View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7573_low_3 (Length: 519)
Name: NF7573_low_3
Description: NF7573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7573_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 508
Target Start/End: Original strand, 22299234 - 22299715
Alignment:
| Q |
16 |
catcacactatcatttttatttaattcatctactccatccacctaaacacctccttccaaacctattgagaaaaactacaaattgtaaacaaatttaact |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22299234 |
catcacactatcatttttatttaattcatctactccatccacctaaacacctccttccaaacctattgagaaaaactacaa-----------atttaact |
22299322 |
T |
|
| Q |
116 |
ccatgtgcaacttctatagccccactgttgagagagtgctctcattcatatggttaaaaacatcaattttatgcttagactcatcatcagtattaatcat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22299323 |
ccatgtgcaacttctatagccccactgttgagagagtgctctcattcatatggttaaaaacatcaattttatgcgtagactcatcatcagtattaatcat |
22299422 |
T |
|
| Q |
216 |
cgataatgccattagtaaagtaatgcatgtatataaaacagatagaaaatcagttaattagcattactatccatcaccttgcttacgaaacaagcaactc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22299423 |
cgataatgccattagtaaagtaatgcatgtatataaaacagatagaaaatcagttaattagcattactatccatcaccttgcttatgaaacaagcaactc |
22299522 |
T |
|
| Q |
316 |
acgagacatgaaagccataaacctaacnnnnnnnnnnnnnnnnnnnnnnntacagtaagtgaaagtgataattcttgcatgatgattctttttgacaata |
415 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22299523 |
acgagacatgaaagccataaacctaacaaaagaagaaaataaataaaaaaaacaataagtgaaagtgataattcttgcatgatgattctttttgacaata |
22299622 |
T |
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| Q |
416 |
atacagcttgcaaagatttaatcacatgctcactcaacaactcctagcagtatcacatgcacaagctaaaatattaccaaaatgatataaaca |
508 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22299623 |
ttacagcttgcaaagatttaagcacatgctcactcaacaactcctagcagtatcacatgcacaagctaaaatattaccaaaatgatataaaca |
22299715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 447 - 516
Target Start/End: Original strand, 22293786 - 22293855
Alignment:
| Q |
447 |
actcaacaactcctagcagtatcacatgcacaagctaaaatattaccaaaatgatataaacaccaaactc |
516 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
22293786 |
actcaacagctcccggcagtatcacatgcacaagctaaaatattaccaaaatgatacaaacaacaaactc |
22293855 |
T |
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