View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7575_high_3 (Length: 486)

Name: NF7575_high_3
Description: NF7575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7575_high_3
NF7575_high_3
[»] chr2 (21 HSPs)
chr2 (313-479)||(33366314-33366480)
chr2 (16-190)||(33366923-33367095)
chr2 (105-279)||(36949018-36949194)
chr2 (103-209)||(17474870-17474977)
chr2 (103-209)||(45153862-45153969)
chr2 (42-188)||(25715362-25715510)
chr2 (128-209)||(39447138-39447220)
chr2 (103-204)||(15995184-15995287)
chr2 (126-209)||(25217884-25217968)
chr2 (103-190)||(36874980-36875068)
chr2 (38-209)||(9847425-9847603)
chr2 (126-199)||(4268332-4268406)
chr2 (127-279)||(34517006-34517159)
chr2 (126-209)||(33452537-33452621)
chr2 (103-209)||(44465798-44465906)
chr2 (103-209)||(32187940-32188047)
chr2 (128-209)||(41510524-41510606)
chr2 (103-184)||(42894378-42894460)
chr2 (38-95)||(9847217-9847274)
chr2 (124-209)||(5507392-5507480)
chr2 (103-190)||(41854970-41855058)
[»] chr5 (37 HSPs)
chr5 (17-259)||(26319005-26319245)
chr5 (16-279)||(37094902-37095167)
chr5 (102-209)||(25746964-25747071)
chr5 (103-259)||(15799112-15799270)
chr5 (109-259)||(6156618-6156770)
chr5 (129-279)||(26190400-26190552)
chr5 (130-279)||(27212575-27212726)
chr5 (126-279)||(33487478-33487632)
chr5 (103-190)||(14111854-14111942)
chr5 (56-259)||(36359608-36359820)
chr5 (103-259)||(4064796-4064954)
chr5 (103-202)||(39524721-39524821)
chr5 (103-209)||(20891551-20891658)
chr5 (103-201)||(40620066-40620165)
chr5 (126-199)||(38692881-38692955)
chr5 (102-190)||(34440691-34440779)
chr5 (122-209)||(38871609-38871697)
chr5 (135-209)||(12465214-12465289)
chr5 (42-170)||(38640700-38640833)
chr5 (109-279)||(15957618-15957788)
chr5 (129-209)||(38372247-38372328)
chr5 (102-170)||(24203759-24203827)
chr5 (126-209)||(28083477-28083561)
chr5 (220-269)||(34440621-34440670)
chr5 (124-203)||(26095035-26095115)
chr5 (220-279)||(1350459-1350518)
chr5 (103-170)||(29862590-29862657)
chr5 (38-88)||(28445415-28445465)
chr5 (221-279)||(28445609-28445667)
chr5 (101-190)||(37183856-37183946)
chr5 (150-251)||(31929229-31929331)
chr5 (124-203)||(32842069-32842149)
chr5 (103-201)||(8032217-8032316)
chr5 (38-88)||(16429133-16429183)
chr5 (38-95)||(8739198-8739255)
chr5 (126-186)||(31221438-31221499)
chr5 (38-95)||(38640988-38641045)
[»] chr1 (31 HSPs)
chr1 (16-190)||(30829458-30829629)
chr1 (16-190)||(24471306-24471478)
chr1 (38-209)||(43319201-43319379)
chr1 (102-279)||(18583619-18583798)
chr1 (126-278)||(49786175-49786329)
chr1 (120-201)||(44573189-44573271)
chr1 (129-279)||(23442643-23442795)
chr1 (102-209)||(33611485-33611593)
chr1 (102-209)||(40908009-40908117)
chr1 (103-209)||(32817687-32817794)
chr1 (122-204)||(42545948-42546031)
chr1 (103-209)||(45567952-45568059)
chr1 (124-259)||(6223834-6223972)
chr1 (103-259)||(34162797-34162956)
chr1 (126-262)||(41584769-41584907)
chr1 (38-95)||(43318990-43319047)
chr1 (103-209)||(40650751-40650858)
chr1 (127-193)||(49677475-49677542)
chr1 (103-263)||(17000300-17000461)
chr1 (39-87)||(9445897-9445945)
chr1 (122-279)||(38950186-38950333)
chr1 (137-279)||(27794760-27794903)
chr1 (128-202)||(28866732-28866806)
chr1 (39-88)||(800603-800652)
chr1 (126-209)||(15069941-15070025)
chr1 (127-190)||(32542391-32542455)
chr1 (220-279)||(24471499-24471558)
chr1 (109-209)||(45046933-45047033)
chr1 (141-209)||(52744931-52745000)
chr1 (103-199)||(7011195-7011293)
chr1 (307-337)||(30829739-30829769)
[»] chr6 (16 HSPs)
chr6 (102-269)||(32035028-32035197)
chr6 (103-279)||(5699464-5699641)
chr6 (128-279)||(33413448-33413600)
chr6 (103-209)||(17264386-17264493)
chr6 (103-279)||(24604438-24604617)
chr6 (122-209)||(7412804-7412892)
chr6 (103-259)||(23406721-23406879)
chr6 (103-202)||(14587636-14587736)
chr6 (103-198)||(3717359-3717455)
chr6 (38-86)||(17500967-17501015)
chr6 (111-209)||(4508386-4508485)
chr6 (103-209)||(2813300-2813409)
chr6 (124-203)||(9905100-9905180)
chr6 (129-169)||(5638879-5638919)
chr6 (128-209)||(1945630-1945712)
chr6 (38-88)||(17501175-17501225)
[»] chr7 (24 HSPs)
chr7 (122-279)||(3304853-3305013)
chr7 (102-208)||(8154876-8154983)
chr7 (103-209)||(43737100-43737207)
chr7 (102-279)||(47202399-47202578)
chr7 (103-259)||(42925717-42925875)
chr7 (103-209)||(24042264-24042371)
chr7 (103-199)||(19225674-19225771)
chr7 (103-263)||(28230544-28230705)
chr7 (103-209)||(3936084-3936191)
chr7 (103-204)||(37518371-37518473)
chr7 (126-209)||(36408347-36408431)
chr7 (165-281)||(28346051-28346167)
chr7 (122-208)||(33574129-33574216)
chr7 (102-209)||(36629181-36629289)
chr7 (126-269)||(31642956-31643101)
chr7 (103-209)||(6467671-6467780)
chr7 (103-209)||(36468613-36468719)
chr7 (102-190)||(33151201-33151292)
chr7 (220-279)||(8214703-8214762)
chr7 (103-170)||(31985594-31985661)
chr7 (39-88)||(5730987-5731036)
chr7 (124-170)||(26555138-26555184)
chr7 (131-199)||(42877149-42877218)
chr7 (42-90)||(5731199-5731247)
[»] chr3 (36 HSPs)
chr3 (102-280)||(47301923-47302103)
chr3 (103-197)||(34821419-34821514)
chr3 (56-279)||(48303896-48304127)
chr3 (103-279)||(51258308-51258485)
chr3 (103-259)||(3902882-3903040)
chr3 (103-204)||(39149791-39149892)
chr3 (102-204)||(35142055-35142158)
chr3 (38-209)||(45244365-45244539)
chr3 (122-209)||(3937364-3937452)
chr3 (103-201)||(47740008-47740107)
chr3 (103-204)||(38977824-38977926)
chr3 (126-259)||(2358721-2358857)
chr3 (126-199)||(501240-501314)
chr3 (102-278)||(28872910-28873087)
chr3 (129-204)||(33438503-33438578)
chr3 (127-279)||(49096327-49096480)
chr3 (126-209)||(51540713-51540797)
chr3 (103-209)||(50716228-50716335)
chr3 (103-209)||(50796512-50796619)
chr3 (129-209)||(3352168-3352249)
chr3 (103-263)||(30721881-30722048)
chr3 (36-170)||(32024999-32025139)
chr3 (129-190)||(52777226-52777287)
chr3 (220-279)||(52777146-52777205)
chr3 (46-209)||(44085434-44085605)
chr3 (42-95)||(45244691-45244744)
chr3 (103-209)||(46622860-46622968)
chr3 (143-209)||(34821512-34821579)
chr3 (220-278)||(32024878-32024936)
chr3 (102-155)||(43473044-43473097)
chr3 (42-95)||(8735278-8735331)
chr3 (38-87)||(8735493-8735542)
chr3 (42-95)||(9087519-9087572)
chr3 (38-87)||(9087734-9087783)
chr3 (157-209)||(47123082-47123135)
chr3 (157-209)||(47130448-47130501)
[»] chr8 (21 HSPs)
chr8 (102-209)||(31519967-31520075)
chr8 (38-209)||(7971002-7971180)
chr8 (38-258)||(41530595-41530824)
chr8 (102-279)||(21004295-21004473)
chr8 (103-209)||(3094657-3094764)
chr8 (103-209)||(27928017-27928124)
chr8 (103-209)||(44106199-44106306)
chr8 (109-209)||(8885535-8885636)
chr8 (103-209)||(37248534-37248641)
chr8 (38-95)||(24627666-24627723)
chr8 (133-205)||(34853309-34853382)
chr8 (93-209)||(36404222-36404337)
chr8 (109-204)||(28916764-28916860)
chr8 (124-203)||(35676635-35676715)
chr8 (103-209)||(42280967-42281077)
chr8 (109-170)||(40994808-40994869)
chr8 (38-170)||(31234739-31234876)
chr8 (127-209)||(16310575-16310658)
chr8 (38-88)||(31234528-31234578)
chr8 (126-190)||(11698385-11698450)
chr8 (233-262)||(41328502-41328531)
[»] scaffold0137 (1 HSPs)
scaffold0137 (103-209)||(9573-9680)
[»] chr4 (30 HSPs)
chr4 (102-279)||(23523819-23523998)
chr4 (102-259)||(49396941-49397100)
chr4 (126-209)||(29822603-29822687)
chr4 (126-269)||(32441734-32441879)
chr4 (103-264)||(38536098-38536261)
chr4 (124-278)||(38416479-38416635)
chr4 (135-279)||(6228919-6229065)
chr4 (128-204)||(17933238-17933315)
chr4 (102-190)||(34972867-34972956)
chr4 (101-209)||(48319139-48319247)
chr4 (104-279)||(6003748-6003927)
chr4 (103-204)||(46440350-46440452)
chr4 (103-259)||(3703326-3703484)
chr4 (103-259)||(25539024-25539182)
chr4 (103-209)||(19835504-19835611)
chr4 (109-209)||(7931642-7931743)
chr4 (103-199)||(25491471-25491568)
chr4 (122-202)||(25752539-25752620)
chr4 (101-209)||(54631537-54631646)
chr4 (103-209)||(2506107-2506215)
chr4 (103-209)||(40703648-40703755)
chr4 (103-198)||(8106387-8106483)
chr4 (220-279)||(41413270-41413329)
chr4 (147-209)||(50392529-50392592)
chr4 (220-279)||(34972787-34972846)
chr4 (38-88)||(25140725-25140775)
chr4 (103-165)||(31582498-31582560)
chr4 (144-204)||(53894108-53894169)
chr4 (126-158)||(41413199-41413231)
chr4 (36-88)||(42660383-42660435)
[»] scaffold0027 (1 HSPs)
scaffold0027 (103-201)||(142039-142138)
[»] scaffold0508 (1 HSPs)
scaffold0508 (126-199)||(3494-3568)
[»] scaffold0182 (1 HSPs)
scaffold0182 (103-209)||(23098-23205)
[»] scaffold0016 (1 HSPs)
scaffold0016 (38-95)||(205816-205873)


Alignment Details
Target: chr2 (Bit Score: 151; Significance: 1e-79; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 313 - 479
Target Start/End: Complemental strand, 33366480 - 33366314
Alignment:
Q  313 atagggtgggaaaagtaatactcccgaaagaatgaaggtactataacaacaaaaatggaagatagagagattttgaattttgcttaataacgaaatttac 412  Q
    ||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33366480 ataggatggaaaaagtaatactcctgaaagaatgaaggtactataacaacaaaaatggaagatagagagattttgaattttgcttaataacgaaatttac 33366381  T
Q  413 tacatttattgatatattacgaaattactgtttaacccaagtctctttctcactctatttcttctca 479  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33366380 tacatttattgatatattacgaagttactgtttaacccaagtctctttctcactctatttcttctca 33366314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 33367095 - 33366923
Alignment:
Q  16 caaatgtgatatgaaactattattacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgcaccatag-aaaaaatggtgtt 114  Q
    ||||||||||||||||||||||   |||||||||| ||| |||||||||||| | ||||||||||||||||||| ||||||||| | |||||| ||||||    
T  33367095 caaatgtgatatgaaactatta---caaacatgttcagaattggtgctggtgctatccggattacgtaatccggtttgcaccatggaaaaaaaaggtgtt 33366999  T
Q  115 caggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaat 190  Q
     ||| | |||||||||||||||||||| ||| |||||||||||||   ||||||| ||||||  ||||||||||||    
T  33366998 aagggggttttcggattatgtaatccggaaatatcatgtaacgcgtcttatttttgaagttttcggattacaaaat 33366923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 105 - 279
Target Start/End: Original strand, 36949018 - 36949194
Alignment:
Q  105 aaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccg 203  Q
    |||||||||| ||| | ||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||   ||||||||||| ||||||||||||    
T  36949018 aaatggtgtttagggggtttccggattatgtaatccgaaaacatcatgtaacgcgccctattttttgaagtttgcagattacaaaatccggaaaaatccg 36949117  T
Q  204 taact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    ||||| |       || |||||||||||||||||| |||| | |||||||||||| | ||| ||||||  |||||||    
T  36949118 taactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatctggaaacctcaaatgcattttt 36949194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 17474870 - 17474977
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    |||||| ||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||||||||    
T  17474870 aaaaattgtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttaaagtttccggattacaaaatccggaaaaatc 17474969  T
Q  202 cgtaactc 209  Q
    ||| ||||    
T  17474970 cgttactc 17474977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 45153862 - 45153969
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| |||||||  ||||||||||||| |||||| |    
T  45153862 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccagattacaaaattcagaaaaacc 45153961  T
Q  202 cgtaactc 209  Q
    ||| ||||    
T  45153962 cgttactc 45153969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 42 - 188
Target Start/End: Complemental strand, 25715510 - 25715362
Alignment:
Q  42 aaacatgtttagatttggtgctggtgttgtccggattacgtaatccggatt------gcaccatagaaaaaatggtgttcaggcgattttcggattatgt 135  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||      |||||||  |||||||||||||       | ||||||||||||    
T  25715510 aaacatgtttagaattggtgttggtgttgtccggattacgtaatccggattgcatcagcaccatgaaaaaaatggtgtt-----tgtgttcggattatgt 25715416  T
Q  136 aatccgaaaacatcatgtaacgcgctctattttttaag-tttctggattacaaa 188  Q
    |||||||||| |||| ||||||||| |||| |||| || ||| |||||||||||    
T  25715415 aatccgaaaaaatcaggtaacgcgccctatcttttgagatttttggattacaaa 25715362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 128 - 209
Target Start/End: Complemental strand, 39447220 - 39447138
Alignment:
Q  128 gattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    |||||||||||||||||||||||||||| |||| ||||||||| ||||||  |||||||||||| ||||||||||||| ||||    
T  39447220 gattatgtaatccgaaaacatcatgtaatgcgccctattttttgaagttttcggattacaaaatccggaaaaatccgttactc 39447138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 103 - 204
Target Start/End: Original strand, 15995184 - 15995287
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt--aagtttctggattacaaaattcggaaaaat 200  Q
    ||||| |||||| ||| | |||||||||||||||||||| |||||||||| ||||||| |||||||||  |||||||  ||||||||||| ||||||||     
T  15995184 aaaaagggtgtttagggggttttcggattatgtaatccggaaacatcatgcaacgcgccctatttttttgaagtttcccgattacaaaatccggaaaaac 15995283  T
Q  201 ccgt 204  Q
    ||||    
T  15995284 ccgt 15995287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 25217884 - 25217968
Alignment:
Q  126 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    |||||||||||||||| |||||||||||||||| | ||||||||| ||||||| |||||||||||| || |||||||||| ||||    
T  25217884 cggattatgtaatccggaaacatcatgtaacgcaccctattttttgaagtttccggattacaaaatccgaaaaaatccgttactc 25217968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 36875068 - 36874980
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaat 190  Q
    |||||||||||||||  | ||| |||||||||||||||| |||||||||||||||||  ||||||||| ||||||| ||||||||||||    
T  36875068 aaaaatggtgttcagagggtttccggattatgtaatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaat 36874980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 38 - 209
Target Start/End: Original strand, 9847425 - 9847603
Alignment:
Q  38 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca------ccatagaaaaaatggtgttcaggcgattttcggatt 131  Q
    ||||||| ||||||||| |||||| ||||| ||||| ||||||||||||| |||||||      ||||  |||||| ||||||  |  | | ||||||||    
T  9847425 ttacaaatatgtttagaattggtgttggtgctgtccagattacgtaatccagattgcatcagcaccatgaaaaaaaaggtgtttggatggtgttcggatt 9847524  T
Q  132 atgtaatccgaaaacatcatgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactc 209  Q
    ||||||| |||||| |||||||||||||| | ||||||| || |||  ||||||||||||  ||||||||| |||||||    
T  9847525 atgtaatacgaaaaaatcatgtaacgcgcccaattttttgagattttcggattacaaaatctggaaaaatcagtaactc 9847603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 4268332 - 4268406
Alignment:
Q  126 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaa 199  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||| || |||||    
T  4268332 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttttggattacaaaatccgaaaaaa 4268406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 127 - 279
Target Start/End: Complemental strand, 34517159 - 34517006
Alignment:
Q  127 ggattatgtaatccgaaaacatcatgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactc-nnnnnnnactctata 224  Q
    ||||||||||||||||||| |||||||||||||| ||||||||| || ||| | ||||||||||| || |||||| ||||||||        ||  ||||    
T  34517159 ggattatgtaatccgaaaa-atcatgtaacgcgccctattttttgagatttttcgattacaaaatccgaaaaaattcgtaactcattttttcaccgtata 34517061  T
Q  225 acaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    ||||||||||||| || ||| || |||||||||||||||  |||||| |||||||    
T  34517060 acaaaggaaaacaccagttcggaatatgaaatccgaaaacttcaaaggcattttt 34517006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 33452537 - 33452621
Alignment:
Q  126 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    |||||||||| ||||| |||||||||||||||||| ||||||||| ||||||| | |||||||||| | ||||||||||| ||||    
T  33452537 cggattatgtgatccggaaacatcatgtaacgcgccctattttttgaagtttccgaattacaaaatccagaaaaatccgttactc 33452621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 44465798 - 44465906
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaac-atcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 200  Q
    ||||| |||||| ||| | ||| |||| ||||||||||  |||| |||||||||||||| ||||||||| ||||||| |||||||||||| |||||||||    
T  44465798 aaaaagggtgtttagggggtttccggagtatgtaatccataaactatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaat 44465897  T
Q  201 ccgtaactc 209  Q
    |||| ||||    
T  44465898 ccgttactc 44465906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 32187940 - 32188047
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||||||||||  || | ||| |||||||||||||||| |||||||||||||| ||| ||||||||| |||||||  ||||||||||| | |||||| |    
T  32187940 aaaaatggtgtttcgggggtttccggattatgtaatccggaaacatcatgtaactcgccctattttttgaagtttccagattacaaaatccagaaaaacc 32188039  T
Q  202 cgtaactc 209  Q
    ||| ||||    
T  32188040 cgttactc 32188047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 41510524 - 41510606
Alignment:
Q  128 gattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    |||||||||||||  |||||||||||||||||| ||||||||| ||||||| ||||||| ||||  |||||||||||| ||||    
T  41510524 gattatgtaatccagaaacatcatgtaacgcgccctattttttgaagtttccggattacgaaatctggaaaaatccgttactc 41510606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 42894460 - 42894378
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggatta 184  Q
    |||||||||||| ||| | ||| |||||||||||||||| |||||||||||||||||  ||| ||||||||||||| ||||||    
T  42894460 aaaaatggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgtcctatttttttaagtttccggatta 42894378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 9847217 - 9847274
Alignment:
Q  38 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca 95  Q
    ||||||||||||| ||| |||||| ||||||||||| |||||||||||||||||||||    
T  9847217 ttacaaacatgttcagaattggtgttggtgttgtccagattacgtaatccggattgca 9847274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 5507480 - 5507392
Alignment:
Q  124 ttcggattatgtaatccgaaaaca--tcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    |||||||||| ||||||||||| |  ||||||||||||   |||||||| |||||| |||||||||||||||| ||||||| |||||||    
T  5507480 ttcggattatataatccgaaaaaaaatcatgtaacgcgtcttattttttgaagtttttggattacaaaattcgaaaaaatctgtaactc 5507392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 41854970 - 41855058
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaat 190  Q
    ||||| |||||| ||| | ||| ||||| |||||||||| |||||||||||||| | | ||||||||| ||||||| ||||||||||||    
T  41854970 aaaaagggtgtttagggggtttccggatcatgtaatccggaaacatcatgtaacacaccctattttttgaagtttccggattacaaaat 41855058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 5e-57; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 26319245 - 26319005
Alignment:
Q  17 aaatgtgatatgaaactattattacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgcaccatagaaaaaatggtgttca 116  Q
    ||||||||||||||||| |||   |||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| |||||| |    
T  26319245 aaatgtgatatgaaactgtta---caaacatgttcagatttggtgctggtgctgtacggattacgtaatccggattgcaccatggaaaaaagggtgttta 26319149  T
Q  117 ggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnn 215  Q
    || | |||||||||||||||||||| |||||||||||||||| | |||||||  ||||||| |||| ||||||| ||||||||||||||||| |          
T  26319148 gggggttttcggattatgtaatccggaaacatcatgtaacgcaccctattttggaagtttccggataacaaaatccggaaaaatccgtaactccattttt 26319049  T
Q  216 nactctataacaaaggaaaacatcatttcagattatgaaatccg 259  Q
     || |||||||||||||||||| |||| |  |||||||||||||    
T  26319048 caccctataacaaaggaaaacaccattccgaattatgaaatccg 26319005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 16 - 279
Target Start/End: Original strand, 37094902 - 37095167
Alignment:
Q  16 caaatgtgatatgaaactattattacaaacatgtttagatttggtgctggtgt------tgtccggattacgtaatccggattgcaccatagaaaaaatg 109  Q
    |||||||||||||||||| |||   |||||||||| ||| ||||||||||||       ||| ||||||||||||||||||||||||||| ||||||| |    
T  37094902 caaatgtgatatgaaactgtta---caaacatgttcagaattggtgctggtgcagttgctgttcggattacgtaatccggattgcaccatggaaaaaagg 37094998  T
Q  110 gtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaattcggaaaaatccgtaact- 208  Q
    ||||| | | | ||||||||||  |||||||| ||||||||||||||||||  ||||||||||||||  |||||||||||| |||||||||||||||||     
T  37094999 gtgtttaaggg-ttttcggatttggtaatccggaaacatcatgtaacgcgccttattttttaagttttcggattacaaaatccggaaaaatccgtaactc 37095097  T
Q  209 cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    |       || |||||||||||| ||||| |||| | ||||||||||| |||||| ||||| | |||||||    
T  37095098 catttttcaccctataacaaagg-aaacaccattccggattatgaaattcgaaaacctcaagggcattttt 37095167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 102 - 209
Target Start/End: Complemental strand, 25747071 - 25746964
Alignment:
Q  102 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaattcggaaaaatc 201  Q
    ||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||    
T  25747071 aaaaaatggtgtttaggggatttccggattatgtaatccgaaaacatcatgtaacgcgccctatttttgaagtttccggattagaaaatccggaaaaatc 25746972  T
Q  202 cgtaactc 209  Q
    ||| ||||    
T  25746971 cgttactc 25746964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 103 - 259
Target Start/End: Complemental strand, 15799270 - 15799112
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | |||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| |||||||| |    
T  15799270 aaaaagggtgtttagggggttttcggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacc 15799171  T
Q  202 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 259  Q
    ||||||| |       || |||||||||||||||| | |||| | ||||||||||||||    
T  15799170 cgtaactccatttttcaccctataacaaaggaaaataccattccggattatgaaatccg 15799112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 109 - 259
Target Start/End: Complemental strand, 6156770 - 6156618
Alignment:
Q  109 ggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaac 207  Q
    |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| |||||||| |||||||    
T  6156770 ggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgtaac 6156671  T
Q  208 t-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 259  Q
    | |       ||  ||||||||||||||||| |||| | ||||||||||||||    
T  6156670 tccatttttcaccatataacaaaggaaaacaccattccggattatgaaatccg 6156618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 129 - 279
Target Start/End: Original strand, 26190400 - 26190552
Alignment:
Q  129 attatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctataac 226  Q
    |||||||||||||||||||||||||||||| | ||||||||| ||||||| |||||||||||| ||||||||||||||||| |       || | ||||     
T  26190400 attatgtaatccgaaaacatcatgtaacgcaccctattttttgaagtttccggattacaaaatccggaaaaatccgtaactccatttttcacccgataag 26190499  T
Q  227 aaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    ||||||||||| |||| ||||||||||| || | ||| ||||| |||||||||    
T  26190500 aaaggaaaacaccattccagattatgaagtctggaaacctcaaggacattttt 26190552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 130 - 279
Target Start/End: Complemental strand, 27212726 - 27212575
Alignment:
Q  130 ttatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttct-ggattacaaaattcggaaaaatccgtaactcnnnnnnn-actctataaca 227  Q
    |||||||||||||||| |||||||||||| | ||||||||| || || | |||||||||||| || ||||| |||||||||        || ||||||||    
T  27212726 ttatgtaatccgaaaaaatcatgtaacgcaccctattttttgagattttcggattacaaaatccgaaaaaacccgtaactcattttttcaccctataaca 27212627  T
Q  228 aaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    ||||||||||||| ||| ||||||||||||||||||| |||||| |||||||    
T  27212626 aaggaaaacatcagttcggattatgaaatccgaaaatttcaaaggcattttt 27212575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 126 - 279
Target Start/End: Complemental strand, 33487632 - 33487478
Alignment:
Q  126 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctat 223  Q
    |||||||||||| ||||||||||||| |||||||| ||||||||| ||||||  ||||||||||||||||||||| |||||||| |       || || |    
T  33487632 cggattatgtaacccgaaaacatcatataacgcgccctattttttgaagttttcggattacaaaattcggaaaaacccgtaactccatttttcaccctgt 33487533  T
Q  224 aacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    |||||||||||||| |||| | |||||||||||||| ||| ||||| |||||||||    
T  33487532 aacaaaggaaaacaccattccggattatgaaatccggaaa-ctcaaggacattttt 33487478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 14111942 - 14111854
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaat 190  Q
    ||||| |||||| ||| ||||||| ||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  14111942 aaaaagggtgtttaggggattttcagattatgtaatccaaaaacatcatgtaacgcgccctattttttgaagtttctggattacaaaat 14111854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 56 - 259
Target Start/End: Original strand, 36359608 - 36359820
Alignment:
Q  56 ttggtgctggtgttgtccggattacgtaatccggattgca------ccat-agaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacat 148  Q
    |||||| |||||||||| ||||||||||||| ||||||||      |||| | |||||| |||||| ||| | ||||| |||||||||||||||||| ||    
T  36359608 ttggtgatggtgttgtctggattacgtaatctggattgcatcaacaccatgaaaaaaaaaggtgtttagggggttttcagattatgtaatccgaaaaaat 36359707  T
Q  149 catgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactcnnnnnnnactctataacaaaggaaaaca-tcatttcag 246  Q
    ||||| |||||  ||||||||| || ||||||||||||||||| || |||| ||||||||||       || || ||||||| |||||||  |||| |||    
T  36359708 catgttacgcgtcctattttttgagatttctggattacaaaatccgaaaaattccgtaactcatttttcaccctttaacaaaagaaaacacccattccag 36359807  T
Q  247 attatgaaatccg 259  Q
    |||||||||||||    
T  36359808 attatgaaatccg 36359820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 103 - 259
Target Start/End: Original strand, 4064796 - 4064954
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | ||| |||||||||||||||| ||||||||| |||| ||| ||||||||| ||||||| |||||||| ||| |||||||| |    
T  4064796 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatctaacacgccctattttttaaagtttccggattacataatccggaaaaacc 4064895  T
Q  202 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 259  Q
    ||||||| |       || |||||||||||||||||| |||| | ||||||||||||||    
T  4064896 cgtaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatccg 4064954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 103 - 202
Target Start/End: Complemental strand, 39524821 - 39524721
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | ||| || |||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||||||||| ||||||||||    
T  39524821 aaaaagggtgtttagggggtttccgaattatgtaatccgaaaacatcatgtaacacgccctatttttttaagtttccggattacaaaatccggaaaaatc 39524722  T
Q  202 c 202  Q
    |    
T  39524721 c 39524721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 20891658 - 20891551
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | ||||||||||||||||| || ||||||||||||||  || ||||||||| ||||||| |||||||||||| ||||||||||    
T  20891658 aaaaagggtgtttagggggttttcggattatgtaattcggaaacatcatgtaacatgccctattttttgaagtttccggattacaaaatccggaaaaatc 20891559  T
Q  202 cgtaactc 209  Q
    ||| ||||    
T  20891558 cgttactc 20891551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 40620066 - 40620165
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||||| |||| ||| | ||| |||||||||||||||||||||||||| ||||| || ||||||||| ||||||| |||||||||||| ||||||||||    
T  40620066 aaaaatgatgtttagggggtttccggattatgtaatccgaaaacatcatataacgtgccctattttttgaagtttccggattacaaaatccggaaaaatc 40620165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 38692881 - 38692955
Alignment:
Q  126 cggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaa 199  Q
    |||||||||||||||| |||||||| ||||||||| ||| ||||||||||||| |||||||||||||||||||||    
T  38692881 cggattatgtaatccggaaacatcacgtaacgcgccctatttttttaagtttccggattacaaaattcggaaaaa 38692955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 34440779 - 34440691
Alignment:
Q  102 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaat 190  Q
    |||||| |||||| ||| | ||||||||||||| ||||||||||||||||||||||||  |||||||| ||||||  ||||||||||||    
T  34440779 aaaaaagggtgtttagggggttttcggattatgcaatccgaaaacatcatgtaacgcgtcctatttttgaagttttcggattacaaaat 34440691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 38871697 - 38871609
Alignment:
Q  122 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctatttt-ttaagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    |||||||||||||||||||| |||||||||||||||| | ||||||| | ||||||  |||||||||||| ||||||||||||| ||||    
T  38871697 ttttcggattatgtaatccggaaacatcatgtaacgccccctattttatgaagttttcggattacaaaatccggaaaaatccgttactc 38871609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 135 - 209
Target Start/End: Original strand, 12465214 - 12465289
Alignment:
Q  135 taatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    ||||||| |||||||||||||| ||| ||||||||| ||||||| |||||||||||| ||||||||||||||||||    
T  12465214 taatccggaaacatcatgtaacacgccctattttttgaagtttccggattacaaaatccggaaaaatccgtaactc 12465289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 170
Target Start/End: Complemental strand, 38640833 - 38640700
Alignment:
Q  42 aaacatgtttagatttggtgctggtgttgtccggattacgtaatccggatt------gcaccatagaaaaaatggtgttcaggcgattttcggattatgt 135  Q
    ||||||||| ||| |||||| ||||| ||||||||||||||||||||||||      |||||||  |||||| |||||| ||| | | ||||||||||||    
T  38640833 aaacatgttcagaattggtgttggtgctgtccggattacgtaatccggattgcatcagcaccatgaaaaaaagggtgtttagg-ggtgttcggattatgt 38640735  T
Q  136 aatccgaaaacatcatgtaacgcgctctatttttt 170  Q
    |||||||| | ||||| |||||||| |||||||||    
T  38640734 aatccgaataaatcatttaacgcgccctatttttt 38640700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 109 - 279
Target Start/End: Complemental strand, 15957788 - 15957618
Alignment:
Q  109 ggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttt-taagtttctggattacaaaattcggaaaaatccgtaac 207  Q
    |||||| ||| | ||| |||||||| ||||||| |||||||||||||  ||| ||||||||  ||||||| | |||||||||| ||||||||||| | ||    
T  15957788 ggtgtttagggggtttccggattatttaatccggaaacatcatgtaatacgccctatttttcgaagtttccgaattacaaaatccggaaaaatccattac 15957689  T
Q  208 tcnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    ||       || || ||||||| ||||||| |||||| |||||| ||||||||||| ||||||| |||||||    
T  15957688 tcatttttcaccctttaacaaaagaaaacaccatttcggattataaaatccgaaaa-ctcaaaggcattttt 15957618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 38372328 - 38372247
Alignment:
Q  129 attatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    ||||||||||||| |||||||||||||| ||| ||| ||||||||||||| |||||||||||| | ||||||||||| ||||    
T  38372328 attatgtaatccggaaacatcatgtaacccgccctatttttttaagtttccggattacaaaatccagaaaaatccgttactc 38372247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 24203759 - 24203827
Alignment:
Q  102 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt 170  Q
    |||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| |||||||||    
T  24203759 aaaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctatttttt 24203827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 28083477 - 28083561
Alignment:
Q  126 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    |||||||||||||||| ||| ||||||||| |||| ||||||||| || |||| |||||||||||| |||||||| |||| ||||    
T  28083477 cggattatgtaatccggaaatatcatgtaatgcgccctattttttgaattttccggattacaaaatccggaaaaacccgttactc 28083561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 269
Target Start/End: Complemental strand, 34440670 - 34440621
Alignment:
Q  220 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaa 269  Q
    ||||||||||||||||||||||||||||||||||||| || ||| |||||    
T  34440670 ctataacaaaggaaaacatcatttcagattatgaaattcggaaacctcaa 34440621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 26095115 - 26095035
Alignment:
Q  124 ttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccg 203  Q
    |||||||||||||||||||||| |  |||||||||||||||||||||   |||| |||||||||||||  | |||||||||    
T  26095115 ttcggattatgtaatccgaaaaaaatatgtaacgcgctctattttttgtggtttttggattacaaaatcagaaaaaatccg 26095035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 279
Target Start/End: Original strand, 1350459 - 1350518
Alignment:
Q  220 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    |||||||||||||||||| || ||| ||||||||||||||||||| |||| | |||||||    
T  1350459 ctataacaaaggaaaacaccagttcggattatgaaatccgaaaatttcaagggcattttt 1350518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 29862657 - 29862590
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt 170  Q
    |||||||||||| ||| | ||| |||||||||||||||| ||||||||  |||||||| |||||||||    
T  29862657 aaaaatggtgtttagggggtttccggattatgtaatccggaaacatcacctaacgcgccctatttttt 29862590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 28445415 - 28445465
Alignment:
Q  38 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccg 88  Q
    ||||||||||||| ||| || ||||||||| ||||||||||||||||||||    
T  28445415 ttacaaacatgttcagaattcgtgctggtgatgtccggattacgtaatccg 28445465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 28445609 - 28445667
Alignment:
Q  221 tataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    |||||||||||||||||| | ||| |||| | ||||||||||||||||| |||||||||    
T  28445609 tataacaaaggaaaacattagttcggattttaaaatccgaaaatctcaaggacattttt 28445667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 37183856 - 37183946
Alignment:
Q  101 gaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaat 190  Q
    ||||||| |||||| ||  | ||| |||||||||||||| ||||| ||||||||||| || ||||||||| |||||||  |||||||||||    
T  37183856 gaaaaaagggtgtttagagggtttccggattatgtaatctgaaaatatcatgtaacgtgccctattttttgaagtttcaagattacaaaat 37183946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 150 - 251
Target Start/End: Original strand, 31929229 - 31929331
Alignment:
Q  150 atgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactcnnnnnnnactctataacaaaggaaaacatcatttcagat 248  Q
    |||||| |||| ||||||||| || ||||||||||||||||| ||||||||||||| ||||       || || ||||||| |||||||||||| | |||    
T  31929229 atgtaatgcgccctattttttgaaatttctggattacaaaatccggaaaaatccgttactcatttttcaccctttaacaaaagaaaacatcattccggat 31929328  T
Q  249 tat 251  Q
    |||    
T  31929329 tat 31929331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 32842069 - 32842149
Alignment:
Q  124 ttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccg 203  Q
    ||||||||||||||||   ||| || || || ||||| ||||||||| ||||||| |||||||||||| ||||||||||||    
T  32842069 ttcggattatgtaatcttgaaaaattatctagcgcgccctattttttgaagtttccggattacaaaatccggaaaaatccg 32842149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 201
Target Start/End: Complemental strand, 8032316 - 8032217
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | | |||||||||||||||||| ||| ||||||||| | || ||||||||| || ||||  ||||||||||| || |||||||    
T  8032316 aaaaagggtgtttaggaggtgttcggattatgtaatccggaaaaatcatgtaatgtgccctattttttgaaatttccagattacaaaatccgaaaaaatc 8032217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 16429183 - 16429133
Alignment:
Q  38 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccg 88  Q
    ||||||||||||||||| |||||| ||||| |||  |||||||||||||||    
T  16429183 ttacaaacatgtttagaattggtgttggtgctgtttggattacgtaatccg 16429133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 8739198 - 8739255
Alignment:
Q  38 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca 95  Q
    ||||||||||||| ||| ||||||||||||  ||  ||||||||||||||| ||||||    
T  8739198 ttacaaacatgttcagaattggtgctggtgcagtttggattacgtaatccgaattgca 8739255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 31221438 - 31221499
Alignment:
Q  126 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattaca 186  Q
    |||||||||||||||  ||||||||||||||||||  |||||||| ||||||  ||||||||    
T  31221438 cggattatgtaatccagaaacatcatgtaacgcgccatattttttgaagttttcggattaca 31221499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 38641045 - 38640988
Alignment:
Q  38 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca 95  Q
    ||||||||||||| ||| |||||| ||||| |||||| |||| ||||||| |||||||    
T  38641045 ttacaaacatgttcagaattggtgttggtgctgtccgaattatgtaatccagattgca 38640988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 7e-50; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 30829458 - 30829629
Alignment:
Q  16 caaatgtgatatgaaactattattacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgcaccatagaaaaaatggtgttc 115  Q
    |||||||||||||||||| |||   |||||||||| ||| | |||||||||| |||||||||||||||||  |||||||||||| ||||||| ||||||     
T  30829458 caaatgtgatatgaaactgtta---caaacatgttcagaatcggtgctggtgctgtccggattacgtaatttggattgcaccatggaaaaaagggtgttt 30829554  T
Q  116 aggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaat 190  Q
    ||| | ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||    
T  30829555 agggggttttcggattatgtaatccgaaaacatcatgtaacgcgccctatttttgaagtttccggattacaaaat 30829629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 16 - 190
Target Start/End: Original strand, 24471306 - 24471478
Alignment:
Q  16 caaatgtgatatgaaactattattacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgcaccatagaaaaaatggtgttc 115  Q
    |||||||||||||||||| |||   |||||||||| ||| ||| |||||||| |||||| ||||||||||||||||| |||||| ||||||| ||||||     
T  24471306 caaatgtgatatgaaactgtta---caaacatgttcagaattgatgctggtgctgtccgaattacgtaatccggattacaccatggaaaaaagggtgttt 24471402  T
Q  116 aggcga-ttttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaat 190  Q
    ||| |  |||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||    
T  24471403 aggggggttttcggattatgtaatccggaaacatcatgtaacgcgccctatttttgaagtttctggattacaaaat 24471478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 38 - 209
Target Start/End: Original strand, 43319201 - 43319379
Alignment:
Q  38 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca------ccatagaaaaaatggtgttcaggcgattttcggatt 131  Q
    ||||||||||||| ||| |||||| ||||| |||||||||||||||||||||||||||      ||||  ||||||  ||||| ||| | ||||||||||    
T  43319201 ttacaaacatgttcagaattggtgatggtgctgtccggattacgtaatccggattgcatcagcaccatgaaaaaaagagtgtttagggggttttcggatt 43319300  T
Q  132 atgtaatccgaaaacatcatgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactc 209  Q
    |||||||||||||| ||||||||||||||  |||||||| || |||| |||||||||||| ||||||||||||||||||    
T  43319301 atgtaatccgaaaaaatcatgtaacgcgccatatttttttagatttccggattacaaaatccggaaaaatccgtaactc 43319379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 102 - 279
Target Start/End: Original strand, 18583619 - 18583798
Alignment:
Q  102 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaat 200  Q
    |||||| |||||| ||| | ||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||  ||||||||||| ||||||| |    
T  18583619 aaaaaaaggtgtttagggggtttccggattatgtaatccgaaaacatcatgtaacgcgccctatttttttaagtttccagattacaaaatccggaaaagt 18583718  T
Q  201 ccgtaac-tcnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    ||||||| ||       || |||||||||||||||||| |||| | |||||||||||||||||| ||||| | |||||||    
T  18583719 ccgtaacttcatttttcaccctataacaaaggaaaacaccattccggattatgaaatccgaaaacctcaagggcattttt 18583798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 126 - 278
Target Start/End: Complemental strand, 49786329 - 49786175
Alignment:
Q  126 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctat 223  Q
    |||||||||||||||| |||||||||||||||||  ||||||||| ||||||  ||||| |||||| ||||||||||| ||||| |       || ||||    
T  49786329 cggattatgtaatccggaaacatcatgtaacgcgtcctattttttaaagttttcggattgcaaaatccggaaaaatccataactccatttttcaccctat 49786230  T
Q  224 aacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacatttt 278  Q
    || |||||||||||  ||| |||||||||||||||| ||| ||||||||||||||    
T  49786229 aataaaggaaaacacaattccagattatgaaatccggaaacctcaaagacatttt 49786175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 120 - 201
Target Start/End: Original strand, 44573189 - 44573271
Alignment:
Q  120 gattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||| || |||||||    
T  44573189 gatttccggattatgtaatccgaaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccgaaaaaatc 44573271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 129 - 279
Target Start/End: Complemental strand, 23442795 - 23442643
Alignment:
Q  129 attatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctataac 226  Q
    ||||| ||||||| |||||||||||||||||| ||||||||| |||||||  ||||| ||||| ||||||||||||||||| |       ||  ||||||    
T  23442795 attatataatccggaaacatcatgtaacgcgccctattttttgaagtttccagattataaaatccggaaaaatccgtaactccatttttcaccttataac 23442696  T
Q  227 aaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    |||||||||||||||| | ||| |||||||||| ||| ||||| | |||||||    
T  23442695 aaaggaaaacatcattccggataatgaaatccggaaacctcaagggcattttt 23442643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 102 - 209
Target Start/End: Original strand, 33611485 - 33611593
Alignment:
Q  102 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 200  Q
    |||||| |||||| ||| | ||| | |||||||||||||| |||||||||||||||||| ||||||||| |||||||   |||||||||| || ||||||    
T  33611485 aaaaaagggtgtttagggggtttccagattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccaaattacaaaatccgaaaaaat 33611584  T
Q  201 ccgtaactc 209  Q
    |||||||||    
T  33611585 ccgtaactc 33611593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 102 - 209
Target Start/End: Original strand, 40908009 - 40908117
Alignment:
Q  102 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 200  Q
    |||||| |||||| ||| | ||||||||||||||||||||||||||||||||| | ||| | ||||||| ||||||| ||||| ||||||||  ||||||    
T  40908009 aaaaaagggtgtttagggggttttcggattatgtaatccgaaaacatcatgtagcacgcccaattttttgaagtttccggattgcaaaattctaaaaaat 40908108  T
Q  201 ccgtaactc 209  Q
    |||| ||||    
T  40908109 ccgttactc 40908117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 32817687 - 32817794
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | |||||||||||||||||| | ||||||||||||| |||| ||||||||| ||||||| ||||||||||||  ||||||| |    
T  32817687 aaaaagggtgtttagggggttttcggattatgtaatctggaaacatcatgtaatgcgccctattttttgaagtttccggattacaaaatctggaaaaacc 32817786  T
Q  202 cgtaactc 209  Q
    ||| ||||    
T  32817787 cgttactc 32817794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 122 - 204
Target Start/End: Complemental strand, 42546031 - 42545948
Alignment:
Q  122 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgt 204  Q
    ||||||||| |||| ||||| |||||||||||||||||  ||||||||| ||||||| |||||||||||| |||||||||||||    
T  42546031 ttttcggatcatgttatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaatccggaaaaatccgt 42545948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 45567952 - 45568059
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | ||||||||| ||||||||| |||| |||||||| ||||| ||||||||| ||||||| | ||||||||||||||||||| |    
T  45567952 aaaaagggtgtttagggggttttcggatcatgtaatccaaaaatatcatgtagcgcgccctattttttgaagtttccgaattacaaaattcggaaaaacc 45568051  T
Q  202 cgtaactc 209  Q
    ||| ||||    
T  45568052 cgttactc 45568059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 124 - 259
Target Start/End: Original strand, 6223834 - 6223972
Alignment:
Q  124 ttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt--aagtttctggattacaaaattcggaaaaatccgtaactc-nnnnnnnactc 220  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||||||  ||||||  |||||  |||||||| |||||||||||||||        || |    
T  6223834 ttcggattatgtaatccaaaaaaatcatgtaatgcgctctatttttttgaagttttcggattgaaaaattcgaaaaaatccgtaactcattttttcaccc 6223933  T
Q  221 tataacaaaggaaaacatcatttcagattatgaaatccg 259  Q
    |||||||||||||||||  | ||| ||||||||||||||    
T  6223934 tataacaaaggaaaacacgagttcggattatgaaatccg 6223972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 103 - 259
Target Start/End: Original strand, 34162797 - 34162956
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcgg-aaaaat 200  Q
    ||||| |||||| ||| | ||| |||||||||||||||| ||||||||| |||| ||| ||||||||| ||||||| |||||||||||| ||| |||||     
T  34162797 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatctaacacgccctattttttgaagtttccggattacaaaatccggaaaaaac 34162896  T
Q  201 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 259  Q
    ||| |||| |       || |||||||||||||||||| |||| | ||||||||||||||    
T  34162897 ccgcaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatccg 34162956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 126 - 262
Target Start/End: Original strand, 41584769 - 41584907
Alignment:
Q  126 cggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaatccgtaac-tcnnnnnnnactctat 223  Q
    |||||||||||||||||||||||||||||||  || ||| ||||| || |||| |||||||||||| | |||||| ||||||| ||       || ||||    
T  41584769 cggattatgtaatccgaaaacatcatgtaacatgccctagtttttgaaatttccggattacaaaatccagaaaaacccgtaacttcatttttcaccctat 41584868  T
Q  224 aacaaaggaaaacatcatttcagattatgaaatccgaaa 262  Q
    |||||| ||||||| |||| | |||||||||||||||||    
T  41584869 aacaaaagaaaacaccattcctgattatgaaatccgaaa 41584907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 43318990 - 43319047
Alignment:
Q  38 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca 95  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||    
T  43318990 ttacaaacatgttcagaattggtgctggtgttgtccagattacgtaatccggattgca 43319047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 40650751 - 40650858
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    |||||||||||| | | | ||| |||||||||||||||  |||||||||||||| ||| ||||||||| ||||||| |||||||||| | || |||||||    
T  40650751 aaaaatggtgtttaaggggtttccggattatgtaatccagaaacatcatgtaacacgccctattttttgaagtttccggattacaaattccgaaaaaatc 40650850  T
Q  202 cgtaactc 209  Q
    ||| ||||    
T  40650851 cgttactc 40650858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 49677542 - 49677475
Alignment:
Q  127 ggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcg 193  Q
    ||||||||||||||| |||||||||||||||||| ||||||||| |||||||  ||||||||||||||    
T  49677542 ggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccagattacaaaattcg 49677475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 263
Target Start/End: Complemental strand, 17000461 - 17000300
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatt-ttttaagtttctggattacaaaattcggaaaaatc 201  Q
    |||||||||||| ||| | ||| |||||||||||||||  ||||||||| ||||| || ||||| ||| | ||||| | |||||||||| |||||||| |    
T  17000461 aaaaatggtgtttagggggtttccggattatgtaatccagaaacatcatctaacgtgccctattatttgatgtttccgaattacaaaatccggaaaaa-c 17000363  T
Q  202 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaa 263  Q
    ||||||| |       || |||||||||||||||||| ||||   ||||||||||||||||||    
T  17000362 cgtaactccatttttcaccctataacaaaggaaaacaccattctggattatgaaatccgaaaa 17000300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 9445897 - 9445945
Alignment:
Q  39 tacaaacatgtttagatttggtgctggtgttgtccggattacgtaatcc 87  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  9445897 tacaaagatgtttagaattggtgctggtgttgtccggattacgtaatcc 9445945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 122 - 279
Target Start/End: Complemental strand, 38950333 - 38950186
Alignment:
Q  122 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaattcggaaaaatccgtaactcnnnnnnnactct 221  Q
    |||||||||||||||||| ||||| |||||||||||||| |||||||         |||||||||||||  |||||||||||||||||       ||| |    
T  38950333 ttttcggattatgtaatctgaaaaaatcatgtaacgcgccctatttt---------tggattacaaaatctggaaaaatccgtaactcatttttcact-t 38950244  T
Q  222 ataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
     ||||||||||||| | |||| |  ||||| ||||||| ||| |||||||||||||||    
T  38950243 ttaacaaaggaaaataccattccgaattataaaatccggaaacctcaaagacattttt 38950186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 137 - 279
Target Start/End: Complemental strand, 27794903 - 27794760
Alignment:
Q  137 atccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaattcggaaaaatccgtaactcnnnnnnn-actctataacaaaggaaaa 235  Q
    ||||||||| ||||||||| |||| |||||||| |  |||  ||||||||||||  | |||||||| ||||||        || ||||||||||||||||    
T  27794903 atccgaaaaaatcatgtaaagcgccctatttttgagattttcggattacaaaatctgaaaaaatccataactcattttttcaccctataacaaaggaaaa 27794804  T
Q  236 catcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    || || ||| ||||||||||||||||||| |||| | |||||||    
T  27794803 caccagttcggattatgaaatccgaaaatttcaagggcattttt 27794760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 128 - 202
Target Start/End: Original strand, 28866732 - 28866806
Alignment:
Q  128 gattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaattcggaaaaatcc 202  Q
    |||||||||||||| ||| |||||||| ||||| ||||||||||   ||| |||||||||||| |||||||||||    
T  28866732 gattatgtaatccggaaaaatcatgtagcgcgccctattttttatagttccggattacaaaatccggaaaaatcc 28866806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 800603 - 800652
Alignment:
Q  39 tacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccg 88  Q
    ||||||||||||| || |||||| ||||||||||||||||||||||||||    
T  800603 tacaaacatgttttgaattggtgttggtgttgtccggattacgtaatccg 800652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 15069941 - 15070025
Alignment:
Q  126 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    |||||||| ||||||| |||||||||||||| ||  ||||||||| ||||||| |||||||||||| || ||| |||||| ||||    
T  15069941 cggattatataatccggaaacatcatgtaacacgtcctattttttgaagtttccggattacaaaatccgaaaatatccgttactc 15070025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 32542455 - 32542391
Alignment:
Q  127 ggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaat 190  Q
    ||||||||||||||| |||||||||||||||| | ||||||||| ||| ||| ||||||||||||    
T  32542455 ggattatgtaatccgtaaacatcatgtaacgcaccctattttttgaagattccggattacaaaat 32542391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 279
Target Start/End: Original strand, 24471499 - 24471558
Alignment:
Q  220 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    |||||||||||||||||| |||| | |||||||||||||| ||| ||||| |||||||||    
T  24471499 ctataacaaaggaaaacaccattccggattatgaaatccggaaacctcaaggacattttt 24471558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 45046933 - 45047033
Alignment:
Q  109 ggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaac 207  Q
    |||||| ||| | ||| ||||||||||||| || ||||||||||||| | || || |||||| ||||||  |||||||||||| ||||||||||||| ||    
T  45046933 ggtgtttagggggtttccggattatgtaattcggaaacatcatgtaatg-gccctcttttttgaagttttcggattacaaaatccggaaaaatccgttac 45047031  T
Q  208 tc 209  Q
    ||    
T  45047032 tc 45047033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 52744931 - 52745000
Alignment:
Q  141 gaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    ||||| |||||||| ||||| ||||||||| ||||||   ||||||||||||||||||||||||| ||||    
T  52744931 gaaaatatcatgtagcgcgccctattttttgaagttttcagattacaaaattcggaaaaatccgttactc 52745000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 7011293 - 7011195
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt--aagtttctggattacaaaattcggaaaaa 199  Q
    ||||||| |||| ||| | |||||||||||  | || || |||||||||||||||||| || ||||||  ||||||| |||||||||||| | ||||||    
T  7011293 aaaaatgatgtttagggggttttcggattacatgattcggaaacatcatgtaacgcgccctttttttttgaagtttccggattacaaaatccagaaaaa 7011195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 337
Target Start/End: Original strand, 30829739 - 30829769
Alignment:
Q  307 aagcttatagggtgggaaaagtaatactccc 337  Q
    |||||||||||||||||||||||||||||||    
T  30829739 aagcttatagggtgggaaaagtaatactccc 30829769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 102 - 269
Target Start/End: Complemental strand, 32035197 - 32035028
Alignment:
Q  102 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 200  Q
    |||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| |||||||||    
T  32035197 aaaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaat 32035098  T
Q  201 ccgtaactcnnnnnnnactc-tataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaa 269  Q
    |||||||||         || ||||||||| |||||||||||| |||||||||||||||||||| |||||    
T  32035097 ccgtaactccatttttcatcatataacaaaagaaaacatcattccagattatgaaatccgaaaacctcaa 32035028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 103 - 279
Target Start/End: Complemental strand, 5699641 - 5699464
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||||| ||||| |    
T  5699641 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttcaagtttccggattacaaaattcgaaaaaacc 5699542  T
Q  202 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    ||||||| |       || |||||||||||||||||| |||| | |||||||||||||| ||| |||||||||||||||    
T  5699541 cgtaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatccggaaa-ctcaaagacattttt 5699464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 128 - 279
Target Start/End: Original strand, 33413448 - 33413600
Alignment:
Q  128 gattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctataac 226  Q
    |||||||||||| | |||||||||||||||||| |||||||| ||||||| |||||||||||||| ||||||| ||||||| |       || |||||||    
T  33413448 gattatgtaatctggaaacatcatgtaacgcgccctatttttgaagtttccggattacaaaattcagaaaaattcgtaactccatttttcaccctataac 33413547  T
Q  227 aaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    ||||||||||| |||| | |||||||||||||| |||  |||||| |||||||    
T  33413548 aaaggaaaacaccattccggattatgaaatccggaaacatcaaaggcattttt 33413600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 17264493 - 17264386
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| |||||||  ||||||||||| ||||||||||    
T  17264493 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccagattacaaaatccggaaaaatc 17264394  T
Q  202 cgtaactc 209  Q
    ||| ||||    
T  17264393 cgttactc 17264386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 103 - 279
Target Start/End: Original strand, 24604438 - 24604617
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    |||||||||||| | | | | |||||||||||||||||||| | |||||||||  ||| ||||||||| |||||| ||||||||||||||||||||||||    
T  24604438 aaaaatggtgtttaaggggtgttcggattatgtaatccgaagaaatcatgtaagacgccctattttttgaagtttttggattacaaaattcggaaaaatc 24604537  T
Q  202 cgtaactc--nnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    | ||||||         || |||| ||||||||||||| || ||| || |||||||||||||||  |||| |||||||||    
T  24604538 cttaactcatttttttcaccctatgacaaaggaaaacaccagttcggaatatgaaatccgaaaacttcaaggacattttt 24604617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 7412892 - 7412804
Alignment:
Q  122 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    |||||||||||||||||||| |||||||||||||| ||| ||||||||| ||||||| |||||||||||| |||||||| |||| ||||    
T  7412892 ttttcggattatgtaatccggaaacatcatgtaacacgccctattttttgaagtttccggattacaaaatccggaaaaacccgttactc 7412804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 103 - 259
Target Start/End: Complemental strand, 23406879 - 23406721
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    |||||||||||| ||| | ||| |||||||||||||||  ||||||||  |||||||| ||||||||| ||||||| ||||||| |||||||||||||      
T  23406879 aaaaatggtgtttagggggtttccggattatgtaatccagaaacatcaactaacgcgccctattttttgaagtttccggattacgaaattcggaaaaact 23406780  T
Q  202 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 259  Q
    ||||||| |       || |||||||||||||||||| |||| | ||||| ||||||||    
T  23406779 cgtaactccatttttcaccctataacaaaggaaaacaccattccggattacgaaatccg 23406721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 103 - 202
Target Start/End: Original strand, 14587636 - 14587736
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    |||||||||||| ||| | |||  ||||||||||||| | |||||||||||||||||| ||||||||| ||||||  |||||||||||| ||||||||||    
T  14587636 aaaaatggtgtttagggggtttatggattatgtaatcaggaaacatcatgtaacgcgccctattttttaaagttttcggattacaaaatccggaaaaatc 14587735  T
Q  202 c 202  Q
    |    
T  14587736 c 14587736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 198
Target Start/End: Original strand, 3717359 - 3717455
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctct-attttttaagtttctggattacaaaattcggaaaa 198  Q
    |||||| ||||| ||| | ||| | |||||| ||||||| |||||||||||||||||| || |||||| ||||||| ||||||||||||||||||||    
T  3717359 aaaaattgtgtttaggaggtttccagattatataatccggaaacatcatgtaacgcgccctaatttttgaagtttccggattacaaaattcggaaaa 3717455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 17501015 - 17500967
Alignment:
Q  38 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatc 86  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17501015 ttacaaacatgttcagatttggtgctggtgttgtccggattacgtaatc 17500967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 4508386 - 4508485
Alignment:
Q  111 tgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctct-attttttaagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    |||| ||| ||||| |||||||| ||||||| |||||||||||||| ||| || |||||| || ||||||||||| ||||| ||||||||||||| ||||    
T  4508386 tgtttaggggatttccggattatataatccggaaacatcatgtaacacgccctaatttttgaaatttctggattataaaatccggaaaaatccgttactc 4508485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 2813300 - 2813409
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaa--attcggaaaaa 199  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||| | |  |||||||| ||||||| ||||||||||  || ||||||||    
T  2813300 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacacaccttattttttgaagtttccggattacaaaatatccggaaaaa 2813399  T
Q  200 tccgtaactc 209  Q
    || |||||||    
T  2813400 tctgtaactc 2813409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 9905180 - 9905100
Alignment:
Q  124 ttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccg 203  Q
    |||||||||||||||||| ||| |||| ||| ||||| ||||||||| || |||| | |||||||||| ||||||||||||    
T  9905180 ttcggattatgtaatccggaaaaatcacgtagcgcgccctattttttgaaatttccgaattacaaaatccggaaaaatccg 9905100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 5638919 - 5638879
Alignment:
Q  129 attatgtaatccgaaaacatcatgtaacgcgctctattttt 169  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  5638919 attatgtaatccggaaacatcatgtaacgcgccctattttt 5638879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 1945630 - 1945712
Alignment:
Q  128 gattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    |||||| ||||||| |||  | ||||||||| | ||| ||||| ||||||  |||||||||||| ||||||||||||||||||    
T  1945630 gattatataatccggaaaatttatgtaacgcaccctagtttttgaagttttcggattacaaaatccggaaaaatccgtaactc 1945712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 17501225 - 17501175
Alignment:
Q  38 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccg 88  Q
    ||||||||||||| ||| ||||| ||| || ||||||||||||||||||||    
T  17501225 ttacaaacatgttcagaattggtcctgatgctgtccggattacgtaatccg 17501175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 122 - 279
Target Start/End: Original strand, 3304853 - 3305013
Alignment:
Q  122 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt--aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnac 218  Q
    |||| ||||||||||||||| ||| |||||||||| | | |||||||||  |||||||||||||||||||| ||||||||||||||||| |       ||    
T  3304853 tttttggattatgtaatccggaaatatcatgtaacacaccctatttttttgaagtttctggattacaaaatccggaaaaatccgtaactccatttttcac 3304952  T
Q  219 tctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
     |||||||||||||||||| |||| || ||||||||||||| |||||||||||||||||||    
T  3304953 cctataacaaaggaaaacaccattccaaattatgaaatccggaaatctcaaagacattttt 3305013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 8154983 - 8154876
Alignment:
Q  102 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 200  Q
    |||||| |||||| ||| | |||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| |||||||||    
T  8154983 aaaaaagggtgtttagggggttttcggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaat 8154884  T
Q  201 ccgtaact 208  Q
    ||||||||    
T  8154883 ccgtaact 8154876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 43737207 - 43737100
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | ||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||||||||    
T  43737207 aaaaagggtgtttagggggtttccggattatgtaatccgaaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaatc 43737108  T
Q  202 cgtaactc 209  Q
    ||| ||||    
T  43737107 cgttactc 43737100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 102 - 279
Target Start/End: Complemental strand, 47202578 - 47202399
Alignment:
Q  102 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 200  Q
    |||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||  ||||||||||||  ||||||||    
T  47202578 aaaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagttttcggattacaaaatctggaaaaat 47202479  T
Q  201 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    |||||||| |       || |||||||||| ||||||| |||| | |||||||||||||| ||| ||||| | |||||||    
T  47202478 ccgtaactccatttttcaccctataacaaaagaaaacaccattccggattatgaaatccggaaacctcaagggcattttt 47202399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 103 - 259
Target Start/End: Original strand, 42925717 - 42925875
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | ||| |||||||||||||||||||||||||||||| |||| ||||||||| ||||||| ||||||||||||  ||||||| |    
T  42925717 aaaaaaggtgtttagggggtttccggattatgtaatccgaaaacatcatgtaatgcgccctattttttgaagtttccggattacaaaatcaggaaaaacc 42925816  T
Q  202 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 259  Q
    ||||||| |       || |||||||||||||||||| |||| | ||||||||||||||    
T  42925817 cgtaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatccg 42925875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 24042264 - 24042371
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    |||||||||||| ||| | ||| |||||||||||||||| ||||||||||||||||||  |||||||| ||||||| |||||||||||| |||||||| |    
T  24042264 aaaaatggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccttattttttgaagtttccggattacaaaatccggaaaaacc 24042363  T
Q  202 cgtaactc 209  Q
    ||||||||    
T  24042364 cgtaactc 24042371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 19225674 - 19225771
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaa 199  Q
    |||||||||||| ||| ||||| |||||||||||||||| |||||||||||||||| | ||||||||| |||||| ||||||||||||| ||||||||    
T  19225674 aaaaatggtgtttaggggatttccggattatgtaatccggaaacatcatgtaacgcaccctattttttgaagtttttggattacaaaatccggaaaaa 19225771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 103 - 263
Target Start/End: Original strand, 28230544 - 28230705
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||| ||||||||| ||||||||| ||||||| |||||||||||| ||||||||||    
T  28230544 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcaagtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaatc 28230643  T
Q  202 cgtaactcnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaa 263  Q
    ||| ||||       || || ||||||| ||||||| ||||   |||||| |||||||||||    
T  28230644 cgttactcattttttaccctttaacaaaagaaaacaccattctggattataaaatccgaaaa 28230705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 3936191 - 3936084
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | |||| ||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| |||||||| |    
T  3936191 aaaaagggtgtttagggggtttttggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacc 3936092  T
Q  202 cgtaactc 209  Q
    ||| ||||    
T  3936091 cgttactc 3936084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 103 - 204
Target Start/End: Original strand, 37518371 - 37518473
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    |||||||||||| ||| | ||| |||||||||||||||| |||| ||||||||| ||| ||||||||| |||||||||||||| ||||| ||||||||||    
T  37518371 aaaaatggtgtttagggggtttccggattatgtaatccggaaacttcatgtaacacgccctattttttgaagtttctggattataaaatccggaaaaatc 37518470  T
Q  202 cgt 204  Q
    |||    
T  37518471 cgt 37518473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 36408431 - 36408347
Alignment:
Q  126 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    |||||||||||||||| |||||||||||| |||||  |||||||| |||||||||||||||||||| ||||||||||||| ||||    
T  36408431 cggattatgtaatccggaaacatcatgtatcgcgccttattttttgaagtttctggattacaaaatccggaaaaatccgttactc 36408347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 165 - 281
Target Start/End: Complemental strand, 28346167 - 28346051
Alignment:
Q  165 ttttttaagtttctggattacaaaattcggaaaaatccgtaactcnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaat 264  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||        |||| |||||||||||||||||||| ||||||||||||| |  |||     
T  28346167 tttttgaagtttctggattacaaaattcggaaacatccgtaactcatttttttctctttaacaaaggaaaacatcattccagattatgaaattcagaaac 28346068  T
Q  265 ctcaaagacatttttag 281  Q
     |||||| |||||||||    
T  28346067 ttcaaaggcatttttag 28346051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 122 - 208
Target Start/End: Original strand, 33574129 - 33574216
Alignment:
Q  122 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact 208  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| |||||||||||| |  |||||||| |||||    
T  33574129 ttttcggattatgtaatccgaaaacatcatgtaacgcaccctattttttaaagtttccggattacaaaatccaaaaaaatccataact 33574216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 102 - 209
Target Start/End: Complemental strand, 36629289 - 36629181
Alignment:
Q  102 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaat 200  Q
    ||||||||||||| ||  | ||| | |||||||||||||| |||||||||||||||||| ||| ||||||||||| |  ||||||||||| |||||||||    
T  36629289 aaaaaatggtgtttagagggtttccagattatgtaatccggaaacatcatgtaacgcgccctatttttttaagttaccagattacaaaatccggaaaaat 36629190  T
Q  201 ccgtaactc 209  Q
    |||| ||||    
T  36629189 ccgttactc 36629181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 269
Target Start/End: Complemental strand, 31643101 - 31642956
Alignment:
Q  126 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctat 223  Q
    |||||||||||||||| |||||||||||||| | | ||||||||| |||||||   ||||||| || | ||||||||||||||| |       || ||||    
T  31643101 cggattatgtaatccggaaacatcatgtaacacaccctattttttgaagtttccaaattacaagatccagaaaaatccgtaactccatttttcaccctat 31643002  T
Q  224 aacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaa 269  Q
    |||||| ||||||| |||| |||||||||||||||| ||| |||||    
T  31643001 aacaaacgaaaacaccattccagattatgaaatccggaaacctcaa 31642956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 6467780 - 6467671
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaag-tttctgga--ttacaaaattcggaaaaa 199  Q
    ||||| |||||| ||| | | |||||||||||||||||||| | |||||||||| | | ||||||||| || ||||||||  ||||| ||||||||||||    
T  6467780 aaaaagggtgtttagggggtgttcggattatgtaatccgaacaaatcatgtaacacaccctattttttgagatttctggattttacataattcggaaaaa 6467681  T
Q  200 tccgtaactc 209  Q
    ||||||||||    
T  6467680 tccgtaactc 6467671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 36468613 - 36468719
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | ||| |||||||||||||| |||| ||||||||||| ||| ||||||||| |||||||   |||||||||| ||||||||||    
T  36468613 aaaaagggtgtttagggggtttccggattatgtaatctgaaa-catcatgtaacacgccctattttttgaagtttccatattacaaaatccggaaaaatc 36468711  T
Q  202 cgtaactc 209  Q
    ||| ||||    
T  36468712 cgttactc 36468719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 33151292 - 33151201
Alignment:
Q  102 aaaaaatg-gtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta--ttttttaagtttctggattacaaaat 190  Q
    |||||||| ||||| ||| ||||| |||||||||||||||||| ||||||| ||| |||| |||  ||||||||||||| | ||||||||||    
T  33151292 aaaaaatgagtgtttaggggatttccggattatgtaatccgaagacatcatataatgcgccctattttttttaagtttccgaattacaaaat 33151201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 279
Target Start/End: Original strand, 8214703 - 8214762
Alignment:
Q  220 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    |||||| ||||||||||| |  |||||||| | |||||||||||||||||||||||||||    
T  8214703 ctataataaaggaaaacaccggttcagattttaaaatccgaaaatctcaaagacattttt 8214762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 31985594 - 31985661
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt 170  Q
    |||||||||||| | | | | |||| ||||||||||||||||| |||||||||||||| |||||||||    
T  31985594 aaaaatggtgtttaaggggtgttcgaattatgtaatccgaaaaaatcatgtaacgcgccctatttttt 31985661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 5730987 - 5731036
Alignment:
Q  39 tacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccg 88  Q
    |||||||||||||||| ||| |||||||| ||||| ||||||||||||||    
T  5730987 tacaaacatgtttagaattgttgctggtggtgtcctgattacgtaatccg 5731036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 26555138 - 26555184
Alignment:
Q  124 ttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt 170  Q
    ||||||||| ||||||| |||| |||||||||||||| |||||||||    
T  26555138 ttcggattaggtaatccaaaaaaatcatgtaacgcgccctatttttt 26555184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 42877149 - 42877218
Alignment:
Q  131 tatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaa 199  Q
    ||||||||||| |||||| ||||||||||| ||| |||||| | ||||  ||||||||||| ||||||||    
T  42877149 tatgtaatccggaaacattatgtaacgcgccctattttttttattttcccgattacaaaatccggaaaaa 42877218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 5731199 - 5731247
Alignment:
Q  42 aaacatgtttagatttggtgctggtgttgtccggattacgtaatccgga 90  Q
    ||||||||| ||| |||||| ||||| ||||| ||||||||||||||||    
T  5731199 aaacatgttcagaattggtgttggtgctgtcccgattacgtaatccgga 5731247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 102 - 280
Target Start/End: Complemental strand, 47302103 - 47301923
Alignment:
Q  102 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaat 200  Q
    |||||| |||||| ||| | |||||||||||||||||||| ||||||||||||||||||  || ||||||||||||| |||||||||||| |||||||||    
T  47302103 aaaaaagggtgtttaggaggttttcggattatgtaatccggaaacatcatgtaacgcgccttatttttttaagtttccggattacaaaatccggaaaaat 47302004  T
Q  201 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttta 280  Q
    || ||||| |       || |||||||||||||||||| |||| |  |||||||||||||||||  |||| ||||||||||    
T  47302003 ccataactccatttttcaccctataacaaaggaaaacaccattccgaattatgaaatccgaaaacttcaaggacattttta 47301923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 34821419 - 34821514
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaa 197  Q
    |||||||||||| ||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  34821419 aaaaatggtgtttagggggtttccggattatgtaatccgaaaacatcatgtaacgcgctctattttttgaagtttccggattacaaaattcggaaa 34821514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 56 - 279
Target Start/End: Complemental strand, 48304127 - 48303896
Alignment:
Q  56 ttggtgctggtgttgtccggattacgtaatccggattgca------ccatagaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatc 149  Q
    |||||| ||||| |||| ||||||||||||||||||||||      ||||  ||||||||||||| ||| | |||||||||||||||||| ||||| |||    
T  48304127 ttggtgatggtgctgtctggattacgtaatccggattgcatcaccaccatgaaaaaaatggtgttgagggggttttcggattatgtaatctgaaaaaatc 48304028  T
Q  150 atgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactc-nnnnnnnactctataacaaaggaaaacatcatttcaga 247  Q
    ||||||| | | ||||||||| || |||| |||||||||||| ||||||||||||||||||        || || ||||||||||||||| |||| | ||    
T  48304027 atgtaacacaccctattttttgagatttccggattacaaaatccggaaaaatccgtaactcattttttcaccctttaacaaaggaaaacaccattccgga 48303928  T
Q  248 ttatgaaatccgaaaatctcaaagacattttt 279  Q
    |||||||||| | ||| ||||| | |||||||    
T  48303927 ttatgaaatctggaaacctcaagggcattttt 48303896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 103 - 279
Target Start/End: Complemental strand, 51258485 - 51258308
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    |||||||||||| ||| | | |||||||||||||||||||||| || ||||||||||| ||||||||| || ||| ||||||||||||| ||||||||||    
T  51258485 aaaaatggtgtttagggggtgttcggattatgtaatccgaaaaaattatgtaacgcgccctattttttgaaatttatggattacaaaatccggaaaaatc 51258386  T
Q  202 cgtaactcnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    ||||||||       || || |||||||||||||||  ||| | |||||||||||||  |||  |||| |||||||||    
T  51258385 cgtaactcatttttcaccctttaacaaaggaaaacacaattccggattatgaaatccagaaacttcaaggacattttt 51258308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 103 - 259
Target Start/End: Original strand, 3902882 - 3903040
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | ||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||  |||||||||||| |||||||| |    
T  3902882 aaaaagggtgtttagggggtttccggattatgtaatccaaaaacatcatgtaacgcgctctattttttgaagttttcggattacaaaatccggaaaaacc 3902981  T
Q  202 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 259  Q
     |||||| |       || |||||||||||||||||| |||| | ||||||||||||||    
T  3902982 agtaactccacttttcaccctataacaaaggaaaacaccattccggattatgaaatccg 3903040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 103 - 204
Target Start/End: Complemental strand, 39149892 - 39149791
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaattcggaaaaatcc 202  Q
    |||||||||||| ||| | ||| |||||||||||||||| |||||  ||||||||||| ||||||||| ||||||||||||||||||| |||||||||||    
T  39149892 aaaaatggtgtttagggggtttccggattatgtaatccggaaacactatgtaacgcgccctattttttgagtttctggattacaaaatccggaaaaatcc 39149793  T
Q  203 gt 204  Q
    ||    
T  39149792 gt 39149791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 102 - 204
Target Start/End: Complemental strand, 35142158 - 35142055
Alignment:
Q  102 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctct-attttttaagtttctggattacaaaattcggaaaaat 200  Q
    ||||||||||||| ||| | ||| |||||||||||||||| |||||||||||||||||| || |||||| ||||||| |||||||||||  |||||||||    
T  35142158 aaaaaatggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctaatttttgaagtttccggattacaaaacccggaaaaat 35142059  T
Q  201 ccgt 204  Q
    ||||    
T  35142058 ccgt 35142055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 38 - 209
Target Start/End: Complemental strand, 45244539 - 45244365
Alignment:
Q  38 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca------ccatagaaaaaatggtgttcaggcgattttcggatt 131  Q
    ||||||||||||| ||| |||||||| ||| ||||||||||||||||||| |||||||      ||||  |||||| ||||||  |    ||||| ||||    
T  45244539 ttacaaacatgttcagaattggtgctcgtgctgtccggattacgtaatccagattgcatcagcaccatgaaaaaaagggtgtttgg----ttttcagatt 45244444  T
Q  132 atgtaatccgaaaacatcatgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactc 209  Q
    |||||||||||||| |||||||||||||| ||||||||| || |||  | |||||||||| ||||||||||| ||||||    
T  45244443 atgtaatccgaaaaaatcatgtaacgcgccctattttttgagattttcgaattacaaaatccggaaaaatccataactc 45244365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 3937452 - 3937364
Alignment:
Q  122 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    |||||| ||||||||||||  |||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||  ||||||||    
T  3937452 ttttcgaattatgtaatccagaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaattcggaaaaactcgtaactc 3937364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 47740008 - 47740107
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||  |||||||||    
T  47740008 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatctggaaaaatc 47740107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 103 - 204
Target Start/End: Original strand, 38977824 - 38977926
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | ||||||||||||||||||| |||||| |||||||||||| ||||||||| ||||||| ||||||||||||   ||||||||    
T  38977824 aaaaaaggtgtttagggggttttcggattatgtaatcccaaaacaccatgtaacgcgccctattttttgaagtttccggattacaaaatctagaaaaatc 38977923  T
Q  202 cgt 204  Q
    |||    
T  38977924 cgt 38977926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 126 - 259
Target Start/End: Original strand, 2358721 - 2358857
Alignment:
Q  126 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt--aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactcta 222  Q
    |||||||||||| ||| |||||||||||||| ||| |||||||||  ||||||| |||||||||||| | | ||||||||||||| |       || |||    
T  2358721 cggattatgtaagccggaaacatcatgtaacacgccctatttttttgaagtttccggattacaaaatccaggaaaatccgtaactccatttttcacccta 2358820  T
Q  223 taacaaaggaaaacatcatttcagattatgaaatccg 259  Q
    ||||||||||||||| |||| | ||||||||||||||    
T  2358821 taacaaaggaaaacaccattccggattatgaaatccg 2358857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 501240 - 501314
Alignment:
Q  126 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaa 199  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||| |||||| ||||||||||||| ||||||||    
T  501240 cggattatgcaatccggaaacatcatgtaacgcgccctattttttgaagtttttggattacaaaatccggaaaaa 501314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 102 - 278
Target Start/End: Complemental strand, 28873087 - 28872910
Alignment:
Q  102 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 200  Q
    |||||| |||||| ||| | || | ||||||||||||||| |||||| ||||||||||  ||||||||| || |||  |||||| ||||| | ||||||     
T  28873087 aaaaaagggtgtttagggggttgttggattatgtaatccggaaacataatgtaacgcgtcctattttttgaaattttcggattataaaatccagaaaaac 28872988  T
Q  201 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacatttt 278  Q
     ||||||| |       || ||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||    
T  28872987 tcgtaacttcatttttcaccctataacaaagaaaaacatcattccagattatgaaatccgaaaa-ctcaaggacatttt 28872910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 33438578 - 33438503
Alignment:
Q  129 attatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgt 204  Q
    ||||||||||||| || ||||||||||||||| ||||||||| |||||| ||||||||||||||| |||||||||||    
T  33438578 attatgtaatccggaa-catcatgtaacgcgccctattttttgaagtttttggattacaaaattcagaaaaatccgt 33438503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 279
Target Start/End: Original strand, 49096327 - 49096480
Alignment:
Q  127 ggattatgtaatccgaaaacatcatgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactcnnnnnnnactctataa 225  Q
    |||||||||||| |||||| ||||||||||  ||  |||||||| || |||| |||||||||||| |||||||||||||||||        || || |||    
T  49096327 ggattatgtaattcgaaaaaatcatgtaacatgccatattttttgagatttccggattacaaaatccggaaaaatccgtaacttatttttcaccctttaa 49096426  T
Q  226 caaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
     |||| ||||||||||| ||||||||||||| || |||  |||| |||||||||    
T  49096427 taaagaaaaacatcattccagattatgaaattcggaaacttcaaggacattttt 49096480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 51540713 - 51540797
Alignment:
Q  126 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    ||||||||||||| || |||||||||||||||||| ||||||||| ||||||| ||||| |||||| | ||||||||||| ||||    
T  51540713 cggattatgtaattcggaaacatcatgtaacgcgccctattttttgaagtttccggattccaaaatccagaaaaatccgttactc 51540797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 50716335 - 50716228
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | ||| |||||||||||||| | |||||||||||||| ||| ||||||||| ||||||  |||||||||||| || ||||| |    
T  50716335 aaaaagggtgtttagggggtttccggattatgtaatctggaaacatcatgtaacacgccctattttttgaagttttcggattacaaaatccgaaaaaacc 50716236  T
Q  202 cgtaactc 209  Q
    ||||||||    
T  50716235 cgtaactc 50716228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 50796512 - 50796619
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | ||| |||||||||||||| | |||||||||||||| ||| ||||||||| ||||||  |||||||||||| || ||||| |    
T  50796512 aaaaagggtgtttagggggtttccggattatgtaatctggaaacatcatgtaacacgccctattttttgaagttttcggattacaaaatccgaaaaaacc 50796611  T
Q  202 cgtaactc 209  Q
    ||||||||    
T  50796612 cgtaactc 50796619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 3352168 - 3352249
Alignment:
Q  129 attatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    ||||||||||||| |||||||||||||||| | ||| |||||||||||||  |||||||||||| |||||||| ||| ||||    
T  3352168 attatgtaatccggaaacatcatgtaacgcaccctatttttttaagtttcctgattacaaaatttggaaaaattcgttactc 3352249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 263
Target Start/End: Original strand, 30721881 - 30722048
Alignment:
Q  103 aaaaatggtgttcaggcgatt-ttcggattatgtaatccgaaaacatcatgtaac---gcgctctatttttt-aagtttctggattacaaaattcggaaa 197  Q
    |||||||||||| ||| || | |||||||||||||||||||||| |||||||||    |||| ||||||||| ||||||  ||||||||||||    |||    
T  30721881 aaaaatggtgtttaggggagtgttcggattatgtaatccgaaaaaatcatgtaatattgcgccctattttttgaagttttcggattacaaaatctaaaaa 30721980  T
Q  198 aatccgtaactcnnnnnnn--actctataacaaaggaaaacatcatttcagattatgaaatccgaaaa 263  Q
     |||| ||||||         ||||||||||||||||||||| || ||||||||||||||||||||||    
T  30721981 catccataactcatttttttcactctataacaaaggaaaacaccagttcagattatgaaatccgaaaa 30722048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 170
Target Start/End: Complemental strand, 32025139 - 32024999
Alignment:
Q  36 tattacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgc------accatagaaaaaatggtgttcaggcgattttcgga 129  Q
    ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||| | |||      |||||  ||||||||||||| ||| | | ||| ||    
T  32025139 tattacaaacatgttcagaattggtgctggtgttgtccgaattacgtaatccgaactgcatcaggaccatgaaaaaaatggtgtttagggggtgttcaga 32025040  T
Q  130 ttatgtaatccgaaaacatcatgtaacgcgctctatttttt 170  Q
    || | ||||||||||| ||||| ||  |||| |||||||||    
T  32025039 ttctataatccgaaaaaatcatatagtgcgccctatttttt 32024999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 52777287 - 52777226
Alignment:
Q  129 attatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaat 190  Q
    ||||||||||||| ||||||||||||| | ||||||||||| ||||||| ||||||||||||    
T  52777287 attatgtaatccggaaacatcatgtaaagtgctctatttttgaagtttccggattacaaaat 52777226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 52777205 - 52777146
Alignment:
Q  220 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    |||||||||||||||||| |||| |||||||||||||||||||| ||||| | |||||||    
T  52777205 ctataacaaaggaaaacaccattccagattatgaaatccgaaaacctcaagggcattttt 52777146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 46 - 209
Target Start/End: Original strand, 44085434 - 44085605
Alignment:
Q  46 atgtttagatttggtgctggtgttgtccggattacgtaatccggatt------gcaccat-agaaaaaatggtgttcaggcgattttcggattatgtaat 138  Q
    ||||||||| |||||||| |||||||| ||||||||||||| |||||      ||||||| | ||||||||||||| ||| | | |||||||||||||||    
T  44085434 atgtttagaattggtgcttgtgttgtctggattacgtaatctggattgcatcagcaccatgaaaaaaaatggtgtttagg-gctgttcggattatgtaat 44085532  T
Q  139 ccgaaaacatcatgtaacgcgctctatttttt--aagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    | ||| | || ||||||| | | |||||||||  |  ||| | ||||||| ||||||||||||||||| ||||    
T  44085533 ctgaagaaattatgtaacacaccctatttttttgagatttttagattacataattcggaaaaatccgtcactc 44085605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 45244744 - 45244691
Alignment:
Q  42 aaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca 95  Q
    ||||||||| ||| |||||| |||| ||||||||||||||||||||||||||||    
T  45244744 aaacatgttcagaattggtgatggtattgtccggattacgtaatccggattgca 45244691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 46622860 - 46622968
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctgg-attacaaaattcggaaaaat 200  Q
    |||||||||||| ||| | ||| | |||||||||||||| ||||||||||||||| |  ||||||||| ||||||| ||  ||| ||||| |||||||||    
T  46622860 aaaaatggtgtttagggggtttccagattatgtaatccggaaacatcatgtaacgtgtcctattttttgaagtttccggttttataaaatccggaaaaat 46622959  T
Q  201 ccgtaactc 209  Q
    |||| ||||    
T  46622960 ccgttactc 46622968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 209
Target Start/End: Original strand, 34821512 - 34821579
Alignment:
Q  143 aaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    |||||||| ||||||||| ||||||||| ||||||| |||||||||||| ||||||| ||||| ||||    
T  34821512 aaacatcaggtaacgcgccctattttttgaagtttccggattacaaaatccggaaaattccgttactc 34821579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 278
Target Start/End: Complemental strand, 32024936 - 32024878
Alignment:
Q  220 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacatttt 278  Q
    |||||| |||||||||||||| |||  ||| | ||||||||||||||||||||||||||    
T  32024936 ctataataaaggaaaacatcagttcgaattttaaaatccgaaaatctcaaagacatttt 32024878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 43473044 - 43473097
Alignment:
Q  102 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaa 155  Q
    ||||||||||||| ||| | ||| |||||||||||||||| |||||||||||||    
T  43473044 aaaaaatggtgtttagggggtttccggattatgtaatccggaaacatcatgtaa 43473097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 8735331 - 8735278
Alignment:
Q  42 aaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca 95  Q
    ||||||||| ||| |||||||||||| |||||| ||| ||||||| ||||||||    
T  8735331 aaacatgttcagaattggtgctggtgctgtccgaatttcgtaatctggattgca 8735278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 8735542 - 8735493
Alignment:
Q  38 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatcc 87  Q
    ||||||||||||| | | |||||| || ||||||||||||||||||||||    
T  8735542 ttacaaacatgttcataattggtgttgatgttgtccggattacgtaatcc 8735493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 9087572 - 9087519
Alignment:
Q  42 aaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca 95  Q
    ||||||||| ||| |||||||||||| |||||| ||| ||||||| ||||||||    
T  9087572 aaacatgttcagaattggtgctggtgctgtccgaatttcgtaatctggattgca 9087519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 9087783 - 9087734
Alignment:
Q  38 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatcc 87  Q
    ||||||||||||| | | |||||| || ||||||||||||||||||||||    
T  9087783 ttacaaacatgttcataattggtgttgatgttgtccggattacgtaatcc 9087734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 47123135 - 47123082
Alignment:
Q  157 gcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||| |||| ||||    
T  47123135 gcgccctattttttgaagtttccggattacaaaattcggaaaaacccgttactc 47123082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 47130501 - 47130448
Alignment:
Q  157 gcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||| |||| ||||    
T  47130501 gcgccctattttttgaagtttccggattacaaaattcggaaaaacccgttactc 47130448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 102 - 209
Target Start/End: Original strand, 31519967 - 31520075
Alignment:
Q  102 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 200  Q
    |||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||     
T  31519967 aaaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgctctattttttgaagtttctggattacaaaatccggaaaaag 31520066  T
Q  201 ccgtaactc 209  Q
    |||||||||    
T  31520067 ccgtaactc 31520075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 38 - 209
Target Start/End: Original strand, 7971002 - 7971180
Alignment:
Q  38 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca------ccatagaaaaaatggtgttcaggcgattttcggatt 131  Q
    ||||||||||||| ||| ||| |||||||| |||||||||||||||||||||||||||      |||| ||||||| |||||| | | | | || |||||    
T  7971002 ttacaaacatgttcagaattgatgctggtgctgtccggattacgtaatccggattgcatcagcaccatggaaaaaagggtgtttatggggtgtttggatt 7971101  T
Q  132 atgtaatcc-gaaaacatcatgtaacgcgctctattttttaagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    ||||||||| |||||||||| ||| ||||  |||||||| |||||||  ||||||||||| ||||||||||||||||||    
T  7971102 atgtaatccagaaaacatcacgtagcgcgtcctatttttgaagtttccagattacaaaatccggaaaaatccgtaactc 7971180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 38 - 258
Target Start/End: Complemental strand, 41530824 - 41530595
Alignment:
Q  38 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca------ccatagaaaaaatggtgttcaggcgattttcggatt 131  Q
    ||||||||||||| | | |||||| ||||| |||||||||||||||||||||||||||      ||||  |||||| ||| || ||| | | ||| ||||    
T  41530824 ttacaaacatgttcaaaattggtgatggtgatgtccggattacgtaatccggattgcaacagcaccatgaaaaaaagggtttttagggggtgttcagatt 41530725  T
Q  132 atgtaatccgaaaaca-tcatgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactc-nnnnnnnactctataacaa 228  Q
    |||||||| ||||| | ||||||||||||| ||||||||| || |||| |||||||||||||||||||||||||||||||        || || ||||||    
T  41530724 atgtaatctgaaaaaaatcatgtaacgcgccctattttttgagatttccggattacaaaattcggaaaaatccgtaactcatttttccaccctttaacaa 41530625  T
Q  229 aggaaaacatcatttcagattatgaaatcc 258  Q
    |||||||||||||| | |||||| ||||||    
T  41530624 aggaaaacatcattccggattataaaatcc 41530595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 102 - 279
Target Start/End: Complemental strand, 21004473 - 21004295
Alignment:
Q  102 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaa-gtttctggattacaaaattcggaaaaat 200  Q
    ||||||||||||| |||   |||||||||||||||||||| |||||| |||||||||||  |||||||||| ||||| |||||||||||| |||||||||    
T  21004473 aaaaaatggtgtttagggagttttcggattatgtaatccggaaacat-atgtaacgcgccttattttttaaagtttccggattacaaaatccggaaaaat 21004375  T
Q  201 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    |||||||| |       || |||||||||||||||||| |||| | |||||||||||| | ||| ||||| | |||||||    
T  21004374 ccgtaactccatttttcaccctataacaaaggaaaacaccattccggattatgaaatctggaaacctcaagggcattttt 21004295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 3094764 - 3094657
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    |||||||||||| ||| | ||| |||||||||||||||| ||||||||||||| |||| ||||||||| ||||||| |||||||||||| |||||||| |    
T  3094764 aaaaatggtgtttagggggtttccggattatgtaatccggaaacatcatgtaatgcgccctattttttgaagtttccggattacaaaatccggaaaaacc 3094665  T
Q  202 cgtaactc 209  Q
    ||||||||    
T  3094664 cgtaactc 3094657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 27928017 - 27928124
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    |||||||||||| ||| | ||| | |||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| ||||||||||    
T  27928017 aaaaatggtgtttagggggtttcctgattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaatc 27928116  T
Q  202 cgtaactc 209  Q
    ||| ||||    
T  27928117 cgttactc 27928124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 44106306 - 44106199
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||  |||||||||    
T  44106306 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatctggaaaaatc 44106207  T
Q  202 cgtaactc 209  Q
    ||| ||||    
T  44106206 cgttactc 44106199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 109 - 209
Target Start/End: Original strand, 8885535 - 8885636
Alignment:
Q  109 ggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaac 207  Q
    |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| |||||||| |||| ||    
T  8885535 ggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgttac 8885634  T
Q  208 tc 209  Q
    ||    
T  8885635 tc 8885636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 37248641 - 37248534
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaatc 201  Q
    |||||||||||| ||| | |||  ||||||||||||||| ||||||||| |||||||| ||| ||||||||||||  |||||||||||| | |||||| |    
T  37248641 aaaaatggtgtttagggggtttctggattatgtaatccggaaacatcatctaacgcgccctatttttttaagttttcggattacaaaatccagaaaaacc 37248542  T
Q  202 cgtaactc 209  Q
    ||||||||    
T  37248541 cgtaactc 37248534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 38 - 95
Target Start/End: Complemental strand, 24627723 - 24627666
Alignment:
Q  38 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca 95  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||    
T  24627723 ttacaaacatattcagaattggtgctggtgttgtccggattacgtaatccggattgca 24627666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 34853382 - 34853309
Alignment:
Q  133 tgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgta 205  Q
    ||||||||| |||||||||||||||||| ||||||||| ||||||  |||||||||||| |||||||| |||||    
T  34853382 tgtaatccggaaacatcatgtaacgcgccctattttttaaagttttcggattacaaaatccggaaaaacccgta 34853309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 209
Target Start/End: Original strand, 36404222 - 36404337
Alignment:
Q  93 gcaccatagaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttttaagtttct-ggattacaaaatt 191  Q
    |||||||  |||||| |||||| ||| | |||||||||||| ||||||||||| |||||||||| ||| ||||||||| || || | ||||||||||||     
T  36404222 gcaccatgaaaaaaagggtgtttaggag-ttttcggattatataatccgaaaa-atcatgtaacacgccctattttttgagattttcggattacaaaatc 36404319  T
Q  192 cggaaaaatccgtaactc 209  Q
    ||||| ||||||||||||    
T  36404320 cggaataatccgtaactc 36404337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 109 - 204
Target Start/End: Complemental strand, 28916860 - 28916764
Alignment:
Q  109 ggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgt 204  Q
    |||||| ||| | ||| ||| |||||||||||  ||||||||| |||||||| ||||||||| ||||||| |||||||||||| |||||||| ||||    
T  28916860 ggtgtttagggggtttccggtttatgtaatccagaaacatcatttaacgcgccctattttttgaagtttccggattacaaaatccggaaaaacccgt 28916764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 35676635 - 35676715
Alignment:
Q  124 ttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccg 203  Q
    |||||||||||||||||| ||| ||||| || ||||| |||||||||  |||||| |||||||||||| ||||||||||||    
T  35676635 ttcggattatgtaatccggaaaaatcatatagcgcgccctattttttgtagtttccggattacaaaatccggaaaaatccg 35676715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 42280967 - 42281077
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatc---atgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaa 198  Q
    ||||| |||||| ||| | ||| |||||||||||||| | |||||||   ||||||||||||||||||||| ||||||  ||||||| |||| |||||||    
T  42280967 aaaaagggtgtttagggggtttccggattatgtaatctggaaacatcatgatgtaacgcgctctattttttgaagttttcggattacgaaatccggaaaa 42281066  T
Q  199 atccgtaactc 209  Q
    |||||| ||||    
T  42281067 atccgttactc 42281077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 40994869 - 40994808
Alignment:
Q  109 ggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt 170  Q
    |||||| ||| | ||||| |||||||||||||| |||||||||||||||||| |||||||||    
T  40994869 ggtgtttagggggttttcagattatgtaatccggaaacatcatgtaacgcgccctatttttt 40994808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 170
Target Start/End: Original strand, 31234739 - 31234876
Alignment:
Q  38 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgcacca-ta----gaaaaaatggtgttcaggcgattttcggatta 132  Q
    |||| |||||||| ||| |||||||| ||| |||||||||||||||||||| | |||| || ||    |||||||||||||| ||| | | ||||||||     
T  31234739 ttacgaacatgttcagaattggtgctagtgctgtccggattacgtaatccgaactgcatcagtaccatgaaaaaatggtgtttaggggttgttcggattc 31234838  T
Q  133 tgtaatccgaaaacatcatgtaacgcgctctatttttt 170  Q
    | ||||||||||| || || || ||||| |||||||||    
T  31234839 tataatccgaaaaaattatatagcgcgccctatttttt 31234876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 16310658 - 16310575
Alignment:
Q  127 ggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    ||||| ||||||||| ||| ||||| |||||| | ||||||||| ||||||| |||||||||||| |||||||| | |||||||    
T  16310658 ggattgtgtaatccggaaaaatcatctaacgcaccctattttttgaagtttccggattacaaaatccggaaaaacctgtaactc 16310575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 31234528 - 31234578
Alignment:
Q  38 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccg 88  Q
    ||||||| ||||| ||| |||||||||||||||| ||||||||||||||||    
T  31234528 ttacaaatatgttcagaattggtgctggtgttgttcggattacgtaatccg 31234578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 126 - 190
Target Start/End: Original strand, 11698385 - 11698450
Alignment:
Q  126 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaat 190  Q
    |||||||||||||||| |||||||||||||| ||   |||||||| ||||||| ||||||||||||    
T  11698385 cggattatgtaatccggaaacatcatgtaacacgtcttattttttgaagtttccggattacaaaat 11698450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 262
Target Start/End: Complemental strand, 41328531 - 41328502
Alignment:
Q  233 aaacatcatttcagattatgaaatccgaaa 262  Q
    ||||||||||||||||||||||||||||||    
T  41328531 aaacatcatttcagattatgaaatccgaaa 41328502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 9573 - 9680
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||||||| | |||||||||||||||||||| |||||||||||||||||  ||||||||| ||||||| ||||||||||||||||||||| |    
T  9573 aaaaagggtgttcagggggttttcggattatgtaatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaattcggaaaaacc 9672  T
Q  202 cgtaactc 209  Q
    ||||||||    
T  9673 cgtaactc 9680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 102 - 279
Target Start/End: Complemental strand, 23523998 - 23523819
Alignment:
Q  102 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 200  Q
    |||||| |||||| ||| | |||  ||||||||||||||| |||||||||||||||||  ||||||||| ||||||| |||||||||||| || ||||||    
T  23523998 aaaaaagggtgtttagggggtttctggattatgtaatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaatccgaaaaaat 23523899  T
Q  201 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    |||||||| |       || || |||||||||||||||||||| |  |||||||||||| |||||||||| | |||||||    
T  23523898 ccgtaactccatttttcaccctctaacaaaggaaaacatcattccgaattatgaaatcctaaaatctcaagggcattttt 23523819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 102 - 259
Target Start/End: Complemental strand, 49397100 - 49396941
Alignment:
Q  102 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaat 200  Q
    |||||||| |||| | | ||||||||||||||||||||| |||||||| ||||||||   ||||||||| ||||||| |||||||||||| |||||||||    
T  49397100 aaaaaatgatgtttaagggattttcggattatgtaatccaaaaacatcttgtaacgcatcctattttttgaagtttccggattacaaaatccggaaaaat 49397001  T
Q  201 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 259  Q
    |||||||| |       || |||||| |||||||||||||||| | ||||||||||||||    
T  49397000 ccgtaactccatttttcaccctataataaaggaaaacatcattccggattatgaaatccg 49396941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 29822687 - 29822603
Alignment:
Q  126 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaactc 209  Q
    |||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| |||||||| |||||||||    
T  29822687 cggattatgtaatccgaaaacatcatgtaacgcgctgtattttttgaagtttccggattacaaaatccggaaaaacccgtaactc 29822603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 126 - 269
Target Start/End: Complemental strand, 32441879 - 32441734
Alignment:
Q  126 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctat 223  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||||||| | ||||||||| ||||| |       || ||||    
T  32441879 cggattatgtaatccggaaacatcatgtaacgcgcgctattttttgaagtttccggattacaaaatccagaaaaatccttaactccatttttcaccctat 32441780  T
Q  224 aacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaa 269  Q
    |||||||||||||| |||| | |||||||||||||| ||| |||||    
T  32441779 aacaaaggaaaacaccattccggattatgaaatccggaaacctcaa 32441734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 103 - 264
Target Start/End: Complemental strand, 38536261 - 38536098
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | ||| |||||||||||||| | |||||||||||||| ||| ||||||||| ||||||| | |||||||||| |||||||| |    
T  38536261 aaaaaaggtgtttagggggtttccggattatgtaatctggaaacatcatgtaacacgccctattttttgaagtttccgaattacaaaatccggaaaaacc 38536162  T
Q  202 cgtaac-tcnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaat 264  Q
    |||||| ||       || |||||||||||||||||| |||||| |||||||||||||| ||||    
T  38536161 cgtaacttcatttttcaccctataacaaaggaaaacaccatttcggattatgaaatccggaaat 38536098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 124 - 278
Target Start/End: Complemental strand, 38416635 - 38416479
Alignment:
Q  124 ttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaatccgtaactc-nnnnnnnactct 221  Q
    |||||||||||||||||||||| ||||||||||| || ||| ||||||| ||||| ||||||||||||| | ||||||||| |||||        || ||    
T  38416635 ttcggattatgtaatccgaaaaaatcatgtaacgtgccctatttttttatgtttccggattacaaaatttgaaaaaatccgcaactcattttttcaccct 38416536  T
Q  222 ataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacatttt 278  Q
    |||||||||||||||| |  ||||||||||||||| ||||||  |||| ||||||||    
T  38416535 ataacaaaggaaaacacctattcagattatgaaattcgaaaacttcaaggacatttt 38416479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 135 - 279
Target Start/End: Original strand, 6228919 - 6229065
Alignment:
Q  135 taatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaact-cnnnnnnnactctataacaaagga 232  Q
    ||||||| |||||||||||||||||| ||||||||| ||||||| || ||||||||| |||||||||||||| || |       || |||||||||||||    
T  6228919 taatccggaaacatcatgtaacgcgccctattttttgaagtttccgggttacaaaatccggaaaaatccgtagctccatttttcaccctataacaaagga 6229018  T
Q  233 aaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    ||||| |||| | |||||||||||||  ||| ||||| |||||||||    
T  6229019 aaacaccattccggattatgaaatcctgaaacctcaaggacattttt 6229065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 17933238 - 17933315
Alignment:
Q  128 gattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgt 204  Q
    |||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||  ||||||||||||    
T  17933238 gattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttctggattacaaaatctggaaaaatccgt 17933315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 34972956 - 34972867
Alignment:
Q  102 aaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaat 190  Q
    ||||||||||||| ||| | ||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||  |||||||||||    
T  34972956 aaaaaatggtgtttagggggttttcggattatgtagtccgaaaacatcatgtaacgcgccctatttttttaagtttccagattacaaaat 34972867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 101 - 209
Target Start/End: Original strand, 48319139 - 48319247
Alignment:
Q  101 gaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaa 199  Q
    ||||||| |||||| ||| | |||||||||||||||||||  |||||||||||||||||| ||||||||| ||||||| ||||||| |||| ||||||||    
T  48319139 gaaaaaaaggtgtttagggggttttcggattatgtaatccagaaacatcatgtaacgcgccctattttttgaagtttccggattac-aaatccggaaaaa 48319237  T
Q  200 tccgtaactc 209  Q
    ||||| ||||    
T  48319238 tccgtcactc 48319247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 104 - 279
Target Start/End: Original strand, 6003748 - 6003927
Alignment:
Q  104 aaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta---ttttttaagtttctggattacaaaattcggaaaaat 200  Q
    |||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||| ||||    ||||||||||||| |||||| |||||||| ||||||    
T  6003748 aaaaaggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcactcttattttttttaagtttccggattataaaattcgaaaaaat 6003847  T
Q  201 ccgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    |||||||| |       || ||||||||||||||| || |||| | |||||||||||||  ||| ||||| || ||||||    
T  6003848 ccgtaactccatttttcaccctataacaaaggaaaccaccattccggattatgaaatccagaaacctcaaggatattttt 6003927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 103 - 204
Target Start/End: Original strand, 46440350 - 46440452
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||  ||| ||||||||||||| |||||| |||||||||||||| |    
T  46440350 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgtcctatttttttaagtttccggattataaaattcggaaaaacc 46440449  T
Q  202 cgt 204  Q
    |||    
T  46440450 cgt 46440452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 103 - 259
Target Start/End: Original strand, 3703326 - 3703484
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    |||||||||||| ||| | | |||| ||||||||||||||||| |||||||||| ||  ||||||||| ||||||  |||||||||||| || |||||||    
T  3703326 aaaaatggtgtttagggggtgttcgaattatgtaatccgaaaaaatcatgtaacacgtcctattttttgaagttttcggattacaaaatccgaaaaaatc 3703425  T
Q  202 cgtaactc-nnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 259  Q
    ||||||||        || ||||||||||||||||||  | ||| ||||||||||||||    
T  3703426 cgtaactcattttttcaccctataacaaaggaaaacactagttcggattatgaaatccg 3703484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 103 - 259
Target Start/End: Original strand, 25539024 - 25539182
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    |||||| ||||| ||| | ||| |||||||||||||||  ||||||||||||||  || ||||||||| ||||||| |||||||||||| |||||||| |    
T  25539024 aaaaatagtgtttagggggtttccggattatgtaatccagaaacatcatgtaacatgccctattttttgaagtttccggattacaaaatccggaaaaacc 25539123  T
Q  202 cgtaact-cnnnnnnnactctataacaaaggaaaacatcatttcagattatgaaatccg 259  Q
    ||||||| |       ||  ||||||||||||||||| |||| | ||||||||||||||    
T  25539124 cgtaactccatttttcaccatataacaaaggaaaacaccattccggattatgaaatccg 25539182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 19835611 - 19835504
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctattttt-taagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||| | ||||||||  ||||||| |||||||||||| |||||||| |    
T  19835611 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcaccctatttttcaaagtttccggattacaaaatccggaaaaacc 19835512  T
Q  202 cgtaactc 209  Q
    ||| ||||    
T  19835511 cgttactc 19835504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 109 - 209
Target Start/End: Complemental strand, 7931743 - 7931642
Alignment:
Q  109 ggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgtaac 207  Q
    |||||| ||| | ||| |||||||||||||||| |||||| ||||||||||| ||||||||| ||||||| ||||| |||||| |||||||| |||| ||    
T  7931743 ggtgtttagggggtttccggattatgtaatccggaaacataatgtaacgcgccctattttttgaagtttccggattgcaaaatccggaaaaacccgttac 7931644  T
Q  208 tc 209  Q
    ||    
T  7931643 tc 7931642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 25491471 - 25491568
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaa 199  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||  ||||||||| ||||||| |||||||||||| || |||||    
T  25491471 aaaaaaggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgtcctattttttgaagtttccggattacaaaatccgaaaaaa 25491568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 122 - 202
Target Start/End: Original strand, 25752539 - 25752620
Alignment:
Q  122 ttttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatcc 202  Q
    |||||||||||||||||| | ||||||||||||| |||| ||||||||| || |||| |||||||||||| |||||||||||    
T  25752539 ttttcggattatgtaatctggaaacatcatgtaatgcgccctattttttgaaatttccggattacaaaatccggaaaaatcc 25752620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 209
Target Start/End: Original strand, 54631537 - 54631646
Alignment:
Q  101 gaaaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctcta-ttttttaagtttctggattacaaaattcggaaaaa 199  Q
    |||||||  ||||| ||| | ||| |||||||||||||||| ||||||||||||||||||  || ||||| ||||||| |||||||||||| ||||||||    
T  54631537 gaaaaaaatgtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccatactttttgaagtttccggattacaaaatccggaaaaa 54631636  T
Q  200 tccgtaactc 209  Q
     |||| ||||    
T  54631637 cccgttactc 54631646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 103 - 209
Target Start/End: Original strand, 2506107 - 2506215
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctc-tatttttt-aagtttctggattacaaaattcggaaaaat 200  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| | |||||||| | ||||||| || |||||||| ||||||||    
T  2506107 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgcccttattttttgatgtttctgaatcacaaaatttggaaaaat 2506206  T
Q  201 ccgtaactc 209  Q
    |||| ||||    
T  2506207 ccgttactc 2506215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 40703755 - 40703648
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | ||||| | |||||||||||| ||||||||||||| || | ||||||||| || |||| |||||||||||| ||||||||||    
T  40703755 aaaaagggtgtttagggggttttcaggttatgtaatccggaaacatcatgtaatgcaccctattttttgaaatttccggattacaaaatccggaaaaatc 40703656  T
Q  202 cgtaactc 209  Q
    ||| ||||    
T  40703655 cgttactc 40703648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 8106483 - 8106387
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaa 198  Q
    |||||||||||| ||| | | ||||||||||||||| || ||| |||||||| ||||| ||||||||| ||||||  |||||||||||| |||||||    
T  8106483 aaaaatggtgtttagggggtgttcggattatgtaatacggaaaaatcatgtagcgcgccctattttttgaagttttcggattacaaaatccggaaaa 8106387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 279
Target Start/End: Original strand, 41413270 - 41413329
Alignment:
Q  220 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    ||||||||||| ||||||  ||| | |||||||||||||||||||||||| |||||||||    
T  41413270 ctataacaaagaaaaacactattccggattatgaaatccgaaaatctcaaggacattttt 41413329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 50392529 - 50392592
Alignment:
Q  147 atcatgtaacgcgctctattttttaag-tttctggattacaaaattcggaaaaatccgtaactc 209  Q
    |||||||||||||| | ||||||| || |||| |||||||||||| ||||||||||||||||||    
T  50392529 atcatgtaacgcgccccattttttgagatttccggattacaaaatccggaaaaatccgtaactc 50392592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 279
Target Start/End: Complemental strand, 34972846 - 34972787
Alignment:
Q  220 ctataacaaaggaaaacatcatttcagattatgaaatccgaaaatctcaaagacattttt 279  Q
    |||||||||||||||||| |||| | |||||||||||||| ||| ||||| | |||||||    
T  34972846 ctataacaaaggaaaacaccattccggattatgaaatccggaaacctcaagggcattttt 34972787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 25140725 - 25140775
Alignment:
Q  38 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccg 88  Q
    ||||||||||||| ||| ||||||||| || ||| ||||||||||||||||    
T  25140725 ttacaaacatgttcagaattggtgctgatgctgttcggattacgtaatccg 25140775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 165
Target Start/End: Original strand, 31582498 - 31582560
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctat 165  Q
    ||||| |||||| ||| | ||| |||||||||||||| ||||||||||||||| |||| ||||    
T  31582498 aaaaagggtgtttagggggtttccggattatgtaatcagaaaacatcatgtaatgcgccctat 31582560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 53894108 - 53894169
Alignment:
Q  144 aacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatccgt 204  Q
    ||||||||||||||||| ||||||||| |||||||  |||| |||||| |||||||| ||||    
T  53894108 aacatcatgtaacgcgccctattttttgaagtttcctgattgcaaaatccggaaaaacccgt 53894169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 41413199 - 41413231
Alignment:
Q  126 cggattatgtaatccgaaaacatcatgtaacgc 158  Q
    |||||||||||||||| ||||||||||||||||    
T  41413199 cggattatgtaatccggaaacatcatgtaacgc 41413231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 42660383 - 42660435
Alignment:
Q  36 tattacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccg 88  Q
    ||||||||||||| | ||| |||||||||||| | |||||||||| |||||||    
T  42660383 tattacaaacatgctcagaattggtgctggtgctatccggattacataatccg 42660435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 142039 - 142138
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | ||| |||||||||||||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||||  |||||||||    
T  142039 aaaaagggtgtttagggggtttccggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttccggattacaaaatctggaaaaatc 142138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 3494 - 3568
Alignment:
Q  126 cggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaa 199  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| |||||||| |||||||||||||| |||||    
T  3494 cggattatgtaatccggaaacatcatgtaacgcgccctattttttgaagtttctagattacaaaattcgaaaaaa 3568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 209
Target Start/End: Complemental strand, 23205 - 23098
Alignment:
Q  103 aaaaatggtgttcaggcgattttcggattatgtaatccgaaaacatcatgtaacgcgctctatttttt-aagtttctggattacaaaattcggaaaaatc 201  Q
    ||||| |||||| ||| | ||| |||||||| ||||||| ||||||||||||| || | ||||||||| ||||||| |||||| ||||||||||||||||    
T  23205 aaaaaaggtgtttagggggtttccggattatataatccggaaacatcatgtaatgcaccctattttttgaagtttccggattataaaattcggaaaaatc 23106  T
Q  202 cgtaactc 209  Q
    ||| ||||    
T  23105 cgttactc 23098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 95
Target Start/End: Original strand, 205816 - 205873
Alignment:
Q  38 ttacaaacatgtttagatttggtgctggtgttgtccggattacgtaatccggattgca 95  Q
    ||||||||||||| ||| |||||||||||| |||| ||||||||||||||||||||||    
T  205816 ttacaaacatgttcagaattggtgctggtgatgtctggattacgtaatccggattgca 205873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University