View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7574_low_6 (Length: 312)
Name: NF7574_low_6
Description: NF7574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7574_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 52605133 - 52605444
Alignment:
| Q |
1 |
aaatttttgagtcaaatagggaatattggtggcaaagaaaataaggagatgaaaaagaaggaggtagaggaagcaaaaggaattgatttatattgttagt |
100 |
Q |
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| T |
52605133 |
aaatttttgagtcaaatagggaatattggtggcaaagaaaataaggagatgaacaagaaggaggtagaggaagcaaaaggaattgatttatattgttagt |
52605232 |
T |
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| Q |
101 |
gagggaaagagagagtgttataagaatgggacattaactatggtacctcggatatatgcagtaaaagactttgaatttgatacatcacatctctttggtc |
200 |
Q |
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| T |
52605233 |
gagggaaagagagagtgttataagaatgggacattaactatggtacctcggatatatgcagtaaaagactttgaatttgatacatcacatctctttggtc |
52605332 |
T |
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| Q |
201 |
agaaatttcaccaaacctcattaattcacttcaattctatggtgacaaaataatagcaatagtaatagtaatactattattttaaccaaatggaattttg |
300 |
Q |
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| T |
52605333 |
agaaatttcaccaaacctcattaattcacttcaattctatggtgacaaaataatagcaatagtaatagtaatactattattttaaccaaatggaattttg |
52605432 |
T |
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| Q |
301 |
aacataaatgat |
312 |
Q |
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| T |
52605433 |
aacataaatgat |
52605444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 237
Target Start/End: Original strand, 16906179 - 16906283
Alignment:
| Q |
124 |
gaatgggacattaactatggtacctcggatatatgcagtaaaagactttgaatttgatacatcacatctctttggtcagaaatttcaccaaacctcatta |
223 |
Q |
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| T |
16906179 |
gaataggacattaactatggtacctcggatat--gcagttaaaga----gaccttgatacatcacaa---tttggtcagaaattgtaccaaacctcatta |
16906269 |
T |
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| Q |
224 |
attcacttcaattc |
237 |
Q |
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| T |
16906270 |
attgacttcaattc |
16906283 |
T |
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