View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7576_high_1 (Length: 483)
Name: NF7576_high_1
Description: NF7576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7576_high_1 |
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| [»] scaffold0143 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 17 - 469
Target Start/End: Original strand, 44545724 - 44546181
Alignment:
| Q |
17 |
gaaggtagccaaataagggcaagagatgattcaaatttatgcttaaatgacgaagatatacccgaaccacccccgacaaagaaaacaaag---------a |
107 |
Q |
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| T |
44545724 |
gaaggtagccaaataagggcaagagatgattcaaatttatgcttaaatgacgaagatatacccgaaccacccccgacaaagaagacaaagaagagaaaga |
44545823 |
T |
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| Q |
108 |
agacgaagaagacgaagaaggagcgtgtggtatggtctttagaattacatgagcaattcatgaaggctgttaaagaacttgatgcttccagttccagttc |
207 |
Q |
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| T |
44545824 |
agacgaagaagacgaagaaggagcgtgtggtatggtctttagaattacatgagcaattcatgaaggctgttaaagaacttgatgcttccagttccagttc |
44545923 |
T |
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| Q |
208 |
cagttccagtacgcattctttacctattcttgtttttatcaaaagtttaatgaatttattcgtagtttactctaacatctaatatgaatcaactatttat |
307 |
Q |
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| T |
44545924 |
cagttccagtacgcattctttacctattcttgtttttatcaaaagtttaatcaatttattcgtagtttactctaacatctaatatgaatcaactattgat |
44546023 |
T |
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| Q |
308 |
gcatgtcatatcattaaagtgacatgtagtggagtgatttgaagagatgattatactagatgacagtgtaaaatttgtttttggaaataaagttcaattt |
407 |
Q |
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| T |
44546024 |
gcatgtcatatcattaaagtgacatgtagtggagtgatttgaagagatgattatactagatgacagtgtaaaatttgtttttggaaataaagttcaatt- |
44546122 |
T |
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| Q |
408 |
atatatatttttgcaacttgtgataacaannnnnnnctctctcactctttctctttgtttat |
469 |
Q |
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| T |
44546123 |
---tatatttttgcaacttgtcataacaatttttttctctctcactctttctctttgtttat |
44546181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 349
Target Start/End: Original strand, 33481291 - 33481370
Alignment:
| Q |
270 |
tagtttactctaacatctaatatgaatcaactatttatgcatgtcatatcattaaagtgacatgtagtggagtgatttga |
349 |
Q |
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| T |
33481291 |
tagtttacactaacatctaatatgaattaactatttctccacgtcataccatgtaagtgtagtgtagtggggtgatttga |
33481370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 6524775 - 6524813
Alignment:
| Q |
17 |
gaaggtagccaaataagggcaagagatgattcaaattta |
55 |
Q |
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| T |
6524775 |
gaaggtagccaaataagggcaagagatgattcaaattta |
6524813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0143 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0143
Description:
Target: scaffold0143; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 349
Target Start/End: Complemental strand, 5390 - 5311
Alignment:
| Q |
270 |
tagtttactctaacatctaatatgaatcaactatttatgcatgtcatatcattaaagtgacatgtagtggagtgatttga |
349 |
Q |
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| T |
5390 |
tagtttacactaacatctaatatgaattaactatttctccacgtcataccatgtaagtgtagtgtagtggggtgatttga |
5311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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