View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7573_low_6 (Length: 450)
Name: NF7573_low_6
Description: NF7573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7573_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Original strand, 33582598 - 33583027
Alignment:
| Q |
19 |
ttttccaccctaatgccaatgatatgagcaggactcacagaatctgaagttccatatgtagcattaccagagatttcatctaaaagaagatgataaataa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33582598 |
ttttccaccctaatgccaatgatatgagcaggactcacagaatctgaagttccatatgtagcattaccagagatttcatctaaaagaagatgataaataa |
33582697 |
T |
|
| Q |
119 |
gagtaaatataggctatattccatgatcaactatattttaattttctatctatatcaatctactgaccactcttaacttgagtgaagatcgcactggatt |
218 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33582698 |
gagtaaatataggctatat-ccatgatcaactatattttaattttttatctatatcaatctactgaccactcttaacttgagtgaagatcgcactggatt |
33582796 |
T |
|
| Q |
219 |
cttctgatagcagttcttgcttcggtgcctccttatactttgaaaaagaatacggtaacttagcatttgaatatattctaactgaaattaaatggtttaa |
318 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33582797 |
cttctgatagcagttcttgcttccgtgcctccttatactttgaaaaagaatacagtaacttagcatttgaatatattctaactgaaattaaatggttcaa |
33582896 |
T |
|
| Q |
319 |
ttcgagtgattaatgatgaggttcaggaaaggtcaagtcaattagaagt--taagtacgaatcctgattgaaacaatcattaactaaactttacttactt |
416 |
Q |
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| T |
33582897 |
tttgagtgattaatgatgaggttcgggaaaggtcaagtcaattggaagtaccaagtacaaatcctggttgaaataattattgactaaattttacttacct |
33582996 |
T |
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| Q |
417 |
cctgtctaaactacggatcataagagttcat |
447 |
Q |
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| T |
33582997 |
cctgtctgaactacgaatcataaaagttcat |
33583027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 33593614 - 33593842
Alignment:
| Q |
19 |
ttttccaccctaatgccaatgatatgagcaggactcacagaatctgaagttccatatgtagcattaccagagatttcatctaaaagaagatgataaataa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33593614 |
ttttccaccctaatgccaatgatatgagcaggactcacagaatctgaagttccatatgtagcattaccagagatttcatctaaaagaagatgataaataa |
33593713 |
T |
|
| Q |
119 |
gagtaaatataggctatattccatgatcaactatattttaattttctatctatatcaatctactgaccactcttaacttgagtgaagatcgcactggatt |
218 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33593714 |
gagtaaatataggctatattccatgatcaactataatttaattttttatctatatcaatctactgaccactcttaacttgagtgaagatcgcgctggatt |
33593813 |
T |
|
| Q |
219 |
cttctgatagcagttcttgcttcggtgcct |
248 |
Q |
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| T |
33593814 |
-ttctgatagcagttcttgcttcggtgcct |
33593842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 37197676 - 37197456
Alignment:
| Q |
19 |
ttttccaccctaatgccaatgatatgagcaggactcacagaatctgaagttccatatgtagcattaccagagatttcatctaaaag-aagatgataaata |
117 |
Q |
| |
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|||||||||||||| ||||| |||| |||||||||| ||||||||||||||||||||||||||||||| |||| ||||||| |||| ||||||||||||| |
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| T |
37197676 |
ttttccaccctaattccaatcatattagcaggactcgcagaatctgaagttccatatgtagcattaccggagacttcatctgaaagaaagatgataaata |
37197577 |
T |
|
| Q |
118 |
agagtaaatataggctatattc---catgatcaactatattttaattttctatctatatcaatctactgaccactcttaacttgagtgaagatcgcactg |
214 |
Q |
| |
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|| || ||||| |||| || |||||||||||||||||||||||||||||| ||||| | |||| ||||||||||| ||||||||| ||| |
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| T |
37197576 |
agcgttcctatagtctatcgtccatcatgatcaactatattttaattttctatct------atctatttaccattcttaacttgaccgaagatcgcgctg |
37197483 |
T |
|
| Q |
215 |
gattcttctgatagcagttcttgcttc |
241 |
Q |
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|||||||| || || | |||||||||| |
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| T |
37197482 |
gattcttccgaaagaaattcttgcttc |
37197456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 37230611 - 37230548
Alignment:
| Q |
252 |
tatactttgaaaaagaatacggtaacttagcatttgaatatattctaactgaaattaaatggtt |
315 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
37230611 |
tatactttgaaaaataatagagtaacttagcatttaaatatactctaactgaaattaaatggtt |
37230548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 278 - 447
Target Start/End: Original strand, 33596090 - 33596258
Alignment:
| Q |
278 |
ttagcatttgaatatattctaactgaaattaaatggtttaattcgagtgattaatgatgaggttcaggaaaggtcaagtcaattagaagt--taagtacg |
375 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||| |||| |||||||| ||||||||| | ||||||||||| ||| |||| |||| || |
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| T |
33596090 |
ttagcatttgaatatactctaactgaaattaaatggttctattcaagtgatta---atgaggttcggtgaaggtcaagtcgattgcaagtaccaagttcg |
33596186 |
T |
|
| Q |
376 |
aatcctgattgaaacaatcattaactaaactttacttacttcctgtctaaactacggatcataagagttcat |
447 |
Q |
| |
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|| |||| ||| |||||||||| |||| | ||||||||| ||| ||| ||||| |||| || | ||||||| |
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| T |
33596187 |
aaccctggttgtaacaatcattgactagattttacttacctcccgtccgaactatggattatcatagttcat |
33596258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 37237528 - 37237465
Alignment:
| Q |
252 |
tatactttgaaaaagaatacggtaacttagcatttgaatatattctaactgaaattaaatggtt |
315 |
Q |
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|||||||||||||| |||| |||||||||||||| |||||| |||||||||||||||| |||| |
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| T |
37237528 |
tatactttgaaaaataatagagtaacttagcatttaaatatactctaactgaaattaaagggtt |
37237465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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