View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7573_high_17 (Length: 248)
Name: NF7573_high_17
Description: NF7573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7573_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 113881 - 113651
Alignment:
| Q |
1 |
atattttactatagacaaatttgaaggttatcctaacaatctaatttttcatacaatttttgtgttaacagatgatggatctgtttggtgctggggttac |
100 |
Q |
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| T |
113881 |
atattttattatagacaaatttgaaggttatcctaacaatctaatttttcatacaatttttgtgttaacagatgatggatctgtttggtgctggggttac |
113782 |
T |
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| Q |
101 |
aatttatgtatccttaatatatgcttgaattaaattatagaaattactcaattttactttctaaaagtttgatcaactatatactattttatttatctac |
200 |
Q |
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| T |
113781 |
aatttatgtatccttaatatatgcttgaattaaattatagaaattactcaattttactttctaaaagtttgatcaactatatactattttatttatctac |
113682 |
T |
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| Q |
201 |
ttccttaactactgcatggatggtcaacttg |
231 |
Q |
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| T |
113681 |
ttccttaactactgcatggatggtcaacttg |
113651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 51294545 - 51294493
Alignment:
| Q |
68 |
acagatgatggatctgtttggtgctggggttacaatttatgtatccttaatat |
120 |
Q |
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| T |
51294545 |
acagaagatggatctgtttggtgctggggttacaatatatgtatccttaatat |
51294493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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