View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7573_low_12 (Length: 330)
Name: NF7573_low_12
Description: NF7573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7573_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 53095455 - 53095163
Alignment:
| Q |
20 |
cagtaccaaaacttttgggcggcgcaactagtagcacaaggcgggtctggtgtaaatagcaatgttatgagggtccaatatcctaattggcgaagtggaa |
119 |
Q |
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| T |
53095455 |
cagtaccaaaacttttgggcggcgcaactagtagcacaaggcgggtctggtgtaaataacaatgttacgagggtccaatatcctaattggcgaagtggaa |
53095356 |
T |
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| Q |
120 |
gacatgaaacttgtgcagtgaatccaggtgcccaagtcatgcttcctcaccattcccttgcatcgctagaatcacttggttccaagataacttcaacctc |
219 |
Q |
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| T |
53095355 |
gacatgaaacttgtgcagtgaatccgggtgcccaagtcatgcttcctcaccattcccttgcatcgctagaatcacttggttccaagataacttcaacctc |
53095256 |
T |
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| Q |
220 |
tgagcaacaaccctttacactcgcctcatcaattccactatctaggatgaatggggtagaagaaagtagaggtaggttccatggtagctgtgc |
312 |
Q |
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| T |
53095255 |
tgagcaacaaccctttacacccgcctcatcaattccactatctaggatgaatggggtagaagaaagtagaggtaggttccatggtagctgtgc |
53095163 |
T |
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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 24578099 - 24578006
Alignment:
| Q |
21 |
agtaccaaaacttttgggcggcgcaactagtagcacaaggcgggtctggtgtaaatagcaatgttatgagggtccaatatcctaattggcgaag |
114 |
Q |
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||||||||| |||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
24578099 |
agtaccaaattttttgggcggtgcgactagtagcacaaggtgggtctggtgtaaatagcaatgttatgagggtccaatatcttaattggcgaag |
24578006 |
T |
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