View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7573_low_19 (Length: 275)

Name: NF7573_low_19
Description: NF7573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7573_low_19
NF7573_low_19
[»] chr5 (13 HSPs)
chr5 (1-226)||(365411-365636)
chr5 (227-258)||(19705957-19705988)
chr5 (227-257)||(2063733-2063763)
chr5 (227-257)||(13296727-13296757)
chr5 (227-257)||(25258093-25258123)
chr5 (227-257)||(25321883-25321913)
chr5 (227-257)||(28510146-28510176)
chr5 (227-257)||(41666756-41666786)
chr5 (227-257)||(41666992-41667022)
chr5 (227-256)||(12034746-12034775)
chr5 (225-258)||(20510639-20510672)
chr5 (229-257)||(17016398-17016426)
chr5 (229-257)||(27132994-27133022)
[»] chr4 (19 HSPs)
chr4 (225-257)||(22827593-22827625)
chr4 (227-258)||(50543566-50543597)
chr4 (227-257)||(12869262-12869292)
chr4 (227-257)||(17111618-17111648)
chr4 (227-257)||(22231307-22231337)
chr4 (227-257)||(22845446-22845476)
chr4 (227-257)||(22863529-22863559)
chr4 (227-257)||(35788714-35788744)
chr4 (227-257)||(35788949-35788979)
chr4 (227-257)||(40717440-40717470)
chr4 (227-257)||(50543329-50543359)
chr4 (227-257)||(53559289-53559319)
chr4 (227-256)||(40726777-40726806)
chr4 (229-257)||(9685453-9685481)
chr4 (229-257)||(9685687-9685715)
chr4 (229-257)||(14783188-14783216)
chr4 (229-257)||(21498850-21498878)
chr4 (229-257)||(25052907-25052935)
chr4 (229-257)||(54054806-54054834)
[»] chr1 (17 HSPs)
chr1 (225-257)||(26177198-26177230)
chr1 (226-257)||(40079207-40079238)
chr1 (227-257)||(4113005-4113035)
chr1 (227-257)||(20208228-20208258)
chr1 (227-257)||(20208527-20208557)
chr1 (227-257)||(25255366-25255396)
chr1 (227-257)||(29266008-29266038)
chr1 (227-257)||(30369890-30369920)
chr1 (227-257)||(33156788-33156818)
chr1 (227-257)||(35772084-35772114)
chr1 (227-257)||(35772319-35772349)
chr1 (227-257)||(42586438-42586468)
chr1 (228-257)||(4098403-4098432)
chr1 (229-257)||(3169821-3169849)
chr1 (224-256)||(4112536-4112568)
chr1 (229-257)||(17452680-17452708)
chr1 (229-257)||(51589861-51589889)
[»] chr8 (20 HSPs)
chr8 (226-257)||(42846603-42846634)
chr8 (227-257)||(10884119-10884149)
chr8 (227-257)||(20301316-20301346)
chr8 (227-257)||(20301562-20301592)
chr8 (227-257)||(21087948-21087978)
chr8 (227-257)||(21088194-21088224)
chr8 (227-257)||(27205019-27205049)
chr8 (227-257)||(27205117-27205147)
chr8 (227-257)||(27205215-27205245)
chr8 (227-257)||(35682780-35682810)
chr8 (227-257)||(37001519-37001549)
chr8 (227-257)||(39960247-39960277)
chr8 (227-257)||(41790713-41790743)
chr8 (227-256)||(12317102-12317131)
chr8 (229-257)||(19256587-19256615)
chr8 (229-257)||(19256821-19256849)
chr8 (229-257)||(24075307-24075335)
chr8 (229-257)||(28213105-28213133)
chr8 (229-257)||(34653205-34653233)
chr8 (229-257)||(39743584-39743612)
[»] chr7 (15 HSPs)
chr7 (227-258)||(33996310-33996341)
chr7 (227-257)||(4886384-4886414)
chr7 (227-257)||(10882238-10882268)
chr7 (227-257)||(25620191-25620221)
chr7 (227-257)||(40121923-40121953)
chr7 (227-257)||(43688159-43688189)
chr7 (227-256)||(21821862-21821891)
chr7 (227-256)||(22574891-22574920)
chr7 (229-258)||(29469894-29469923)
chr7 (225-257)||(6991810-6991842)
chr7 (229-257)||(29469660-29469688)
chr7 (229-257)||(31257268-31257296)
chr7 (227-255)||(31892444-31892472)
chr7 (229-257)||(34027448-34027476)
chr7 (225-257)||(44874343-44874375)
[»] chr3 (15 HSPs)
chr3 (226-257)||(27086696-27086727)
chr3 (227-257)||(1723075-1723105)
chr3 (227-257)||(4155379-4155409)
chr3 (227-257)||(4155614-4155644)
chr3 (227-257)||(17638289-17638319)
chr3 (227-257)||(24866252-24866282)
chr3 (227-257)||(31317521-31317551)
chr3 (227-257)||(35038193-35038223)
chr3 (227-257)||(54567947-54567977)
chr3 (227-256)||(16239647-16239676)
chr3 (229-257)||(11589840-11589868)
chr3 (229-257)||(21833403-21833431)
chr3 (229-257)||(47702410-47702438)
chr3 (229-257)||(50052540-50052568)
chr3 (225-257)||(50083077-50083109)
[»] chr2 (11 HSPs)
chr2 (227-258)||(28407792-28407823)
chr2 (227-257)||(93626-93656)
chr2 (227-257)||(5711438-5711468)
chr2 (227-257)||(16419557-16419587)
chr2 (227-257)||(17719621-17719651)
chr2 (227-257)||(40379208-40379238)
chr2 (227-257)||(40379443-40379473)
chr2 (227-256)||(19570973-19571002)
chr2 (228-257)||(21591837-21591866)
chr2 (227-256)||(31700744-31700773)
chr2 (229-257)||(19191611-19191639)
[»] scaffold0766 (1 HSPs)
scaffold0766 (227-257)||(6394-6424)
[»] scaffold0692 (1 HSPs)
scaffold0692 (227-257)||(5753-5783)
[»] scaffold0048 (1 HSPs)
scaffold0048 (227-257)||(81897-81927)
[»] chr6 (14 HSPs)
chr6 (227-257)||(4161845-4161875)
chr6 (227-257)||(4223465-4223495)
chr6 (227-257)||(4868576-4868606)
chr6 (227-257)||(4868812-4868842)
chr6 (227-257)||(11721960-11721990)
chr6 (224-257)||(16570214-16570247)
chr6 (228-257)||(30256633-30256662)
chr6 (225-257)||(6623407-6623439)
chr6 (229-257)||(8026444-8026472)
chr6 (229-257)||(8026659-8026687)
chr6 (229-257)||(8566960-8566988)
chr6 (229-257)||(12330180-12330208)
chr6 (229-257)||(12330292-12330320)
chr6 (229-257)||(30256867-30256895)
[»] scaffold0005 (1 HSPs)
scaffold0005 (229-257)||(56514-56542)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 365411 - 365636
Alignment:
Q  1 gtgcacatggatcatatttgcacggtgattattatggagatggatgaaaaagacacatcaaaatggaaggcatggggcaatgtgtggagagctcgtgaag 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  365411 gtgcacatgggtcatatttgcacggtgattattatggagatggatgaaaaagacacatcaaaatggaaggcatggggcaatgtgtggagagctcgtgaag 365510  T
Q  101 tggagtttggatatctaacacataagaagagatcgagcagtcactaaaatataaaccatcaaataccaaaaatcttaagacatatgtgacgagccccaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  365511 tggagtttggatatctaacacataagaagagatcgagcagtcactaaaatataaaccatcaaataccaaaaatcttaagacatatgtgacgagccccaaa 365610  T
Q  201 catcataatgtattatgcaaatggag 226  Q
    ||||||||||||||||||||||||||    
T  365611 catcataatgtattatgcaaatggag 365636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 258
Target Start/End: Complemental strand, 19705988 - 19705957
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaact 258  Q
    ||||||||||||||||||||||||||||||||    
T  19705988 tcttagaaatcgtggttgggcctaacacaact 19705957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 2063733 - 2063763
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  2063733 tcttagaaatcgtggttgggcctaacacaac 2063763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 13296757 - 13296727
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  13296757 tcttagaaatcgtggttgggcctaacacaac 13296727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 25258093 - 25258123
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  25258093 tcttagaaatcgtggttgggcctaacacaac 25258123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 25321883 - 25321913
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  25321883 tcttagaaatcgtggttgggcctaacacaac 25321913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 28510176 - 28510146
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  28510176 tcttagaaatcgtggttgggcctaacacaac 28510146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 41666756 - 41666786
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  41666756 tcttagaaatcgtggttgggcctaacacaac 41666786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 41666992 - 41667022
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  41666992 tcttagaaatcgtggttgggcctaacacaac 41667022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 256
Target Start/End: Complemental strand, 12034775 - 12034746
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaa 256  Q
    ||||||||||||||||||||||||||||||    
T  12034775 tcttagaaatcgtggttgggcctaacacaa 12034746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 225 - 258
Target Start/End: Original strand, 20510639 - 20510672
Alignment:
Q  225 agtcttagaaatcgtggttgggcctaacacaact 258  Q
    |||||||||||||||| |||||||||||||||||    
T  20510639 agtcttagaaatcgtgtttgggcctaacacaact 20510672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 17016398 - 17016426
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  17016398 ttagaaatcgtggttgggcctaacacaac 17016426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 27132994 - 27133022
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  27132994 ttagaaatcgtggttgggcctaacacaac 27133022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 22827625 - 22827593
Alignment:
Q  225 agtcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||||    
T  22827625 agtcttagaaatcgtggttgggcctaacacaac 22827593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 258
Target Start/End: Original strand, 50543566 - 50543597
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaact 258  Q
    ||||||||||||||||||||||||||||||||    
T  50543566 tcttagaaatcgtggttgggcctaacacaact 50543597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 12869262 - 12869292
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  12869262 tcttagaaatcgtggttgggcctaacacaac 12869292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 17111648 - 17111618
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  17111648 tcttagaaatcgtggttgggcctaacacaac 17111618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 22231307 - 22231337
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  22231307 tcttagaaatcgtggttgggcctaacacaac 22231337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 22845446 - 22845476
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  22845446 tcttagaaatcgtggttgggcctaacacaac 22845476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 22863559 - 22863529
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  22863559 tcttagaaatcgtggttgggcctaacacaac 22863529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 35788744 - 35788714
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  35788744 tcttagaaatcgtggttgggcctaacacaac 35788714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 35788979 - 35788949
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  35788979 tcttagaaatcgtggttgggcctaacacaac 35788949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 40717440 - 40717470
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  40717440 tcttagaaatcgtggttgggcctaacacaac 40717470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 50543329 - 50543359
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  50543329 tcttagaaatcgtggttgggcctaacacaac 50543359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 53559289 - 53559319
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  53559289 tcttagaaatcgtggttgggcctaacacaac 53559319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 256
Target Start/End: Complemental strand, 40726806 - 40726777
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaa 256  Q
    ||||||||||||||||||||||||||||||    
T  40726806 tcttagaaatcgtggttgggcctaacacaa 40726777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 9685481 - 9685453
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  9685481 ttagaaatcgtggttgggcctaacacaac 9685453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 9685715 - 9685687
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  9685715 ttagaaatcgtggttgggcctaacacaac 9685687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 14783188 - 14783216
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  14783188 ttagaaatcgtggttgggcctaacacaac 14783216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 21498878 - 21498850
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  21498878 ttagaaatcgtggttgggcctaacacaac 21498850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 25052935 - 25052907
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  25052935 ttagaaatcgtggttgggcctaacacaac 25052907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 54054806 - 54054834
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  54054806 ttagaaatcgtggttgggcctaacacaac 54054834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 26177230 - 26177198
Alignment:
Q  225 agtcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||||    
T  26177230 agtcttagaaatcgtggttgggcctaacacaac 26177198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 257
Target Start/End: Complemental strand, 40079238 - 40079207
Alignment:
Q  226 gtcttagaaatcgtggttgggcctaacacaac 257  Q
    ||||||||||||||||||||||||||||||||    
T  40079238 gtcttagaaatcgtggttgggcctaacacaac 40079207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 4113005 - 4113035
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  4113005 tcttagaaatcgtggttgggcctaacacaac 4113035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 20208228 - 20208258
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  20208228 tcttagaaatcgtggttgggcctaacacaac 20208258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 20208527 - 20208557
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  20208527 tcttagaaatcgtggttgggcctaacacaac 20208557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 25255396 - 25255366
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  25255396 tcttagaaatcgtggttgggcctaacacaac 25255366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 29266038 - 29266008
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  29266038 tcttagaaatcgtggttgggcctaacacaac 29266008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 30369920 - 30369890
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  30369920 tcttagaaatcgtggttgggcctaacacaac 30369890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 33156818 - 33156788
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  33156818 tcttagaaatcgtggttgggcctaacacaac 33156788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 35772114 - 35772084
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  35772114 tcttagaaatcgtggttgggcctaacacaac 35772084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 35772349 - 35772319
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  35772349 tcttagaaatcgtggttgggcctaacacaac 35772319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 42586438 - 42586468
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  42586438 tcttagaaatcgtggttgggcctaacacaac 42586468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 257
Target Start/End: Original strand, 4098403 - 4098432
Alignment:
Q  228 cttagaaatcgtggttgggcctaacacaac 257  Q
    ||||||||||||||||||||||||||||||    
T  4098403 cttagaaatcgtggttgggcctaacacaac 4098432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 3169849 - 3169821
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  3169849 ttagaaatcgtggttgggcctaacacaac 3169821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 4112536 - 4112568
Alignment:
Q  224 gagtcttagaaatcgtggttgggcctaacacaa 256  Q
    ||||||||||||||||||||| |||||||||||    
T  4112536 gagtcttagaaatcgtggttgtgcctaacacaa 4112568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 17452680 - 17452708
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  17452680 ttagaaatcgtggttgggcctaacacaac 17452708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 51589889 - 51589861
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  51589889 ttagaaatcgtggttgggcctaacacaac 51589861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 257
Target Start/End: Original strand, 42846603 - 42846634
Alignment:
Q  226 gtcttagaaatcgtggttgggcctaacacaac 257  Q
    ||||||||||||||||||||||||||||||||    
T  42846603 gtcttagaaatcgtggttgggcctaacacaac 42846634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 10884149 - 10884119
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  10884149 tcttagaaatcgtggttgggcctaacacaac 10884119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 20301346 - 20301316
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  20301346 tcttagaaatcgtggttgggcctaacacaac 20301316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 20301592 - 20301562
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  20301592 tcttagaaatcgtggttgggcctaacacaac 20301562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 21087978 - 21087948
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  21087978 tcttagaaatcgtggttgggcctaacacaac 21087948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 21088224 - 21088194
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  21088224 tcttagaaatcgtggttgggcctaacacaac 21088194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 27205049 - 27205019
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  27205049 tcttagaaatcgtggttgggcctaacacaac 27205019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 27205147 - 27205117
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  27205147 tcttagaaatcgtggttgggcctaacacaac 27205117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 27205245 - 27205215
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  27205245 tcttagaaatcgtggttgggcctaacacaac 27205215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 35682780 - 35682810
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  35682780 tcttagaaatcgtggttgggcctaacacaac 35682810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 37001549 - 37001519
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  37001549 tcttagaaatcgtggttgggcctaacacaac 37001519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 39960277 - 39960247
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  39960277 tcttagaaatcgtggttgggcctaacacaac 39960247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 41790743 - 41790713
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  41790743 tcttagaaatcgtggttgggcctaacacaac 41790713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 256
Target Start/End: Complemental strand, 12317131 - 12317102
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaa 256  Q
    ||||||||||||||||||||||||||||||    
T  12317131 tcttagaaatcgtggttgggcctaacacaa 12317102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 19256587 - 19256615
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  19256587 ttagaaatcgtggttgggcctaacacaac 19256615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 19256821 - 19256849
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  19256821 ttagaaatcgtggttgggcctaacacaac 19256849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 24075307 - 24075335
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  24075307 ttagaaatcgtggttgggcctaacacaac 24075335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 28213105 - 28213133
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  28213105 ttagaaatcgtggttgggcctaacacaac 28213133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 34653233 - 34653205
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  34653233 ttagaaatcgtggttgggcctaacacaac 34653205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 39743612 - 39743584
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  39743612 ttagaaatcgtggttgggcctaacacaac 39743584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 258
Target Start/End: Original strand, 33996310 - 33996341
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaact 258  Q
    ||||||||||||||||||||||||||||||||    
T  33996310 tcttagaaatcgtggttgggcctaacacaact 33996341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 4886414 - 4886384
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  4886414 tcttagaaatcgtggttgggcctaacacaac 4886384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 10882238 - 10882268
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  10882238 tcttagaaatcgtggttgggcctaacacaac 10882268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 25620221 - 25620191
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  25620221 tcttagaaatcgtggttgggcctaacacaac 25620191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 40121923 - 40121953
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  40121923 tcttagaaatcgtggttgggcctaacacaac 40121953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 43688159 - 43688189
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  43688159 tcttagaaatcgtggttgggcctaacacaac 43688189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 256
Target Start/End: Complemental strand, 21821891 - 21821862
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaa 256  Q
    ||||||||||||||||||||||||||||||    
T  21821891 tcttagaaatcgtggttgggcctaacacaa 21821862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 256
Target Start/End: Complemental strand, 22574920 - 22574891
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaa 256  Q
    ||||||||||||||||||||||||||||||    
T  22574920 tcttagaaatcgtggttgggcctaacacaa 22574891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 258
Target Start/End: Complemental strand, 29469923 - 29469894
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaact 258  Q
    ||||||||||||||||||||||||||||||    
T  29469923 ttagaaatcgtggttgggcctaacacaact 29469894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 257
Target Start/End: Complemental strand, 6991842 - 6991810
Alignment:
Q  225 agtcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||| ||||||||||||||||||||    
T  6991842 agtcttagaaattgtggttgggcctaacacaac 6991810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 29469688 - 29469660
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  29469688 ttagaaatcgtggttgggcctaacacaac 29469660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 31257268 - 31257296
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  31257268 ttagaaatcgtggttgggcctaacacaac 31257296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 255
Target Start/End: Complemental strand, 31892472 - 31892444
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacaca 255  Q
    |||||||||||||||||||||||||||||    
T  31892472 tcttagaaatcgtggttgggcctaacaca 31892444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 34027476 - 34027448
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  34027476 ttagaaatcgtggttgggcctaacacaac 34027448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 44874343 - 44874375
Alignment:
Q  225 agtcttagaaatcgtggttgggcctaacacaac 257  Q
    |||| ||||||||||||||||||||||||||||    
T  44874343 agtcatagaaatcgtggttgggcctaacacaac 44874375  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 257
Target Start/End: Complemental strand, 27086727 - 27086696
Alignment:
Q  226 gtcttagaaatcgtggttgggcctaacacaac 257  Q
    ||||||||||||||||||||||||||||||||    
T  27086727 gtcttagaaatcgtggttgggcctaacacaac 27086696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 1723075 - 1723105
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  1723075 tcttagaaatcgtggttgggcctaacacaac 1723105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 4155409 - 4155379
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  4155409 tcttagaaatcgtggttgggcctaacacaac 4155379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 4155644 - 4155614
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  4155644 tcttagaaatcgtggttgggcctaacacaac 4155614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 17638319 - 17638289
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  17638319 tcttagaaatcgtggttgggcctaacacaac 17638289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 24866282 - 24866252
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  24866282 tcttagaaatcgtggttgggcctaacacaac 24866252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 31317551 - 31317521
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  31317551 tcttagaaatcgtggttgggcctaacacaac 31317521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 35038193 - 35038223
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  35038193 tcttagaaatcgtggttgggcctaacacaac 35038223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 54567977 - 54567947
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  54567977 tcttagaaatcgtggttgggcctaacacaac 54567947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 256
Target Start/End: Complemental strand, 16239676 - 16239647
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaa 256  Q
    ||||||||||||||||||||||||||||||    
T  16239676 tcttagaaatcgtggttgggcctaacacaa 16239647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 11589868 - 11589840
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  11589868 ttagaaatcgtggttgggcctaacacaac 11589840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 21833431 - 21833403
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  21833431 ttagaaatcgtggttgggcctaacacaac 21833403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 47702410 - 47702438
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  47702410 ttagaaatcgtggttgggcctaacacaac 47702438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 50052540 - 50052568
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  50052540 ttagaaatcgtggttgggcctaacacaac 50052568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 50083077 - 50083109
Alignment:
Q  225 agtcttagaaatcgtggttgggcctaacacaac 257  Q
    ||||||||||||| |||||||||||||||||||    
T  50083077 agtcttagaaatcatggttgggcctaacacaac 50083109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 258
Target Start/End: Original strand, 28407792 - 28407823
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaact 258  Q
    ||||||||||||||||||||||||||||||||    
T  28407792 tcttagaaatcgtggttgggcctaacacaact 28407823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 93626 - 93656
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  93626 tcttagaaatcgtggttgggcctaacacaac 93656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 5711438 - 5711468
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  5711438 tcttagaaatcgtggttgggcctaacacaac 5711468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 16419587 - 16419557
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  16419587 tcttagaaatcgtggttgggcctaacacaac 16419557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 17719651 - 17719621
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  17719651 tcttagaaatcgtggttgggcctaacacaac 17719621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 40379208 - 40379238
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  40379208 tcttagaaatcgtggttgggcctaacacaac 40379238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 40379443 - 40379473
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  40379443 tcttagaaatcgtggttgggcctaacacaac 40379473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 256
Target Start/End: Original strand, 19570973 - 19571002
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaa 256  Q
    ||||||||||||||||||||||||||||||    
T  19570973 tcttagaaatcgtggttgggcctaacacaa 19571002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 257
Target Start/End: Complemental strand, 21591866 - 21591837
Alignment:
Q  228 cttagaaatcgtggttgggcctaacacaac 257  Q
    ||||||||||||||||||||||||||||||    
T  21591866 cttagaaatcgtggttgggcctaacacaac 21591837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 256
Target Start/End: Original strand, 31700744 - 31700773
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaa 256  Q
    ||||||||||||||||||||||||||||||    
T  31700744 tcttagaaatcgtggttgggcctaacacaa 31700773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 19191611 - 19191639
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  19191611 ttagaaatcgtggttgggcctaacacaac 19191639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0766 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 6424 - 6394
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  6424 tcttagaaatcgtggttgggcctaacacaac 6394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 5753 - 5783
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  5753 tcttagaaatcgtggttgggcctaacacaac 5783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 81927 - 81897
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  81927 tcttagaaatcgtggttgggcctaacacaac 81897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 4161845 - 4161875
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  4161845 tcttagaaatcgtggttgggcctaacacaac 4161875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 4223465 - 4223495
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  4223465 tcttagaaatcgtggttgggcctaacacaac 4223495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 4868576 - 4868606
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  4868576 tcttagaaatcgtggttgggcctaacacaac 4868606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Original strand, 4868812 - 4868842
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  4868812 tcttagaaatcgtggttgggcctaacacaac 4868842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 257
Target Start/End: Complemental strand, 11721990 - 11721960
Alignment:
Q  227 tcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||||    
T  11721990 tcttagaaatcgtggttgggcctaacacaac 11721960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 224 - 257
Target Start/End: Complemental strand, 16570247 - 16570214
Alignment:
Q  224 gagtcttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||| |||||||||||||||||||    
T  16570247 gagtcttagaaatcatggttgggcctaacacaac 16570214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 257
Target Start/End: Complemental strand, 30256662 - 30256633
Alignment:
Q  228 cttagaaatcgtggttgggcctaacacaac 257  Q
    ||||||||||||||||||||||||||||||    
T  30256662 cttagaaatcgtggttgggcctaacacaac 30256633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 257
Target Start/End: Original strand, 6623407 - 6623439
Alignment:
Q  225 agtcttagaaatcgtggttgggcctaacacaac 257  Q
    ||||||||||||||||||||| |||||||||||    
T  6623407 agtcttagaaatcgtggttggacctaacacaac 6623439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 8026472 - 8026444
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  8026472 ttagaaatcgtggttgggcctaacacaac 8026444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 8026687 - 8026659
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  8026687 ttagaaatcgtggttgggcctaacacaac 8026659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 8566960 - 8566988
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  8566960 ttagaaatcgtggttgggcctaacacaac 8566988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 12330180 - 12330208
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  12330180 ttagaaatcgtggttgggcctaacacaac 12330208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Original strand, 12330292 - 12330320
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  12330292 ttagaaatcgtggttgggcctaacacaac 12330320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 30256895 - 30256867
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  30256895 ttagaaatcgtggttgggcctaacacaac 30256867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 257
Target Start/End: Complemental strand, 56542 - 56514
Alignment:
Q  229 ttagaaatcgtggttgggcctaacacaac 257  Q
    |||||||||||||||||||||||||||||    
T  56542 ttagaaatcgtggttgggcctaacacaac 56514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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