View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7573_low_21 (Length: 254)

Name: NF7573_low_21
Description: NF7573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7573_low_21
NF7573_low_21
[»] chr5 (3 HSPs)
chr5 (146-254)||(38125954-38126062)
chr5 (19-98)||(38125808-38125887)
chr5 (147-232)||(38117833-38117918)
[»] chr6 (2 HSPs)
chr6 (147-245)||(14918159-14918257)
chr6 (19-98)||(14917998-14918074)
[»] chr3 (1 HSPs)
chr3 (149-219)||(35468672-35468742)


Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 146 - 254
Target Start/End: Original strand, 38125954 - 38126062
Alignment:
Q  146 ttgtagggatggtgttagtgagtctcagttcaaccaagttttgaacgttgaactcagccaaatcattgaggttcttaaattgatcaaatttgcattaaat 245  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  38125954 ttgtagggatggtgttagtgagtctcagttcaacgaagtgttgaacgttgaactcagccaaatcatcgaggttcttaaattgaacaaatttgcattaaat 38126053  T
Q  246 caatattgt 254  Q
      |||||||    
T  38126054 atatattgt 38126062  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 38125808 - 38125887
Alignment:
Q  19 ttactttcccaattttctaccatcattttcttctacttgttagttgcaattatttttatgatacttttttgttttcatac 98  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38125808 ttactttcctaattttctaccatcattttcttctacttgctagttgcaattatttttatgatacttttttgttttcatac 38125887  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 38117833 - 38117918
Alignment:
Q  147 tgtagggatggtgttagtgagtctcagttcaaccaagttttgaacgttgaactcagccaaatcattgaggttcttaaattgatcaa 232  Q
    |||||||||||||| || ||||||||||||||||||||||||||| ||||||| |||||||||||||||||| | ||| |||||||    
T  38117833 tgtagggatggtgtcagcgagtctcagttcaaccaagttttgaacattgaactgagccaaatcattgaggttgtcaaagtgatcaa 38117918  T

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Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 147 - 245
Target Start/End: Original strand, 14918159 - 14918257
Alignment:
Q  147 tgtagggatggtgttagtgagtctcagttcaaccaagttttgaacgttgaactcagccaaatcattgaggttcttaaattgatcaaatttgcattaaat 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||| || ||||||||||||||||||    
T  14918159 tgtagggatggtgttagtgagtctcagttcaaccaagttttgaacgtcgaactcggccaaatcatcgaggttcttaacttcatcaaatttgcattaaat 14918257  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 14917998 - 14918074
Alignment:
Q  19 ttactttcccaattttctaccat-cattttcttctacttgttagttgcaattatttttatgatacttttttgttttcatac 98  Q
    ||||||||||||||||||| ||| ||||||||||||| ||||    ||||| ||||||||||||||||  | |||||||||    
T  14917998 ttactttcccaattttctatcattcattttcttctacctgtt----gcaatcatttttatgatactttactattttcatac 14918074  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 35468672 - 35468742
Alignment:
Q  149 tagggatggtgttagtgagtctcagttcaaccaagttttgaacgttgaactcagccaaatcattgaggttc 219  Q
    ||||||||||||||||||||| || ||||| |||||||||||  ||||||||  ||| |||||||||||||    
T  35468672 tagggatggtgttagtgagtcacaattcaatcaagttttgaatattgaactcgaccagatcattgaggttc 35468742  T

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