View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7575_low_1 (Length: 572)
Name: NF7575_low_1
Description: NF7575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7575_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 17 - 555
Target Start/End: Original strand, 14368992 - 14369534
Alignment:
| Q |
17 |
ccgggccaagtatgtaaatgtgtatgaagagtttccagacttggtgtaaaacacacgatgatgatagtcatgaaaatcggctctggaaatggagatataa |
116 |
Q |
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| T |
14368992 |
ccggtccatgtatgtaaaggttgatgaatagtttccagacttggtgtacaacacacgatgatgatagtcatgaaaatcggctctggaaatggagatataa |
14369091 |
T |
|
| Q |
117 |
attttaactacagagnnnnnnncaaaataaccgaaactaataggttgatgtcaagt-----aaaggaaaaggaaactcaccctccataaagtggtaagaa |
211 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14369092 |
attttaactatagagaaataatcaaaataaccgaaactaataggttgatgtcaagtaaagtaaaggaaaaggaaactcaccctccataaagtggtaagaa |
14369191 |
T |
|
| Q |
212 |
gtttgaggggctccatgggaaatgataaccgcaatgtgcctcaactgtctcgaggactctaagaaccgtatatagccaaagagtaatcaagtgaggacca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14369192 |
gtttgaggggctccatgggaaatgataaccgcaatgtgcctcaactgtctcgaggactctaagaaccgtatatagccaaagagtaatcaagtgaggacca |
14369291 |
T |
|
| Q |
312 |
gtgatagcaggaccaagcatggtcggaaatccaaggaataaaatctcagcaggatgaccatattcagaagtcagtccaaatggtgtggcataccttcaca |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14369292 |
gtgatagcaggaccaagcatggtcggaaatccaaggaataaaatctccgcaggatgaccatattcagaagtcagtccaaatggtgtggcataccttcaca |
14369391 |
T |
|
| Q |
412 |
acatagttaaaaatctttgaacttcaagaaaaacacaaaaccacttcacagctcattgataatttgtagaacatgtataaaacttactcgtgatgaactc |
511 |
Q |
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| T |
14369392 |
acatagttaaaaatctttgaacttcaagaaaaacccaaaaccacttcacagctcattgataa-ttgtagaacatgtataaaacttactcgtgatgaactc |
14369490 |
T |
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| Q |
512 |
tatgtacgtgtttgtacaaccattttgtgtgcattatcctatgt |
555 |
Q |
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| T |
14369491 |
tatgtacgtgtttgtacaaccattttgtgtgcattatcctatgt |
14369534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 17 - 555
Target Start/End: Original strand, 26464562 - 26465112
Alignment:
| Q |
17 |
ccgggccaagtatgtaaatgtgtatgaagagtttccagacttggtgtaaaacacacgatgatgatagtcatgaaaatcggctctggaaatggagatataa |
116 |
Q |
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|||| ||| ||||||||| || ||||| ||||||||||||| ||||| |||| |||||||||||||||||||||||||| |||| ||||||| |||||| |
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| T |
26464562 |
ccggtccatgtatgtaaaggttgatgaatagtttccagacttagtgtacaacaaacgatgatgatagtcatgaaaatcggatctgaaaatggatatataa |
26464661 |
T |
|
| Q |
117 |
attttaactacagagnnnnnnncaaaataaccgaaactaataggttgatgtcaagtaaaggaaaaggaa------actcaccctccataaagtggtaaga |
210 |
Q |
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|||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
26464662 |
attttaacaacagagaaataaacaaaataaccgaaactaaaaggttgatgtcaagtaaaggaaagggaacatgaaactcaccctccataaagtggtaaga |
26464761 |
T |
|
| Q |
211 |
agtttgaggggctccatgggaaatgataaccgcaatgtgcctcaactgtctcgaggactctaagaaccgtatatagccaaagagtaatcaagtgaggacc |
310 |
Q |
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| T |
26464762 |
agtttgaggggctccatgggaaatgataaccacaatgtgcctcaactgtctcaaggactctaagaaccatccatagccaaagagtaatcaagtgaggacc |
26464861 |
T |
|
| Q |
311 |
agtgatagcaggaccaagcatggtcggaaatccaaggaataaaatctcagcaggatgaccatattcagaagtcagtccaaatggtgtggcataccttcac |
410 |
Q |
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||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
26464862 |
agtgatagcaggaccaacaatggtcgcaaatccaaggaatagtatctcagcaggatgagcgtattcagaagtcagtccaaatggtgtggcataccttcac |
26464961 |
T |
|
| Q |
411 |
aacatagttaaa-aat------ctttgaacttcaagaaaaacacaaaaccacttcacagctcattgataatttgtagaacatgtataaaacttactcgtg |
503 |
Q |
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|||||||||||| ||| |||||| |||| |||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
26464962 |
aacatagttaaacaataaacacctttgagcttcgagaaaaacccaaaaccacttcacagctaattgataa-ttgtagaacatgtataaaacttactcgtg |
26465060 |
T |
|
| Q |
504 |
atgaactctatgtacgtgtttgtacaaccattttgtgtgcattatcctatgt |
555 |
Q |
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||||| |||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
26465061 |
gtgaacactatgtacatgtttgtacaaccattttgtgtgcagtatcctatgt |
26465112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 183 - 412
Target Start/End: Complemental strand, 15316282 - 15316053
Alignment:
| Q |
183 |
gaaactcaccctccataaagtggtaagaagtttgaggggctccatgggaaatgataaccgcaatgtgcctcaactgtctcgaggactctaagaaccgtat |
282 |
Q |
| |
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||||||||||| ||||| | || | |||||||||||| ||||| || ||||| |||||||||||||||||||||||||| | |||||| | |||| | |
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| T |
15316282 |
gaaactcacccgccatataagggaaggaagtttgagggactccacggaaaatggtaaccgcaatgtgcctcaactgtctctaagactctcacaaccatcc |
15316183 |
T |
|
| Q |
283 |
atagccaaagagtaatcaagtgaggaccagtgatagcaggaccaagcatggtcggaaatccaaggaataaaatctcagcaggatgaccatattcagaagt |
382 |
Q |
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||| ||| | ||| |||||||| || |||||||| ||||| |||| ||||| | ||| |||||||| | || || ||||||||| ||||||| ||||| |
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| T |
15316182 |
ataaccacaaagttatcaagtggggcccagtgatggcagggccaacaatggttgcaaacccaaggaaaagtatttcggcaggatgagcatattccgaagt |
15316083 |
T |
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| Q |
383 |
cagtccaaatggtgtggcataccttcacaa |
412 |
Q |
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|||||||||||||| |||||||||||||| |
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| T |
15316082 |
aagtccaaatggtgtcgcataccttcacaa |
15316053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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