View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7574_low_7 (Length: 308)
Name: NF7574_low_7
Description: NF7574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7574_low_7 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 31998553 - 31998860
Alignment:
| Q |
1 |
caaatgtttgtgaactgcgtgcttgggaaaactaagctggagtacaaggatattgtcgtgtctgactgtcatgaattgttgttcagtatgtctaatgtta |
100 |
Q |
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| T |
31998553 |
caaatgtttgtgaactgcgtgcttgggaaaactaagctggagtacaaggatattgtcgtgtttgactgtcatgaattgttgttcagtatgtctaatgtta |
31998652 |
T |
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| Q |
101 |
gtttaatttatgttaagagatgtaacaatagagttgctcatagttttgtaggaattgctagaaattgtggtaaattgtattctctggtctctttgattac |
200 |
Q |
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| T |
31998653 |
gtttaatttatgttaagtgatgtaacaatagagttgctcatagttttgtaggaattgctagaaattgtggtaaattgtattctctggtctctttgattac |
31998752 |
T |
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| Q |
201 |
acaactaaatgttgatataatttgtgttgtcacagcttgattaaaacaaaaagaaataaataaaagattttgataaattaatatctatctggtttgtttt |
300 |
Q |
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| T |
31998753 |
acaactaaatgttgatataatttgtgttgtcacagcttgattaaaacaaaaagaaattaataaaagattttgagaaattaatatctatctggtttgtttt |
31998852 |
T |
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| Q |
301 |
tgtctaac |
308 |
Q |
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| T |
31998853 |
tgtctaac |
31998860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 42613096 - 42613200
Alignment:
| Q |
63 |
tgactgtcatgaattgttgttcagtatgtctaatgttagtttaatttatgttaagagatgtaacaatagagttgctcatagttttgtaggaattgctaga |
162 |
Q |
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| T |
42613096 |
tgactgacttgaattgatattcagtatgtctaatgttagtttatgtt----taagagatgtaacagtagagctgctcat-ggttggtaggaattgctaga |
42613190 |
T |
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| Q |
163 |
aattgtggta |
172 |
Q |
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| T |
42613191 |
aactgtggta |
42613200 |
T |
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