View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7576_high_2 (Length: 478)
Name: NF7576_high_2
Description: NF7576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7576_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 19 - 473
Target Start/End: Complemental strand, 490173 - 489719
Alignment:
| Q |
19 |
tacttttctgcagacagcttaactaaacaagtcctacattgagcataagttgagaagccaaagacattttgcttgtattaagagataatcatctaatagc |
118 |
Q |
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| T |
490173 |
tacttttctgcaggcagcttaactaaacaagtcctacattgagcataagttgagaagccaaagacattttgcttgtattaagagataatcatctaatagc |
490074 |
T |
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| Q |
119 |
acaaatgccaccagctctcaaaagtataaactcagtcatcttcatttgtacaactaggacagtaacctaattagtattgaccacctaaccagtatcagtt |
218 |
Q |
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| T |
490073 |
acaaatgccaccagctctcaaaagtataaactcagtcatcttcatttgtacaactaggacagtaacctaattagtattgaccacctaaccagtatcagtt |
489974 |
T |
|
| Q |
219 |
caaaacaaagaaaaatgaatatgattgagttttgagaaatgcataatcgttttatcttgtttttgtcgaaccaccaacaatcaattcaatgtctcaaact |
318 |
Q |
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| T |
489973 |
caaaacaaagaaaaatgaatatgattgagttttgagaaatgcataatcgttttatcttgtttttgtcgaaccaccaacaatcaattcaatgtctcaaact |
489874 |
T |
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| Q |
319 |
cttagccgtgacaacaaagaggcaacatctgttgttgttaaagtttcaaacagttttcaagtattaatcaacaatagactaatatactatcaaagtagcc |
418 |
Q |
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| T |
489873 |
cttagccgtgacaacaaagaggcaacatctgttgctgttaaagtttcaaacaattttcaagtattaatcaacaatagactaatatactatcaaagtagcc |
489774 |
T |
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| Q |
419 |
gcagtagagtttatcaattaactgttgctcataccaacataactcaacaccaaac |
473 |
Q |
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| T |
489773 |
gcagtagagtttatcaattaactgttgctcataccaacataactcgacaccaaac |
489719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 493014 - 492930
Alignment:
| Q |
22 |
ttttctgcagacagcttaactaaacaagtcctacattgagcataagttgagaagccaaagacattttgcttgtattaagagataa |
106 |
Q |
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| T |
493014 |
ttttcagcagacagcttaactatacgggtcctacattaagcataagttgaaaagcctaagatattttgactgtatttagagataa |
492930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 385
Target Start/End: Complemental strand, 501348 - 501294
Alignment:
| Q |
331 |
aacaaagaggcaacatctgttgttgttaaagtttcaaacagttttcaagtattaa |
385 |
Q |
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||||| |||||| |||||||| | ||| |||||||||||| |||||||||||||| |
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| T |
501348 |
aacaaggaggcaccatctgttatggttgaagtttcaaacaattttcaagtattaa |
501294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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