View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7575_low_2 (Length: 491)
Name: NF7575_low_2
Description: NF7575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7575_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 1254441 - 1253969
Alignment:
| Q |
1 |
acacaatatattattgaattttccaaataagttttttcttttgaaataaattttccaagtaagttgaaaatcatgagtaaatgaataattttaaccagaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1254441 |
acacaatatattattgaattttccaaataagttttttcttttgaaataaattttccaagtaagttgaaaatcatgagtaaatgaataattttaaccagaa |
1254342 |
T |
|
| Q |
101 |
aaaattaaccatgttgatgcaaaaatataatgaatctttacttgccagaaaatgaagttgaaggctcattgcttaagctatttggtattggaccctccaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1254341 |
aaaattaaccatgttgatgcaaaaatataatgaatctttacttaccagaaaatgaagttgaaggctcattgcttaagctatttggtattggaccctccaa |
1254242 |
T |
|
| Q |
201 |
ttgattgttagacaagtcaaatactctaaaaccattttgttgaaattcaggtatgttacctccaaaactattcccatgcaaatccaaatccaaaagtcta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1254241 |
ctgattgttagacaagtcaaatactctaaaaccattttgttgaaattcaggtatgttacctccaaaactattcccatgcaaatccaaatccaaaagtcta |
1254142 |
T |
|
| Q |
301 |
ggcaatttagcaagtgaaagaggaatatgaccattgaacccatttcctgccaaaaatacccttttaagatttcccataccctcaaaactatcatctaaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1254141 |
ggcaatttagcaagtgaaagaggaatatgaccattgaacccatttcctgccaaaaatacccttttaagatttcccataccctcaaaactatcatctgaaa |
1254042 |
T |
|
| Q |
401 |
tttcaccagagaatttattattagacaaaaacaatccccttaacttcacaagtttcttgaattcaggcattgg |
473 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
1254041 |
tttcaccagagaatttattattagacaaaaacaatccccttaacttcacaagcttcttgaattcaggcattgg |
1253969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 139 - 473
Target Start/End: Complemental strand, 1245843 - 1245510
Alignment:
| Q |
139 |
tacttgccagaaaatgaagttgaaggctcattgcttaagctatttggtattggaccctccaattgattgttagacaagtcaaatactctaaaaccatttt |
238 |
Q |
| |
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||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||| |
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| T |
1245843 |
tacttaccagaaaatgaggttgaaggctcattgcttaagcgtattggtattggaccctccaattgattgttagacaagttaaatactctgaaatcatttt |
1245744 |
T |
|
| Q |
239 |
gttgaaattcaggtatgttacctccaaaactattcccatgcaaatccaaatccaaaagtctaggcaatttagcaagtgaaagaggaatatgaccattgaa |
338 |
Q |
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|||||||||||||||| |||||| |||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||| |||||||||||| | || |
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| T |
1245743 |
gttgaaattcaggtatattaccttcaaaaccattcccatgcaagtccaaatcc-aaagtttaggcaatttagcaagtgaaacaggaatatgacccataaa |
1245645 |
T |
|
| Q |
339 |
cccatttcctgccaaaaatacccttttaagatttcccataccctcaaaactatcatctaaaatttcaccagagaatttattattagacaaaaacaatccc |
438 |
Q |
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|||| | ||||||| || |||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| ||| || |
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| T |
1245644 |
attatttttttccaaaaacacgcttttaagattttccataccctcaaaactatcatctaaaattttacctgagaatttattattggacaaaaataatgcc |
1245545 |
T |
|
| Q |
439 |
cttaacttcacaagtttcttgaattcaggcattgg |
473 |
Q |
| |
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|||| |||||| |||||||||||||||||||| |
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|
| T |
1245544 |
cttagactcacaaccttcttgaattcaggcattgg |
1245510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 183 - 472
Target Start/End: Complemental strand, 36124622 - 36124333
Alignment:
| Q |
183 |
tggtattggaccctccaattgattgttagacaagtcaaatactctaaaaccattttgttgaaattcaggtatgttacctccaaaactattcccatgcaaa |
282 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || | ||| ||||| |||||| | ||| |||| || ||||| || || |||| ||||| ||||| ||| |
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| T |
36124622 |
tggtattgcaccctccaattgattgttagataaattaaacactctgaaaccactctgtagaaaatctggtatattgccatcaaagctatttccatgtaaa |
36124523 |
T |
|
| Q |
283 |
tccaaatccaaaagtctaggcaatttagcaagtgaaagaggaatatgaccattgaacccatttcctgccaaaaatacccttttaagatttcccataccct |
382 |
Q |
| |
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|| | ||| ||||||||||||||| |||||| || |||||||||||| || || |||||| |||| || ||||| || || || || | || | |
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| T |
36124522 |
tcaatatcataaagtctaggcaattgagcaagggatttaggaatatgacccttaaatccattttctgctaagaatactctcttgagccatcttaaccctt |
36124423 |
T |
|
| Q |
383 |
caaaactatcatctaaaatttcaccagagaatttattattagacaaaaacaatccccttaacttcacaagtttcttgaattcaggcattg |
472 |
Q |
| |
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||||| |||||| ||||||||||||||||||||| || | || ||||||| ||||||| ||||| ||| |||||| |||||||| |
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| T |
36124422 |
caaaagcatcatcaggaatttcaccagagaatttatttttggtcagaaacaatgcccttaatcccacaattttattgaatgaaggcattg |
36124333 |
T |
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