View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7576_high_9 (Length: 247)
Name: NF7576_high_9
Description: NF7576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7576_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 45283418 - 45283641
Alignment:
| Q |
1 |
cttggcaccattttcctttccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatg |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283418 |
cttggcaccattttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatg |
45283517 |
T |
|
| Q |
101 |
tatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45283518 |
tatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgagttttggcacataattctaagatttc |
45283617 |
T |
|
| Q |
201 |
tttgttgagtttgaacctcggggt |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
45283618 |
tttgttgagtttgaacctcggggt |
45283641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 45275177 - 45275400
Alignment:
| Q |
1 |
cttggcaccattttcctttccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
45275177 |
cttggcaccattttcctttccatactcagtggtgagcctttcactcatgttaaaggcgttcatgacattgtcagtggctgccttcacggcggctgctatg |
45275276 |
T |
|
| Q |
101 |
tatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttc |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45275277 |
tatgccttagggtcagcggcatcggcgccatgcacagagctaagagtttcatggcagagtttctggtcttgtgcgttttggcacataattctaagatttc |
45275376 |
T |
|
| Q |
201 |
tttgttgagtttgaacctcggggt |
224 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
45275377 |
tttgttgagtttgaacctcagggt |
45275400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 45271644 - 45271861
Alignment:
| Q |
1 |
cttggcaccattttcctttccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatg |
100 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
45271644 |
cttggcaccatttttctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcagtggctgccttcacggctgctgctatg |
45271743 |
T |
|
| Q |
101 |
tatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttc |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45271744 |
tatgccttagggtcagcggcatcggcgccacgcacagagctaagagtgtcatgacagagtttctggtcttgtgcgttttggcacataattctaagatttc |
45271843 |
T |
|
| Q |
201 |
tttgttgagtttgaacct |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
45271844 |
tttgttgagtttgaacct |
45271861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 45294806 - 45295029
Alignment:
| Q |
1 |
cttggcaccattttcctttccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatg |
100 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||| |
|
|
| T |
45294806 |
cttggtaccatcttcctttccatactcagtggtgagcctgtcactcatgttaaaggccttaatgacattgtcagtggctgcctttacagcggctgctatg |
45294905 |
T |
|
| Q |
101 |
tatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttc |
200 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||| | ||| ||||||||||||| | |||| || |
|
|
| T |
45294906 |
tatgccttagggtcagcggcgtcggcgccacgcacagagctaagtgtttcatggcagagtttttggtcatctgcattttggcacataacttgaagagatc |
45295005 |
T |
|
| Q |
201 |
tttgttgagtttgaacctcggggt |
224 |
Q |
| |
|
|||||||||||| |||||| |||| |
|
|
| T |
45295006 |
tttgttgagttttaacctcagggt |
45295029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 45303766 - 45303989
Alignment:
| Q |
1 |
cttggcaccattttcctttccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatg |
100 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||| |
|
|
| T |
45303766 |
cttggtaccatcttcctttccatactcagtggtgagcctgtcactcatgttaaaggccttaatgacattgtcagtggctgcctttacagcggctgctatg |
45303865 |
T |
|
| Q |
101 |
tatgccttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttc |
200 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||| | ||| ||||||||||||| | |||| || |
|
|
| T |
45303866 |
tatgccttagggtcagcggcgtcggcgccacgcacagagctaagtgtttcatggcagagtttttggtcatctgcattttggcacataacttgaagagatc |
45303965 |
T |
|
| Q |
201 |
tttgttgagtttgaacctcggggt |
224 |
Q |
| |
|
|||||||||||| |||||| |||| |
|
|
| T |
45303966 |
tttgttgagttttaacctcagggt |
45303989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University