View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7573_low_4 (Length: 467)
Name: NF7573_low_4
Description: NF7573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7573_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 44892327 - 44892771
Alignment:
| Q |
1 |
caaggaagaggaggaaaggatcactaatatggaggagggaacaattggtaaatcatcaagaccatcacaacacaagaaaactgatttgagtaactttaaa |
100 |
Q |
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| T |
44892327 |
caaggaagaggaggaaaggatcactaatatggaggagggaacaattggtaaatcatcaagaccatcagaacacaagaaaactgatttgagtaactttaaa |
44892426 |
T |
|
| Q |
101 |
actagaaaggcttatttttactggatggctggtgaacaaggtttctttgattggtttaaaggggtaataaatgaggtggctgaagaggatcacaagaaag |
200 |
Q |
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| T |
44892427 |
actagaaaggcttatttttactggatggctggtgaacaaggtttctttgattggtttaaaggggtaataaatgaggtggctgaagaggatcacaagaaag |
44892526 |
T |
|
| Q |
201 |
taattgagatacacagtcacttgactagtgtatatgaagacggtgatgctcgctctgctcttgttactgtccttcaatcactaaaccatgctaaaaaagg |
300 |
Q |
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| T |
44892527 |
taattgagatacacagtcacttgactagtgtatatgaagacggtgatgctcgctctgctcttgttactgtccttcaatcactaaaccatgctaaagaagg |
44892626 |
T |
|
| Q |
301 |
tttggatatcttaaatggaacacccatcgcgtcttactttgcacgacccaattggcgcagtgtctacaataggattgcaaaaaatcatccacaaaaacgc |
400 |
Q |
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| T |
44892627 |
tttggatatcttaaatggaacacccatcgcgtcttactttgcacgacccaattggcgcagtgtctacaataggattgcaaataatcatccacaaaaacgc |
44892726 |
T |
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| Q |
401 |
attggtgagttcctattcttcgtgctcatttgacataacaaagtc |
445 |
Q |
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| T |
44892727 |
attggtgagttcctattcttcgtgctcatttgacataacaaagtc |
44892771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 35 - 416
Target Start/End: Original strand, 44901014 - 44901395
Alignment:
| Q |
35 |
gagggaacaattggtaaatcatcaagaccatcacaacacaagaaaactgatttgagtaactttaaaactagaaaggcttatttttactggatggctggtg |
134 |
Q |
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| T |
44901014 |
gagggaacaggtggcaaatcaccaagatcatcacaacgcaagaaaaccggtttaaataacttcaaaactagaaaggcttatttttattgggtggcggcga |
44901113 |
T |
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| Q |
135 |
aacaaggtttctttgattggtttaaaggggtaataaatgaggtggctgaagaggatcacaagaaagtaattgagatacacagtcacttgactagtgtata |
234 |
Q |
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| T |
44901114 |
aacaaggtttctttgattggtttaaagatgtaatgaatgaggtggtggaagaagaccgtaggagagtaattgagatccacagtcacttgactagtgtata |
44901213 |
T |
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| Q |
235 |
tgaagacggtgatgctcgctctgctcttgttactgtccttcaatcactaaaccatgctaaaaaaggtttggatatcttaaatggaacacccatcgcgtct |
334 |
Q |
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| T |
44901214 |
tgaagacggtgatgctcaatctgctcttattgctatgcttcaatcactaaaccatgctaaaaatggtgtggatatcttgactggaacacccgtcaagtct |
44901313 |
T |
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| Q |
335 |
tactttgcacgacccaattggcgcagtgtctacaataggattgcaaaaaatcatccacaaaaacgcattggtgagttcctat |
416 |
Q |
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| T |
44901314 |
cactttgctagaccaaaatggtgcagcgtctacaagcgcattgcacttaatcatccacaaaaacgcattggtgagttcctat |
44901395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 32 - 421
Target Start/End: Original strand, 44917761 - 44918150
Alignment:
| Q |
32 |
gaggagggaacaattggtaaatcatcaagaccatcacaacacaagaaaactgatttgagtaactttaaaactagaaaggcttatttttactggatggctg |
131 |
Q |
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||||||||||||| | |||||||| | ||||||||||||||||||| ||| | ||||| || ||||||||||| | |||||||||||||||| | || |
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| T |
44917761 |
gaggagggaacaagtagtaaatcaccgagaccatcacaacacaagagaaccggtttgaatagctttaaaactaagagggcttatttttactgggttacta |
44917860 |
T |
|
| Q |
132 |
gtgaacaaggtttctttgattggtttaaaggggtaataaatgaggtggctgaagaggatcacaagaaagtaattgagatacacagtcacttgactagtgt |
231 |
Q |
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| T |
44917861 |
gagaacagggttcatttgattggtttaaaggagtaatgaatgaggtggctgaagatgatcataggggagtaattgagctacacaattattgtactagtgt |
44917960 |
T |
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| Q |
232 |
atatgaagacggtgatgctcgctctgctcttgttactgtccttcaatcactaaaccatgctaaaaaaggtttggatatcttaaatggaacacccatcgcg |
331 |
Q |
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|||||||| ||||||||||||||||||||| || || | || |||||||| || ||||||||||| ||| |||||||| | |||||||| | || | |
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| T |
44917961 |
ttatgaagagggtgatgctcgctctgctcttattgctatgctccaatcacttaatcatgctaaaaatggtgtggatatcgtctctggaacacgcgtcaag |
44918060 |
T |
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| Q |
332 |
tcttactttgcacgacccaattggcgcagtgtctacaataggattgcaaaaaatcatccacaaaaacgcattggtgagttcctattcttc |
421 |
Q |
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| T |
44918061 |
tctcactttgctaaacctaattggcgtagtgtctacaagcgcattgcacttaatcatccacaaacacgcgttggtgagttctcattcttc |
44918150 |
T |
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