View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7573_low_5 (Length: 455)
Name: NF7573_low_5
Description: NF7573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7573_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 9864379 - 9864820
Alignment:
| Q |
1 |
atctctttgtccgataatgatgtctctgcatgactaatcttctctataaagcttactttattagacaaaaaagtaggatttgaaaatgaattttttctta |
100 |
Q |
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| T |
9864379 |
atctctttgtccgataatgatgtctctgcatgactaatcttctctataaagcttactttattagacaaaaatgtaggatttgaaaatgaattttttctta |
9864478 |
T |
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| Q |
101 |
taatgattatgannnnnnnnnnctctcttgtatatatgaatgcaggtaggaatagttgttggaaacataggaattgtacgcaatctatttgagaaattca |
200 |
Q |
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| T |
9864479 |
taatgattatgattttttttttctctcttgtata--tgaatgcaggtaggaatagttgttggaaacataggaattgtacgcaatctatttgagaaattca |
9864576 |
T |
|
| Q |
201 |
acaggacatttggatttataattgattttggtatgatgtgttacatgtttgcattagggatagaaatggacccttatatactattnnnnnnnccaccaag |
300 |
Q |
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| T |
9864577 |
acaggacatttggatttataattgattttggtatgatgtgttacatgtttgcattagggatagaaatggacccttatatactattaaaaaaaccaccaag |
9864676 |
T |
|
| Q |
301 |
acatgttagagttgcttatccaggaatttgcataacaatcttactaggaattattttctccccttttgtaacttacttcccaaacagagataaaatatta |
400 |
Q |
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| T |
9864677 |
acatgttagagttgcttatccaggaatttgcataacaatcttactaggaattattttctccccttttgtaacttacttcccaaacagagataaaatatta |
9864776 |
T |
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| Q |
401 |
gaattcacaacagctctttcccttctactagctagcacaggttc |
444 |
Q |
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| T |
9864777 |
gaattcacaacagctctttcccttctactagctagtacaggttc |
9864820 |
T |
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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 13954910 - 13954834
Alignment:
| Q |
206 |
acatttggatttataattgattttggtatgatgtgttacatgtttgcattagggatagaaatggacccttatatact |
282 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||||||| || || |||||||||| |||||| |||| |
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| T |
13954910 |
acatttggatttatcattgattttggaatgatgtgttacatgtttgctttgggtgtagaaatggatccttatgtact |
13954834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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