View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7573_low_13 (Length: 315)
Name: NF7573_low_13
Description: NF7573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7573_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 14645339 - 14645055
Alignment:
| Q |
13 |
aatatatccaacctatccaagctagattagacaaatgcaaaattatcccccatgactcacaagaacaatcaatacccatcattgatttcacaaactggga |
112 |
Q |
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| T |
14645339 |
aatatatccaacctatccaagctagattggactcatgcaaaattatcccccatgactcagaagaacaatcaatacccatcattgatttcacaaactggga |
14645240 |
T |
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| Q |
113 |
tgatccagatgttcaagattcaatttttagtgctgcaactaagttgggtttcttccaaattgtgaatcatggtataccctttaatgttcttgatgattta |
212 |
Q |
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| T |
14645239 |
tgacccagatgttcaagattcaatttttagtgctgcaactaagttgggtttcttccaaattgtgaatcatggtatacccattaacgtccttgatgatttg |
14645140 |
T |
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| Q |
213 |
aaagcttctgtccacaggttttttgaattaccagttgaagagaagaaatctgtgaaagattcaccacctgaagttgtgaggttgt |
297 |
Q |
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| T |
14645139 |
aaagcttctgtccacaagttctttgaattaccagttgaagagaagaaatctgtgaaagattcaccacctgaagttgtgaggttgt |
14645055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 296
Target Start/End: Complemental strand, 14630274 - 14629988
Alignment:
| Q |
13 |
aatatatccaacctatccaagctagattagacaaatgcaaaattatcccccatgactcacaagaacaatcaatacccatcattgatttcacaaactggga |
112 |
Q |
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| T |
14630274 |
aatatatccaacctatccaagctagattggactcatgcaaaattatcccccatgactcagaagaacaatcaatacccatcattgatttcacaaactggga |
14630175 |
T |
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| Q |
113 |
tgatccagatgttcaagattcaatttttagtgctgcaactaagttgggtttcttccaaattgtgaatcatggtataccctttaatgttcttgatgattta |
212 |
Q |
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| T |
14630174 |
tgacccagatgttcaagattcaatttttagtgctgcaactaatttgggtttcttccaaattgtgaatcatggtatacccattaacgtccttgatgatttg |
14630075 |
T |
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| Q |
213 |
aaagcttctgtccacaggttttttgaattaccagttgaagagaagaaatctgtgaaag---attcaccacctgaagttgtgaggttg |
296 |
Q |
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| T |
14630074 |
aaagcttctgtccacaagttctttgaattaccagttgaagagaagaaatctgtgaaagagaattcacctcctgaagttgtgaggttg |
14629988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 41658941 - 41658662
Alignment:
| Q |
17 |
tatccaacctatccaagctagattagacaaatgcaaaattatcccccatgactcacaagaacaatcaatacccatcattgatttcacaaactgggatgat |
116 |
Q |
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| T |
41658941 |
tatccaacctgtcaaagctagattagacaaatgcaaaattattccccaagactcg---gagcaatcaatacccatcattgatttcacaaactgggaagac |
41658845 |
T |
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| Q |
117 |
ccagatgttcaagattcaatttttagtgctgcaactaagttgggtttcttccaaattgtgaatcatggtataccctttaatgttcttgatgatttaaaag |
216 |
Q |
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| T |
41658844 |
atacaagtccaagattccatttttagtgctgcaactaaatggggtttcttccaaattgtgaatcatgggatacccattaatgccgtcgatgatctgaaag |
41658745 |
T |
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| Q |
217 |
cttctgtccacaggttttttgaattaccagttgaagagaagaaatctgtgaaag---attcaccacctgaagttgtgaggttg |
296 |
Q |
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| T |
41658744 |
cttctgtccacaagttctttgaattaccagttgaggagaagaaatctttgaaagagaattcaccacctgatgttgtgaggttg |
41658662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 13845888 - 13845789
Alignment:
| Q |
13 |
aatatatccaacctatccaagctagattagacaaatgcaaaattatcccccatgactcacaagaaca-atcaatacccatcattgatttcacaaactggg |
111 |
Q |
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| T |
13845888 |
aatatattcaacctatcgaagttagaatagacaaatgcaaaattatccctcaagactca----aacatatcaatacccatcattgatttcacaaactggg |
13845793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 13845776 - 13845711
Alignment:
| Q |
158 |
gggtttcttccaaattgtgaatcatggtataccctttaatgttcttgatgatttaaaagcttctgt |
223 |
Q |
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| T |
13845776 |
gggtttcttccaaattgtgaatcatgggatgcctattaatgttcttgatgatctcaaagcttctgt |
13845711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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