View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7574_low_10 (Length: 239)
Name: NF7574_low_10
Description: NF7574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7574_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 31998960 - 31999183
Alignment:
| Q |
1 |
taaatatagttgttttacaagaggaaaactaattcatataattaaagatcaaatgatcaatacatgttgaaacatcacaataaagatgagaaattgcatt |
100 |
Q |
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| T |
31998960 |
taaatatagttgttttacaagaggaaaactaattcatataattaaagatcaaatgatcaatacatgttgaaacatcacaataaagatgagaaattgcatt |
31999059 |
T |
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| Q |
101 |
gactgcctagaaaactccacacaagagttgttacataaaccaattaggatcctacatgtaacaaggatagcgcctacttccgtctaatcctgagagtgtc |
200 |
Q |
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| T |
31999060 |
gactgcctagaaaactccacacaagagttgttacataaaccaattaggctcctacatgcaacaagaatagcgcctacttccgtctaatcccgagagtgtc |
31999159 |
T |
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| Q |
201 |
tattaaactggtctacaaccaact |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
31999160 |
tattaaactggtctacaaccaact |
31999183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 17231961 - 17231882
Alignment:
| Q |
13 |
ttttacaagaggaaaactaattcatataattaaagatcaaatgatcaatacatgttgaaacatcacaataaagatgagaa |
92 |
Q |
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| T |
17231961 |
ttttacaagaggaaaactaattcctatcattgatgatcaagttattaatatatgttggaatatcataataaagatgagaa |
17231882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 30612429 - 30612357
Alignment:
| Q |
152 |
ctacatgtaacaaggatagcgcctacttccgtctaatcctgagagtgtctattaaactggtctacaaccaact |
224 |
Q |
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| T |
30612429 |
ctacatttagcaagaatagcgcctactttcgtgttatcttgagagtgtcgattaaattggtctacgaccaact |
30612357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 44773620 - 44773688
Alignment:
| Q |
24 |
gaaaactaattcatataattaaagatcaaatgatcaatacatgttgaaacatcacaataaagatgagaa |
92 |
Q |
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|||||||||||||| | |||||| |||||| | |||||||||| | ||||||| |||||| ||||||| |
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| T |
44773620 |
gaaaactaattcatttcattaaaaatcaaacggtcaatacatgatagaacatcataataaatatgagaa |
44773688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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