View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7573_low_10 (Length: 343)
Name: NF7573_low_10
Description: NF7573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7573_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 328
Target Start/End: Original strand, 43333311 - 43333623
Alignment:
| Q |
13 |
aatatcctctaaatattaaatcagtacttgaaagaagctatttctacnnnnnnnttcgaagatttaagtcattcatattcaaataacttccttatcggaa |
112 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43333311 |
aatatcctctaaatattaaattagtacttgaaagaagctatttctacggggg--ttcgaagatttaagtcattcatattcaaataacttccttatcggaa |
43333408 |
T |
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| Q |
113 |
acatgcaagagagtagagacgtttatgaattggttacaatacttagacctttatca---aagccatcaaagatcatgattcaaagacaagaaagaaactt |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43333409 |
acatgcaagagagtagagacgtttatgaattggttacaatacttagacctttacctttcaagccatcaaagatcatgattcaaagacaagaaagaaactt |
43333508 |
T |
|
| Q |
210 |
gcaaagtccttgatgctttgttgatgttccagttgctaaagctggtcatccaacaattgcaatggctagatagatgctttgttggaccaatgtttaacat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
43333509 |
gcaaagtccttgatgctttgttgatgttccagttgctaaagctggtcatccaacaattgcaatggc----tagatgctttgttggaccaatgtttaacat |
43333604 |
T |
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| Q |
310 |
gcttcttgatcttgtaact |
328 |
Q |
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|||||||| |||||||||| |
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| T |
43333605 |
gcttcttggtcttgtaact |
43333623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 231 - 329
Target Start/End: Complemental strand, 46871890 - 46871796
Alignment:
| Q |
231 |
tgatgttccagttgctaaagctggtcatccaacaattgcaatggctagatagatgctttgttggaccaatgtttaacatgcttcttgatcttgtaactg |
329 |
Q |
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||||||| |||||||||||||||||||||| |||| |||||||| ||| |||||| |||||||||||||||||||||| ||| ||||| ||||| |
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| T |
46871890 |
tgatgttgcagttgctaaagctggtcatcctgcaatggcaatggccggat----gctttgctggaccaatgtttaacatgcttgttggtcttggaactg |
46871796 |
T |
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