View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7573_low_8 (Length: 407)
Name: NF7573_low_8
Description: NF7573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7573_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 26518618 - 26518249
Alignment:
| Q |
1 |
ataataagaaaatctatgtctatctatctatctatagtatattcttccctcnnnnnnnnnnctaaggtatattctactaaattctactgtactctcttct |
100 |
Q |
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| T |
26518618 |
ataataagaaaatctatgtccatctatctat----agtatattcttccctcaaaaaaaat-ctaaggtatattctactaa-taatactgtactctcttct |
26518525 |
T |
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| Q |
101 |
gtaacaatggtcccgactaaaaaagaaccctaacaacgagagacacagatgcatgatgcatcacgtgtaattcgaggaaaaacttttgtcacccaatcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26518524 |
gtaacaatggtcccgactaaaaaagaaccctaacaacgagagacacagatgcatgatgcatcacgtgtaattcgaggaaaaacttttgccacccaatcat |
26518425 |
T |
|
| Q |
201 |
ttcccgtcacgtttatgtagtattgattgattattgtttttctattactta----------tataccaagctcaagattttatgggacaagcttattgtt |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26518424 |
ttcccgtcacgtttatgtagtattgattgattattgtttttctattacttatatatacttatataccaagctcaagattttatgggacaagcttattgtt |
26518325 |
T |
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| Q |
291 |
aattggccttattaacagtaaattaggtggacatatatcatcatgagttgaggcaaaagagacctaagaagaattg |
366 |
Q |
| |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26518324 |
aattggccttattaacagtaaattatgtgggcatatatcatcatgagttgaggcaaaagagacctaagaagaattg |
26518249 |
T |
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