View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7574_high_2 (Length: 432)
Name: NF7574_high_2
Description: NF7574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7574_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 15 - 418
Target Start/End: Complemental strand, 24537944 - 24537541
Alignment:
| Q |
15 |
tattcttaagatcctctagttcaaagtcctgctcatatattgggtctatattttgactcatcaaaactctaacaagttcaacttcctgataaagatctat |
114 |
Q |
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| T |
24537944 |
tattcttaagatcctctagttcaaagtcctgctcatatattgggtctatattttgactcatcaaaactctaacaagatcaacttcctgataaagatctat |
24537845 |
T |
|
| Q |
115 |
ggccatttgaaaatatgcctcttgattgaaattttcgtaaaagcaactaccatgcatatcccattgggctttccaaaattgattatcgtcaccatgctgg |
214 |
Q |
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| T |
24537844 |
ggccatttgaaaatatgcctcttgattgaaattttcgtaaaagcaactaccatgcatatcccattgggctttccaaaattcattatcgtcaccatgctgg |
24537745 |
T |
|
| Q |
215 |
aaatcgatccaaatgcgcttcaactccctttctttcattttacactattgaagaaaaagaacagaacaattttattcaccatataaataaaacaacaatg |
314 |
Q |
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|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24537744 |
aaatcgatccaaatacgcgtcaactccctttctttcattttacactattgaagaaaaagaacagaacaattttattcaccatataaataaaacaacaatg |
24537645 |
T |
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| Q |
315 |
agattatttaatgtaaactcaaattcatatttaggaggtttggaagcattaatactatgttagttatcaattttatattaatcttctaaattttggtcta |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24537644 |
agattatttaatgtaaactcaaattcatatttaggaggtttggaagcactaatactatgttagttatcaattttatattaatcttctaaattttggtcta |
24537545 |
T |
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| Q |
415 |
attt |
418 |
Q |
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|||| |
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| T |
24537544 |
attt |
24537541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 101 - 372
Target Start/End: Original strand, 29719671 - 29719943
Alignment:
| Q |
101 |
tgataaagatctatggccatttgaaaatatgcct-cttgattgaaattttcgtaaaagcaactaccatgcatatcccattgggctttccaaaa-ttgatt |
198 |
Q |
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|||| |||||||||||||| |||||||||||| | | || |||||| |||| || ||||| |||||||| |||||||||| ||| |||||| || ||| |
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| T |
29719671 |
tgatgaagatctatggccaattgaaaatatgctttcctggttgaaagtttcatagaagcagctaccatgtgcatcccattggccttcccaaaagttcatt |
29719770 |
T |
|
| Q |
199 |
atcgtcaccatgctggaaatcgatccaaatgcgcttcaactccctttctttcattttacactattgaagaaaaagaacagaacaattttattcaccatat |
298 |
Q |
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|| || || | | |||||| | ||||||| | |||| |||||||||||| || |||||||||||| |||||||||||||||||||||||||||| |
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| T |
29719771 |
-tcatcgcctttcaagaaatccacccaaatgtacatcaaatccctttctttctgttcacactattgaaggaaaagaacagaacaattttattcaccatgc |
29719869 |
T |
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| Q |
299 |
aaataaaacaacaatgagattatttaatgtaaactcaaattcatatttaggaggtttggaagcattaatactat |
372 |
Q |
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||||| || || ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
29719870 |
aaatataaaaataatgagattatttaatgtaaactcaaattcatatttaggagttttggaagcactaatactat |
29719943 |
T |
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