View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7573_high_13 (Length: 296)
Name: NF7573_high_13
Description: NF7573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7573_high_13 |
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| [»] scaffold0187 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 290
Target Start/End: Complemental strand, 42185789 - 42185505
Alignment:
| Q |
7 |
gtatttacatactacggttcagattacaacgttacccttaatcagtaactatgcgctgtactcaacggtagctatagtttgtgctatcaatcccaaggta |
106 |
Q |
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| T |
42185789 |
gtatttacatactaaggttcagattacaacgttacccttaatcagtaactatgcgctgtactcaacggtagctatagtttgtgctatcaatcccaaggta |
42185690 |
T |
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| Q |
107 |
ggaaactttnnnnnnntta-ttttgagttttgacttacattgttaagggtttcatatccaagattagcatcttcaagtgccctctttcccgcaactaaac |
205 |
Q |
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| T |
42185689 |
ggaaactttaaaaaaattacttttgagttttgacttacattgttaagggtttcatatccaagattagcatcttcaagtgccctctttcccgcaactaaac |
42185590 |
T |
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| Q |
206 |
aatatttcatgcaatcatcgaggcaccgatcagtcttgccatcaatgtaaccttttgaagggaaatcgcgtatctgaccaccaaa |
290 |
Q |
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| T |
42185589 |
aatatttcatgcaatcatcgaggcaccgatcagtcttgccgtcaatgtaaccttttgaagagaaatcgcgtatctgaccaccaaa |
42185505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 134 - 290
Target Start/End: Complemental strand, 42195417 - 42195261
Alignment:
| Q |
134 |
tttgacttacattgttaagggtttcatatccaagattagcatcttcaagtgccctctttcccgcaactaaacaatatttcatgcaatcatcgaggcaccg |
233 |
Q |
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| T |
42195417 |
tttgacttacattgttaaggacttcatttccaagattagcatcttcaagggccctcttgcctgcaactaaacaatatttcaagcaatcatcgaggcgccg |
42195318 |
T |
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| Q |
234 |
atcagtcttgccatcaatgtaaccttttgaagggaaatcgcgtatctgaccaccaaa |
290 |
Q |
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| T |
42195317 |
atcattcttaccatcaatgtaaccttttgaagagaaatcgcgtatctgaccaccaaa |
42195261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 133 - 290
Target Start/End: Complemental strand, 42201375 - 42201218
Alignment:
| Q |
133 |
ttttgacttacattgttaagggtttcatatccaagattagcatcttcaagtgccctctttcccgcaactaaacaatatttcatgcaatcatcgaggcacc |
232 |
Q |
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| T |
42201375 |
ttttgacttaccttgttaaggacttcatatccaagattaacatcttcaagtgccctcttacctgcaactaaagaatacctccagcaattatcgaggcgct |
42201276 |
T |
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| Q |
233 |
gatcagtcttgccatcaatgtaaccttttgaagggaaatcgcgtatctgaccaccaaa |
290 |
Q |
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| T |
42201275 |
ggtcattcttggaatcaatataaccttctgaggagaaatcacgtatctgaccaccaaa |
42201218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 1809 - 1849
Alignment:
| Q |
7 |
gtatttacatactacggttcagattacaacgttacccttaa |
47 |
Q |
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| T |
1809 |
gtatttaaatactacggttcagattacaaaattacccttaa |
1849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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