View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7573_low_11 (Length: 334)
Name: NF7573_low_11
Description: NF7573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7573_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 309
Target Start/End: Original strand, 38126089 - 38126392
Alignment:
| Q |
7 |
ctttcaagttttaggcttataaatttcttgatgaaaattggaaccccaagtttatggttattgttgcccagaagaatcatcacacaaaattcttccaacc |
106 |
Q |
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| T |
38126089 |
ctttcaagttttaggcttgtaaatttcttgatgaaaattggaaccccaagtttatggtgattgttgcccagaagaatcatcacacaaaattcttccaacc |
38126188 |
T |
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| Q |
107 |
tcgatctcaagacaatgtgccacctggtaaacagc---ttatgaagattgtcatagttccattgttttcaatacagtgttggtttctcgtctagctaacc |
203 |
Q |
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| T |
38126189 |
tcgatctccagacaatgtgccacctggtaatcagcttgttctgaagtttgtcatagttccattatttt--atataaagttggtttcatgtctagccaacc |
38126286 |
T |
|
| Q |
204 |
actttttggttttgcaggaactgttgtggacagcaaaatttgtcatcctaggaattatgatttctacatgtgtgctcatgcaggaatgattgtgagtatc |
303 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||||| |
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| T |
38126287 |
tctttttggtattgcaggaactgttgtggacagcaaaatttgccatcctaggaattatgatttttatatgtgtgctcatgctggaatgattgtgagtatc |
38126386 |
T |
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| Q |
304 |
ttctac |
309 |
Q |
| |
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|||||| |
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| T |
38126387 |
ttctac |
38126392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 206 - 309
Target Start/End: Original strand, 38118171 - 38118274
Alignment:
| Q |
206 |
tttttggttttgcaggaactgttgtggacagcaaaatttgtcatcctaggaattatgatttctacatgtgtgctcatgcaggaatgattgtgagtatctt |
305 |
Q |
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|||||||||||||||| ||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38118171 |
tttttggttttgcaggtactgttgtggacaacaaaatctgtcatccccggaattatgatttctacatgtgtgctcatgctggaatgattgtgagtatctt |
38118270 |
T |
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| Q |
306 |
ctac |
309 |
Q |
| |
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|||| |
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| T |
38118271 |
ctac |
38118274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 134
Target Start/End: Original strand, 38117984 - 38118091
Alignment:
| Q |
27 |
aaatttcttgatgaaaattggaaccccaagtttatggttattgttgcccagaagaatcatcacacaaaattcttccaacctcgatctcaagacaatgtgc |
126 |
Q |
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||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||| ||| |||||| || ||||||| |
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| T |
38117984 |
aaatttcttgatgaaaagtggaaccccaaatttctggttattgttgcccagaagaatcatcacacaaagttcttccagcctggatctccggataatgtgc |
38118083 |
T |
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| Q |
127 |
cacctggt |
134 |
Q |
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| T |
38118084 |
ctcctggt |
38118091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 14918500 - 14918810
Alignment:
| Q |
1 |
cttaacctttcaagttttaggcttataaatttcttgatgaaaattggaaccccaagtttatggttattgttgcccagaagaatcatcacacaaaattctt |
100 |
Q |
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||||| ||||||| |||||||||| |||||||||||||||| | ||||||||||||||| || | |||||||||||||||| ||||||||||||||||| |
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| T |
14918500 |
cttaatctttcaaattttaggcttgtaaatttcttgatgaagactggaaccccaagtttttgttgattgttgcccagaagagacatcacacaaaattctt |
14918599 |
T |
|
| Q |
101 |
ccaacctcgatctcaagacaatgtgccacctggtaaacagcttatg---aagattgtcatagttccattgttttcaatacagt---gttggtttctcgtc |
194 |
Q |
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||||||| | || | ||||||||||||||||||| || ||| | | | || ||||||||||||| |||| ||| | | ||||||||| |
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| T |
14918600 |
ccaacctgaaaatcgaaacaatgtgccacctggtaagcaacttgttcttatgtttttcatagttccattattttatatataataatgttggtttca---- |
14918695 |
T |
|
| Q |
195 |
tagctaaccactttttggttttgcaggaactgttgtggacagcaaaatttgtcatcctaggaattatgatttctacatgtgtgctcatgcaggaatgatt |
294 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| |
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| T |
14918696 |
tagctaacctctttttggttttgcaggaactgttgtggacaacaaaatttgtcatcctaggaattatgatttctatatgtgttctcatgcaggaagaatt |
14918795 |
T |
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| Q |
295 |
gtgagtatcttctac |
309 |
Q |
| |
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||||||||||||||| |
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| T |
14918796 |
gtgagtatcttctac |
14918810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 304
Target Start/End: Original strand, 35469008 - 35469099
Alignment:
| Q |
213 |
ttttgcaggaactgttgtggacagcaaaatttgtcatcctaggaattatgatttctacatgtgtgctcatgcaggaatgattgtgagtatct |
304 |
Q |
| |
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|||||||||||||||| | |||| |||||||||||||| || || |||||||||||| | ||||||||||| || ||||| |||||||||| |
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| T |
35469008 |
ttttgcaggaactgttatcgacaataaaatttgtcatccaagaaactatgatttctacctctgtgctcatgctgggatgatagtgagtatct |
35469099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 296
Target Start/End: Complemental strand, 37590882 - 37590833
Alignment:
| Q |
247 |
catcctaggaattatgatttctacatgtgtgctcatgcaggaatgattgt |
296 |
Q |
| |
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||||| || ||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
37590882 |
catccaagaaattacgatttctacatgtgtgctcatgctggaatgattgt |
37590833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 35468828 - 35468901
Alignment:
| Q |
30 |
tttcttgatgaaaattggaaccccaagtttatggttattgttgcccagaagaatcatcacacaaaattcttcca |
103 |
Q |
| |
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||||||||||||||||||| || || ||| |||| |||||||| || ||||| || ||||||| ||||||||| |
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| T |
35468828 |
tttcttgatgaaaattggactccaaaatttgtggtaattgttgctcaaaagaaccaccacacaagattcttcca |
35468901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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