View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7573_low_9 (Length: 354)
Name: NF7573_low_9
Description: NF7573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7573_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 4163939 - 4163604
Alignment:
| Q |
1 |
tgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatggtagcatcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4163939 |
tgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatggtagcatcatt |
4163840 |
T |
|
| Q |
101 |
tggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattctggatcaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4163839 |
tggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattctagatcaacaa |
4163740 |
T |
|
| Q |
201 |
tttgggatagtttcactcaccctgcggatgccgctgttccaacgatgagaattgcatctaataaagcaacggggaagaatatatcttttgtatcaagaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4163739 |
tttgggatagtttcactcaccctgcggatgccgctgttccaacgatgagaattgcatctaataaagcaacggggaagaatatatcttttgtatcaagaaa |
4163640 |
T |
|
| Q |
301 |
aagtgaaaatgatccttcttcaggacattatatagg |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
4163639 |
aagtgaaaatgatccttcttcaggacattatatagg |
4163604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 4134775 - 4134453
Alignment:
| Q |
1 |
tgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatggtagcatcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
4134775 |
tgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggtatcatcatt |
4134676 |
T |
|
| Q |
101 |
tggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattctggatcaacaa |
200 |
Q |
| |
|
|||||||||| ||||||| || ||||| |||||| |||||| |||||| ||||| ||| |||||||||||||| ||||||||||||||| |||||| |
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|
| T |
4134675 |
tggtcaacaaacatttca--tc----ttcaacaaattcaacagctaaacttgatgatgcagggaacttgattctaagagacatcaattctggagcaacaa |
4134582 |
T |
|
| Q |
201 |
tttgggatagtttcactcaccctgcggatgccgctgttccaacgatgagaattgcatctaataaagcaacggggaagaatatatcttttgtatcaagaaa |
300 |
Q |
| |
|
| |||||||||||||| |||||||| ||| | ||||||||| |||||| ||||||||||||||||| || || ||| | || |||||||| ||||||| |
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|
| T |
4134581 |
tctgggatagtttcacacaccctgcagattcagctgttccatcgatgaaaattgcatctaataaagttacaggtaagcaaattgcttttgtagcaagaaa |
4134482 |
T |
|
| Q |
301 |
aagtgaaaatgatccttcttcaggacatt |
329 |
Q |
| |
|
|||||| |||||||||||||| ||||||| |
|
|
| T |
4134481 |
aagtgacaatgatccttcttcgggacatt |
4134453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 4124230 - 4123906
Alignment:
| Q |
1 |
tgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatggtagcatcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || || |
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|
| T |
4124230 |
tgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaaccaaatggtgttattata |
4124131 |
T |
|
| Q |
101 |
tggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattctggatcaacaa |
200 |
Q |
| |
|
|||||||||| ||||||| || ||||| |||||| ||||||||||||| |||| ||||||||||||| | || || |||| ||||||| |||||| |
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|
| T |
4124130 |
tggtcaacaaacatttca--tc----ttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagcaacaa |
4124037 |
T |
|
| Q |
201 |
tttgggatagtttcactcaccctgcggatgccgctgttccaacgatgagaattgcatctaataaagcaacggggaagaatatatcttttgtatcaagaaa |
300 |
Q |
| |
|
| |||||||||||||| |||||||| ||||| ||||||||||| |||||||||||| |||| ||| ||| || ||||| ||||| |||||||||||||| |
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|
| T |
4124036 |
tctgggatagtttcacacaccctgcagatgcagctgttccaacaatgagaattgcagctaaccaagtaacaggtaagaaaatatcctttgtatcaagaaa |
4123937 |
T |
|
| Q |
301 |
aagtgaaaatgatccttcttcaggacattat |
331 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
|
|
| T |
4123936 |
aagtgataatgatccttcttcaggacattat |
4123906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 4145577 - 4145255
Alignment:
| Q |
1 |
tgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatggtagcatcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||| |
|
|
| T |
4145577 |
tgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaaaatggaaatcttgtaattttgaacaaaccaaatggcagcatcatt |
4145478 |
T |
|
| Q |
101 |
tggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattctggatcaacaa |
200 |
Q |
| |
|
|||||||||| ||||||| || ||||| |||||| |||||| |||||| ||||| ||| |||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
4145477 |
tggtcaacaaacatttca--tc----ttcaacaaattcaacagctaaacttgatgatgcagggaacttgattctaagagacatcaattctggagcaacaa |
4145384 |
T |
|
| Q |
201 |
tttgggatagtttcactcaccctgcggatgccgctgttccaacgatgagaattgcatctaataaagcaacggggaagaatatatcttttgtatcaagaaa |
300 |
Q |
| |
|
| |||||||||||||| |||||| | ||| | ||||||||| |||||| |||||||||||| |||| || || ||| | || |||||||| ||||||| |
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|
| T |
4145383 |
tctgggatagtttcacacacccttcagattcagctgttccatcgatgaaaattgcatctaacaaagttacaggtaagcaaattgcttttgtagcaagaaa |
4145284 |
T |
|
| Q |
301 |
aagtgaaaatgatccttcttcaggacatt |
329 |
Q |
| |
|
|||||| |||||||||||||| ||||||| |
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|
| T |
4145283 |
aagtgacaatgatccttcttcgggacatt |
4145255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 4153580 - 4153256
Alignment:
| Q |
1 |
tgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatggtagcatcatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||| || |||||||||||||| ||||||| || || |
|
|
| T |
4153580 |
tgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaattttataatattgaacaaaccaaatggtgttattata |
4153481 |
T |
|
| Q |
101 |
tggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattctggatcaacaa |
200 |
Q |
| |
|
|||||||||| ||||||| || ||||| |||||| ||||||||||||| |||| ||||||||||||| | || || |||| ||| ||| |||||| |
|
|
| T |
4153480 |
tggtcaacaaacatttca--tc----ttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttccggagcaacaa |
4153387 |
T |
|
| Q |
201 |
tttgggatagtttcactcaccctgcggatgccgctgttccaacgatgagaattgcatctaataaagcaacggggaagaatatatcttttgtatcaagaaa |
300 |
Q |
| |
|
| |||||||||||||| |||||||| ||||| ||||||||||| |||||||||||| |||| ||| ||| || ||||| ||||| |||||||||||||| |
|
|
| T |
4153386 |
tctgggatagtttcacacaccctgcagatgcagctgttccaacaatgagaattgcagctaaccaagtaacaggtaagaaaatatcctttgtatcaagaaa |
4153287 |
T |
|
| Q |
301 |
aagtgaaaatgatccttcttcaggacattat |
331 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |
|
|
| T |
4153286 |
aagtgataatgatccttcttcaggacattat |
4153256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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