac |
301 |
Q |
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| T |
10382 |
caccaaagttttcacaagctttcaattcaatatggac |
10418 |
T |
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