View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7574_high_3 (Length: 414)
Name: NF7574_high_3
Description: NF7574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7574_high_3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 87 - 414
Target Start/End: Complemental strand, 5697715 - 5697388
Alignment:
| Q |
87 |
acacgttgcaacaatgactaaatctatgaagaacaaaatgaatgcaacaaataattcctaaatgagcaaataatttttgaagttctgcccatcagaatta |
186 |
Q |
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| T |
5697715 |
acacattgcaacaatgactaaatctatgaagaacaaaatgaatgcaacaaataattcctaaatgagcaaataatttttgaagttctgcccatcagaatta |
5697616 |
T |
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| Q |
187 |
tcccttagaggcaatgtttcgtggtgagatttgcaactggaaaacatattataaactccttgggatagcaaaaatcgttgagtgggttgaaataggggaa |
286 |
Q |
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| T |
5697615 |
tcccttagaggcaatgtttcgtggggagatttgcaactggaaaacatattataaactccttgggatagcaaaaatcgttgagtgggttgaattaggggaa |
5697516 |
T |
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| Q |
287 |
atgagagaaattatggattgctcttgataaacaattgaggataatttattggttaatttttgtaactctcttgttcttgatataaaaggttagggtggaa |
386 |
Q |
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| T |
5697515 |
atgagagaaattatggattgctcttggtaaacaattgaggataatttattggttaatttttgtaactctcttgttcttgatataaaaggttagggtggaa |
5697416 |
T |
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| Q |
387 |
attagggtttgctgatgtccatctcatt |
414 |
Q |
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| T |
5697415 |
attagggtttgcttatgttgatctcatt |
5697388 |
T |
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