View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7573_high_16 (Length: 250)
Name: NF7573_high_16
Description: NF7573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7573_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 32 - 238
Target Start/End: Original strand, 887803 - 888008
Alignment:
| Q |
32 |
cctttcagaatgaacctaacaaatttccatgtttcttaatttggagatagaagttactaatattgaattttatgctacaaggaactttgaatattttatg |
131 |
Q |
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| T |
887803 |
cctttcagaatgaacctaacaaatttccatgtttcttaatttgaagatagaagttactaatattgaattttatgctacaaggaacttcgaatattttatg |
887902 |
T |
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| Q |
132 |
tttatgcaaacatatatagcatgttttgaatnnnnnnnnnnnnnnnnnnnnnntcacttatttgagtttgacataagaagtaatctatatttcaaatttg |
231 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
887903 |
tttatgcaaacatatatagcatgttttgaat-aaaaaaataaaaaataaaaaatcacttatttgagtttgacataagaagtaatctatatttcaaatttg |
888001 |
T |
|
| Q |
232 |
acaaagc |
238 |
Q |
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||||||| |
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| T |
888002 |
acaaagc |
888008 |
T |
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