View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7575_high_4 (Length: 469)

Name: NF7575_high_4
Description: NF7575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7575_high_4
NF7575_high_4
[»] chr7 (2 HSPs)
chr7 (123-397)||(1801560-1801834)
chr7 (1-45)||(1801438-1801482)
[»] chr8 (1 HSPs)
chr8 (398-453)||(9230985-9231040)
[»] chr4 (1 HSPs)
chr4 (398-453)||(18351548-18351603)
[»] chr5 (2 HSPs)
chr5 (398-446)||(2914974-2915022)
chr5 (398-440)||(40808362-40808404)
[»] chr6 (1 HSPs)
chr6 (398-454)||(7999423-7999479)
[»] chr2 (1 HSPs)
chr2 (398-437)||(30242333-30242372)


Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 123 - 397
Target Start/End: Original strand, 1801560 - 1801834
Alignment:
Q  123 aatggttacattgtgagtgtgaaaaataatatgcttttgtgatggagatatattgttacaatgtggttgaaacatctatttagtaacattattaggagtt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1801560 aatggttacattgtgagtgtgaaaaataatatgcttttgtgatggagatatattgttacaatgtggttgaaacatctatttagtaacattattaggagtt 1801659  T
Q  223 gaaatgtgtatttgtttcttttgataggtactttattgtgtttgtagatctaaatgttctcatatagctcaatttgttgtgaaatcatctattattcaaa 322  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1801660 gaaatgtgtatttgtttcttttgataggtagtttattgtgtttgtagatctaaatgttctcatatagctcaatttgttgtgaaatcatctattattcaaa 1801759  T
Q  323 tatgttatattaatttggatgttaaaaagtaagatatttgtcattctcataaatgaaatgtttgatgtacattca 397  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  1801760 tatgttatattaatttggatgttaaaaagtaagatatgtgtcattctcataaaggaaatgtttgatgtacattca 1801834  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1801438 - 1801482
Alignment:
Q  1 atgaagatgtcgagactagtttgaagaatttgattcaagcacttg 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  1801438 atgaagatgtcgagactagtttgaagaatttgattcaagcacttg 1801482  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 398 - 453
Target Start/End: Complemental strand, 9231040 - 9230985
Alignment:
Q  398 aattttcttgtgcacgtgtgcgaatatattttggaaaatgagtcaccattgatatc 453  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9231040 aattttcttgtgcacgtgtgcgaagatattttggaaaatgagtcaccattgatatc 9230985  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 398 - 453
Target Start/End: Original strand, 18351548 - 18351603
Alignment:
Q  398 aattttcttgtgcacgtgtgcgaatatattttggaaaatgagtcaccattgatatc 453  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18351548 aattttcttgtgcacgtgtgcgaagatattttggaaaatgagtcaccattgatatc 18351603  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 398 - 446
Target Start/End: Original strand, 2914974 - 2915022
Alignment:
Q  398 aattttcttgtgcacgtgtgcgaatatattttggaaaatgagtcaccat 446  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2914974 aattttcttgtgcacgtgtgcgaagatattttggaaaatgagtcaccat 2915022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 398 - 440
Target Start/End: Original strand, 40808362 - 40808404
Alignment:
Q  398 aattttcttgtgcacgtgtgcgaatatattttggaaaatgagt 440  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  40808362 aattttcttgtgcacgtgtgcgaagatattttggaaaatgagt 40808404  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 398 - 454
Target Start/End: Complemental strand, 7999479 - 7999423
Alignment:
Q  398 aattttcttgtgcacgtgtgcgaatatattttggaaaatgagtcaccattgatatct 454  Q
    |||||||||| ||| ||||||||| |||||||| |||||||||||||||||||||||    
T  7999479 aattttcttgagcatgtgtgcgaagatattttgaaaaatgagtcaccattgatatct 7999423  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 398 - 437
Target Start/End: Original strand, 30242333 - 30242372
Alignment:
Q  398 aattttcttgtgcacgtgtgcgaatatattttggaaaatg 437  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30242333 aattttcttgtgcacgtgtgcgaatatattttggaaaatg 30242372  T

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