View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7573_high_15 (Length: 269)
Name: NF7573_high_15
Description: NF7573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7573_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 49169795 - 49170072
Alignment:
| Q |
1 |
aatagaatgattaaactcaaatctggacaaaaaagggaagagatttcaaataagttcaacttcgacagtttgattaaactcaaatctagtattgact--- |
97 |
Q |
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| T |
49169795 |
aatagaatgattaaactcaaatctggacaaaaaagggaagagatttcaaataagttcaacttcgacagtttgattaaactcaaatctagtattgactaaa |
49169894 |
T |
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| Q |
98 |
nnnnnnnnntttaga---------tatcaagctcacatttgactttgagggcgcagaactgaagaaattcattttccgcttttaatgatcttagctcgtc |
188 |
Q |
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| T |
49169895 |
aaaaaaaaaattagatatcaaagatatcaagctcacatttgactttgagggcgcagaactgaagaaattcattttccgcttttaacgatcttagctcgtc |
49169994 |
T |
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| Q |
189 |
tcatttg-aaaactatatatgataataatctttccacccaacataatgagtgagggcagagttgacgaacaccaaact |
265 |
Q |
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| T |
49169995 |
tcatttgaaaaactatatatgataataatctttccacccaacataatgagtgagggcagagttgacgaataccaaact |
49170072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 49180143 - 49180088
Alignment:
| Q |
196 |
aaaactatatatgataataatctttccacccaacataatgagtgagggcagagttg |
251 |
Q |
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| T |
49180143 |
aaaactatatgtgataataatctttctagcaagcataacgagtgagggcagagttg |
49180088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 49169760 - 49169818
Alignment:
| Q |
29 |
aaaaaagggaagagatttcaaataagttcaacttcgacagtttgattaaactcaaatct |
87 |
Q |
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| T |
49169760 |
aaaaaagataagagatttcaaatgagttcaacttcaatagaatgattaaactcaaatct |
49169818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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