View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7574_low_11 (Length: 238)
Name: NF7574_low_11
Description: NF7574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7574_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 44965670 - 44965898
Alignment:
| Q |
1 |
ctagatattctagtaagtttctaaaatgtaattagccaaaaatgtgaaatt----------tctgtttataggtgttagcattgttnnnnnnntgaggag |
90 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||| ||||||| |
|
|
| T |
44965670 |
ctagatattctagtaagtttctaaaatgtaattagccaaaaatgtgaaattcgtctttaattttgattataggtgttagcattgttaaaaaaatgaggag |
44965769 |
T |
|
| Q |
91 |
tgaataatcaatctctaatttctgtttgcaatttaaattttttatcaattgtttcttggctataattttgtcatttataggtaaataatgctggtgttaa |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44965770 |
tgaataatcaatctctaatttctgtttgcaatttaaattttttatcaattgtttcttggctataattttgtcatttataggtaaataatgctggtgttaa |
44965869 |
T |
|
| Q |
191 |
ttcgaacatgggatctgataactcagttg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44965870 |
ttcgaacatgggatctgataactcagttg |
44965898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University