View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7574_high_1 (Length: 490)
Name: NF7574_high_1
Description: NF7574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7574_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 9 - 473
Target Start/End: Original strand, 38829227 - 38829698
Alignment:
| Q |
9 |
tggtgttcctgcagttggtgcatttggagcctacgcgaaaaaagaaagaaactatttagacaaataaaatgaaatagggaattaggagattggtcatttt |
108 |
Q |
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| T |
38829227 |
tggtgttcctgcagttggtgcatttggagcctacgcgaaaaaagaaagaaactatttagacaaataaaatgaaatagggaattaggagattggtcatttt |
38829326 |
T |
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| Q |
109 |
ctatgctgttttaactaattaagatgactttttgtcnnnnnnnn-----gtaattaagataacttttttactatccaannnnnnnagggtttgctacctc |
203 |
Q |
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| T |
38829327 |
ctatgctgttttaactaattaagatgactttttgtcaacaaaaaaaaaagtaattaagataacttttttactatccaatttttttagggtttgctacctc |
38829426 |
T |
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| Q |
204 |
aaattaaataacttttttatatacaacttttaattgttaacatatatcatctgaattttggatctcttttgagtgtaatagttcaacaacttgagcta-- |
301 |
Q |
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| T |
38829427 |
aaattaaataacttttttatatacaacttttaattgttaacatatatcatctgaattttggatctcttttgaatgtaatagttcaacaacttgagctata |
38829526 |
T |
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| Q |
302 |
cgcattcgaaacttaatttacttacccgttggtgccaatacgaagcgttaggaggtggagccggccgcgcaggtggccaattagctggtggctggtgcgg |
401 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38829527 |
cgcatttgaaacttaatttacttacccgttggtgccaatacgaagcgttaggaggtggagccggccgcgcaggtggccaattagccggtggctggtgcgg |
38829626 |
T |
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| Q |
402 |
cgaatatttaggccacatgtgcataaaggactgatccacaggatggtgcccccatacatgtaaaggtctaaa |
473 |
Q |
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| T |
38829627 |
cgaatatttaggccacatgtgcataaaggactgatccacaggatggtgcccccatacatgtaaaggtctaaa |
38829698 |
T |
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