View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7576_low_10 (Length: 235)

Name: NF7576_low_10
Description: NF7576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7576_low_10
NF7576_low_10
[»] chr6 (12 HSPs)
chr6 (91-216)||(21118454-21118579)
chr6 (91-204)||(21118736-21118849)
chr6 (91-216)||(14763853-14763978)
chr6 (91-216)||(14766430-14766555)
chr6 (91-207)||(32342064-32342180)
chr6 (8-80)||(14763736-14763808)
chr6 (18-84)||(21118322-21118388)
chr6 (12-84)||(14766296-14766368)
chr6 (97-168)||(20727499-20727570)
chr6 (32-80)||(20727615-20727663)
chr6 (17-84)||(32342243-32342310)
chr6 (165-213)||(20726741-20726789)
[»] chr8 (6 HSPs)
chr8 (91-216)||(392333-392458)
chr8 (91-211)||(7278077-7278197)
chr8 (91-151)||(7284629-7284689)
chr8 (18-66)||(7277948-7277996)
chr8 (18-93)||(3581559-3581634)
chr8 (31-67)||(7284513-7284549)
[»] chr5 (11 HSPs)
chr5 (91-215)||(41341011-41341135)
chr5 (91-216)||(35428347-35428475)
chr5 (91-216)||(35429930-35430055)
chr5 (91-216)||(7400492-7400617)
chr5 (14-84)||(35428215-35428285)
chr5 (8-84)||(41341197-41341273)
chr5 (91-211)||(7658948-7659070)
chr5 (14-84)||(35429798-35429868)
chr5 (131-216)||(13661689-13661774)
chr5 (13-178)||(18009205-18009373)
chr5 (24-84)||(30921521-30921581)
[»] chr3 (13 HSPs)
chr3 (97-208)||(38183136-38183247)
chr3 (91-199)||(17731091-17731199)
chr3 (91-199)||(19032322-19032430)
chr3 (8-84)||(17730951-17731028)
chr3 (8-84)||(19032182-19032259)
chr3 (102-200)||(1026785-1026883)
chr3 (99-207)||(21344714-21344826)
chr3 (8-82)||(40195693-40195767)
chr3 (8-69)||(43979392-43979453)
chr3 (132-204)||(3371390-3371462)
chr3 (8-70)||(3371585-3371647)
chr3 (19-71)||(3372473-3372525)
chr3 (8-84)||(1026957-1027033)
[»] chr7 (11 HSPs)
chr7 (91-216)||(5448886-5449011)
chr7 (103-216)||(5439888-5440001)
chr7 (91-211)||(15588679-15588799)
chr7 (91-167)||(5438883-5438959)
chr7 (8-84)||(5439738-5439814)
chr7 (8-84)||(5448748-5448824)
chr7 (97-200)||(15589819-15589922)
chr7 (91-167)||(5447893-5447969)
chr7 (8-84)||(5447753-5447829)
chr7 (8-80)||(15589672-15589744)
chr7 (32-84)||(5438767-5438819)
[»] chr1 (10 HSPs)
chr1 (91-216)||(52022096-52022221)
chr1 (91-216)||(6139788-6139913)
chr1 (91-177)||(6138206-6138292)
chr1 (18-80)||(6138358-6138420)
chr1 (18-84)||(3742544-3742609)
chr1 (91-179)||(5397354-5397436)
chr1 (33-81)||(6139978-6140026)
chr1 (98-178)||(43834965-43835045)
chr1 (17-84)||(52022287-52022354)
chr1 (131-179)||(2595366-2595414)
[»] chr2 (4 HSPs)
chr2 (91-207)||(4660133-4660248)
chr2 (91-197)||(20594608-20594714)
chr2 (129-179)||(33301075-33301125)
chr2 (18-70)||(31073577-31073629)
[»] chr4 (8 HSPs)
chr4 (91-200)||(31322562-31322671)
chr4 (91-179)||(14508735-14508823)
chr4 (129-216)||(45676680-45676767)
chr4 (91-211)||(31327178-31327298)
chr4 (99-165)||(10550049-10550115)
chr4 (18-71)||(10549927-10549980)
chr4 (31-84)||(14508886-14508939)
chr4 (91-175)||(41848369-41848453)


Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 91 - 216
Target Start/End: Original strand, 21118454 - 21118579
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 190  Q
    ||||| ||||||||||||||||||||||||| | | | |||||||||||||||||||||||||| ||||||||||||||||||| |||| | ||||||||    
T  21118454 ttaaactaagtcagatataagcttaaagtgctattgactggtgcatctaaaaacaaagaaactaggttcaatatatagccttggccttcctcttgcttca 21118553  T
Q  191 ctaaactaagcgatgtgggacataat 216  Q
    ||||||||||||||||||||||||||    
T  21118554 ctaaactaagcgatgtgggacataat 21118579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 91 - 204
Target Start/End: Original strand, 21118736 - 21118849
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 190  Q
    ||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| ||||||||||||||||||| |||| | ||||||||    
T  21118736 ttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactaggttcaatatatagccttggccttcctcttgcttca 21118835  T
Q  191 ctaaactaagcgat 204  Q
    ||||||||||||||    
T  21118836 ctaaactaagcgat 21118849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 91 - 216
Target Start/End: Original strand, 14763853 - 14763978
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 190  Q
    ||||| ||||||||||| ||||||||||||| ||| | |||| |||||||||||||||||||||  ||||||| ||||| |||||||||   ||||||||    
T  14763853 ttaaactaagtcagatacaagcttaaagtgctactgactggtacatctaaaaacaaagaaactagattcaataaatagctttggtcttccccttgcttca 14763952  T
Q  191 ctaaactaagcgatgtgggacataat 216  Q
    ||||||||||||||||||||||||||    
T  14763953 ctaaactaagcgatgtgggacataat 14763978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 91 - 216
Target Start/End: Original strand, 14766430 - 14766555
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 190  Q
    ||||| ||||||||||| ||||||||||||| | | | | ||||||||||||||||| |||||| |||||||||||||||||||||||||  ||||||||    
T  14766430 ttaaactaagtcagatacaagcttaaagtgctattgactagtgcatctaaaaacaaaaaaactaggttcaatatatagccttggtcttctccttgcttca 14766529  T
Q  191 ctaaactaagcgatgtgggacataat 216  Q
    |||||||||| ||||| |||||||||    
T  14766530 ctaaactaagtgatgttggacataat 14766555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 91 - 207
Target Start/End: Complemental strand, 32342180 - 32342064
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 190  Q
    ||||| ||||||||||||||||||||||||  ||| |  |||||||||||||||||||||  ||  |||||||||||||||||||||||   ||||||||    
T  32342180 ttaaactaagtcagatataagcttaaagtgttactgaccggtgcatctaaaaacaaagaacttatattcaatatatagccttggtcttccctttgcttca 32342081  T
Q  191 ctaaactaagcgatgtg 207  Q
    | ||||||| |||||||    
T  32342080 ccaaactaaccgatgtg 32342064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 14763736 - 14763808
Alignment:
Q  8 aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttaca 80  Q
    |||||| || |||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||    
T  14763736 aaaccgaagaaaaaaccacgactgttgtctaaaccgacaaccagagaattataactatgtgaaaatttttaca 14763808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 21118322 - 21118388
Alignment:
Q  18 aaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 84  Q
    ||||||||| || |||||||||| ||||||||| || |||||||||||||||||||| |||||||||    
T  21118322 aaaaaccacaaccgttgtctaaatcgacaaccaaagaattattactatgtgaaaatttttacaacac 21118388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 14766296 - 14766368
Alignment:
Q  12 cggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 84  Q
    ||||| |||||||||||| ||||||||||||||||||||||| ||||| | | |||||||| | |||||||||    
T  14766296 cggagaaaaaaccacgaccgttgtctaaaccgacaaccagagaattatcattttgtgaaaaattttacaacac 14766368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 20727570 - 20727499
Alignment:
Q  97 taagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatag 168  Q
    |||||||||||||||| |||||||| | | ||| ||||||||||||||||||||  || |||||||||||||    
T  20727570 taagtcagatataagcataaagtgctattgattagtgcatctaaaaacaaagaacataggttcaatatatag 20727499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 20727663 - 20727615
Alignment:
Q  32 ttgtctaaaccgacaaccagagtattattactatgtgaaaattgttaca 80  Q
    |||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  20727663 ttgtctaaaccgacaatcagagaattattactatgtgaaaatttttaca 20727615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 32342310 - 32342243
Alignment:
Q  17 gaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 84  Q
    |||||||||| |  |||||||||||| ||||||| || ||||||||||||||||  || |||||||||    
T  32342310 gaaaaaccactatcgttgtctaaaccaacaaccatagaattattactatgtgaatttttttacaacac 32342243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 20726789 - 20726741
Alignment:
Q  165 atagccttggtcttcttattgcttcactaaactaagcgatgtgggacat 213  Q
    |||| |||||||||| | ||||||||| ||||||||| |||||||||||    
T  20726789 atagtcttggtcttcctcttgcttcaccaaactaagcaatgtgggacat 20726741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 91 - 216
Target Start/End: Original strand, 392333 - 392458
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 190  Q
    ||||| ||||||||||||||||||||||||| ||| | || || |||||||||||||||||||| ||||||||||||||||||||||||   ||||||||    
T  392333 ttaaactaagtcagatataagcttaaagtgctactaactgatgtatctaaaaacaaagaaactacgttcaatatatagccttggtcttccccttgcttca 392432  T
Q  191 ctaaactaagcgatgtgggacataat 216  Q
    ||||||||||||||||||||||||||    
T  392433 ctaaactaagcgatgtgggacataat 392458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 91 - 211
Target Start/End: Original strand, 7278077 - 7278197
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 190  Q
    ||||| ||||||||||||||||||||||||| ||| | ||||||||||| |||||||||| ||| || |||||||||| | ||||| ||  |||||||||    
T  7278077 ttaaactaagtcagatataagcttaaagtgctactgactggtgcatctacaaacaaagaacctaggtccaatatatagtcatggtcctcccattgcttca 7278176  T
Q  191 ctaaactaagcgatgtgggac 211  Q
    | | |||||||||||| ||||    
T  7278177 ccacactaagcgatgtaggac 7278197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 7284629 - 7284689
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaa 151  Q
    ||||| ||||||||||||||| ||||||||  ||| |||||||| ||||||||||||||||    
T  7284629 ttaaactaagtcagatataagtttaaagtggtactaattggtgcgtctaaaaacaaagaaa 7284689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 7277948 - 7277996
Alignment:
Q  18 aaaaaccacgacggttgtctaaaccgacaaccagagtattattactatg 66  Q
    |||||||||||| ||||||||||||||||||||||  || |||||||||    
T  7277948 aaaaaccacgaccgttgtctaaaccgacaaccagaaaatgattactatg 7277996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 3581634 - 3581559
Alignment:
Q  18 aaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacacgtatactta 93  Q
    |||||||||||  || ||||||||||||||||| || ||| ||| |||||||| ||| ||||||||| || |||||    
T  3581634 aaaaaccacgatcgtcgtctaaaccgacaaccaaagaattgttattatgtgaagatttttacaacacatagactta 3581559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 7284513 - 7284549
Alignment:
Q  31 gttgtctaaaccgacaaccagagtattattactatgt 67  Q
    |||||||||||||||||||| || |||||||||||||    
T  7284513 gttgtctaaaccgacaaccaaagaattattactatgt 7284549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 91 - 215
Target Start/End: Complemental strand, 41341135 - 41341011
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 190  Q
    ||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||| ||| |||||||| | |||||||||   ||||||||    
T  41341135 ttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactaggtttaatatataactttggtcttccccttgcttca 41341036  T
Q  191 ctaaactaagcgatgtgggacataa 215  Q
    |||||||||||||||||||||||||    
T  41341035 ctaaactaagcgatgtgggacataa 41341011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 91 - 216
Target Start/End: Original strand, 35428347 - 35428475
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaa---ctaagttcaatatatagccttggtcttcttattgct 187  Q
    ||||| ||||||||||||||||||||||||| ||| | |||||||||||||||||||||||   ||| ||||||||||||||||||||||||  ||||||    
T  35428347 ttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaattactaggttcaatatatagccttggtcttcccattgct 35428446  T
Q  188 tcactaaactaagcgatgtgggacataat 216  Q
    |||||||| |||||||| |||||||||||    
T  35428447 tcactaaaataagcgatttgggacataat 35428475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 91 - 216
Target Start/End: Original strand, 35429930 - 35430055
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 190  Q
    ||||| ||||||||||||||||||||||||| ||| | |||||| ||||||||||||||||||| ||||||||||||| ||||||||||   ||||||||    
T  35429930 ttaaactaagtcagatataagcttaaagtgctactgactggtgcttctaaaaacaaagaaactaggttcaatatatagtcttggtcttccccttgcttca 35430029  T
Q  191 ctaaactaagcgatgtgggacataat 216  Q
    ||||| |||||||||| |||||||||    
T  35430030 ctaaaataagcgatgtcggacataat 35430055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 91 - 216
Target Start/End: Original strand, 7400492 - 7400617
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 190  Q
    ||||| ||||||||||||||||||||||||| ||| |  ||||||||||||||||||||| ||| ||||||||||||| ||||||||||   ||||| ||    
T  7400492 ttaaactaagtcagatataagcttaaagtgctactgaccggtgcatctaaaaacaaagaacctaggttcaatatatagtcttggtcttccccttgctcca 7400591  T
Q  191 ctaaactaagcgatgtgggacataat 216  Q
    |||||||||||||||| |||||||||    
T  7400592 ctaaactaagcgatgtcggacataat 7400617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 35428215 - 35428285
Alignment:
Q  14 gaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 84  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35428215 gaggaaaaaccacgaccgttgtctaaaccgacaaccagagaattattactatgtgaaaattgttacaacac 35428285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 41341273 - 41341197
Alignment:
Q  8 aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 84  Q
    ||||| |||||||||||| ||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  41341273 aaaccagaggaaaaaccatgaccgttgtctaaaccgacaaccaaagaattattactatgtgaaaattgttacaacac 41341197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 91 - 211
Target Start/End: Complemental strand, 7659070 - 7658948
Alignment:
Q  91 ttaaattaagtcagatata--agcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgctt 188  Q
    ||||| |||||||||||||  |||||||||||| ||| | |||| ||||| ||||||||||| |||| ||||||||||||| ||||||||| | |||||     
T  7659070 ttaaactaagtcagatatataagcttaaagtgctactaactggtacatctgaaaacaaagaacctaaattcaatatatagcattggtcttcgtcttgctc 7658971  T
Q  189 cactaaactaagcgatgtgggac 211  Q
    ||| | |||||||||||| ||||    
T  7658970 caccacactaagcgatgtaggac 7658948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 35429798 - 35429868
Alignment:
Q  14 gaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 84  Q
    |||||||||||||||| ||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  35429798 gaggaaaaaccacgaccgttatctaaaccgacaaccagagaattattactatttgaaaattattacaacac 35429868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 216
Target Start/End: Complemental strand, 13661774 - 13661689
Alignment:
Q  131 gtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttcactaaactaagcgatgtgggacataat 216  Q
    |||||||| | ||||||||| | |||||||||||||| | |||||||||   |||||||||||||||||||||||||| |||||||    
T  13661774 gtgcatctgataacaaagaaccaaagttcaatatataacattggtcttccccttgcttcactaaactaagcgatgtggaacataat 13661689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 18009373 - 18009205
Alignment:
Q  13 ggaggaaaaaccacgacggttgtct--aaaccgacaaccagagtattattactatgtgaaa-attgttacaacacgtatacttaaattaagtcagatata 109  Q
    |||| |||||||||||  |||||||  |||||||||||||||  ||||||||||||||||| | | | ||||     ||| ||||| ||||||| |||||    
T  18009373 ggagaaaaaaccacgagcgttgtctctaaaccgacaaccagataattattactatgtgaaacactttcacaaagaaaatatttaaactaagtcaaatata 18009274  T
Q  110 agcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtctt 178  Q
    || ||||||||| ||| | |||||||| ||||||||| ||| ||| || ||||||||| ||||| ||||    
T  18009273 agtttaaagtgctactgactggtgcatttaaaaacaacgaatctaggtccaatatataaccttgatctt 18009205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 30921521 - 30921581
Alignment:
Q  24 cacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 84  Q
    |||||| ||||| |||||||||||| |||| ||||||||||||||||| || || ||||||    
T  30921521 cacgaccgttgtttaaaccgacaacaagagaattattactatgtgaaattttttccaacac 30921581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 38183136 - 38183247
Alignment:
Q  97 taagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttcactaaac 196  Q
    ||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||  |||||||||||||||||||||||   ||||||||||||||    
T  38183136 taagtcagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactagattcaatatatagccttggtcttcaccttgcttcactaaac 38183235  T
Q  197 taagcgatgtgg 208  Q
    ||||||||||||    
T  38183236 taagcgatgtgg 38183247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 199
Target Start/End: Original strand, 17731091 - 17731199
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 190  Q
    ||||| ||||||||||||||||||||||||| ||| | |||||||||||| || |||||||||| ||||||||||||||||||| ||||   ||||||||    
T  17731091 ttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaacaataaagaaactaggttcaatatatagccttggccttccccttgcttca 17731190  T
Q  191 ctaaactaa 199  Q
    |||||||||    
T  17731191 ctaaactaa 17731199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 199
Target Start/End: Original strand, 19032322 - 19032430
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 190  Q
    ||||| ||||||||||||||||||||||||| ||| | |||||||||||| || |||||||||| ||||||||||||||||||| ||||   ||||||||    
T  19032322 ttaaactaagtcagatataagcttaaagtgctactgactggtgcatctaacaataaagaaactaggttcaatatatagccttggccttccccttgcttca 19032421  T
Q  191 ctaaactaa 199  Q
    |||||||||    
T  19032422 ctaaactaa 19032430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 17730951 - 17731028
Alignment:
Q  8 aaaccggaggaaaa-accacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 84  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||| |||||    
T  17730951 aaaccggaggaaaaaaccacgaccgttgtctaaaccgacaaccagagaattattactatgtgaaattttttagaacac 17731028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 19032182 - 19032259
Alignment:
Q  8 aaaccggaggaaaa-accacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 84  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||| |||||    
T  19032182 aaaccggaggaaaaaaccacgaccgttgtctaaaccgacaaccagagaattattactatgtgaaattttttagaacac 19032259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 1026883 - 1026785
Alignment:
Q  102 cagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttcactaaactaag 200  Q
    |||||||||||||| ||| | | | | |||||||||||||||||||||| ||| |||| ||||||||||||||| |||   ||||||||||||||||||    
T  1026883 cagatataagcttatagtactattgactggtgcatctaaaaacaaagaacctacgttcgatatatagccttggtattccccttgcttcactaaactaag 1026785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 99 - 207
Target Start/End: Original strand, 21344714 - 21344826
Alignment:
Q  99 agtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatat----atagccttggtcttcttattgcttcactaa 194  Q
    |||||||||||  |||||||||| ||| ||||||||||||||||||||| || ||| |||||||||    ||||| ||||||||| | ||| ||||| ||    
T  21344714 agtcagatatacacttaaagtgctactgattggtgcatctaaaaacaaataacctaggttcaatatatagatagcattggtcttcctcttgattcaccaa 21344813  T
Q  195 actaagcgatgtg 207  Q
    ||||||| |||||    
T  21344814 actaagcaatgtg 21344826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 40195767 - 40195693
Alignment:
Q  8 aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaac 82  Q
    ||||| ||| |||||||||||  ||||||||||||||||||||||| ||||||||||||| ||| || |||||||    
T  40195767 aaaccagagaaaaaaccacgatcgttgtctaaaccgacaaccagagaattattactatgtaaaattttttacaac 40195693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 43979453 - 43979392
Alignment:
Q  8 aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtga 69  Q
    |||| |||| |||||||||||| ||| ||||||||||||||||||| |||||||||||||||    
T  43979453 aaactggagaaaaaaccacgaccgttatctaaaccgacaaccagagaattattactatgtga 43979392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 3371462 - 3371390
Alignment:
Q  132 tgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttcactaaactaagcgat 204  Q
    ||||||||||||||| ||| ||| ||| ||||||||||||||||||||   ||||||||| ||||||||||||    
T  3371462 tgcatctaaaaacaaggaacctaggtttaatatatagccttggtcttccctttgcttcaccaaactaagcgat 3371390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 3371647 - 3371585
Alignment:
Q  8 aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaa 70  Q
    ||||||||| ||||||||| |  ||||||| ||||||||||||||| ||||||||||||||||    
T  3371647 aaaccggagaaaaaaccactatcgttgtcttaaccgacaaccagagaattattactatgtgaa 3371585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 3372525 - 3372473
Alignment:
Q  19 aaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaa 71  Q
    ||||||||||  ||||||||||||||||| ||||| |||||||||||||||||    
T  3372525 aaaaccacgatcgttgtctaaaccgacaatcagagaattattactatgtgaaa 3372473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 1027033 - 1026957
Alignment:
Q  8 aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 84  Q
    ||||| ||| |||||||||||| | |||||||||||||||||||||  |||||| || || |||| | |||||||||    
T  1027033 aaaccagagaaaaaaccacgaccgctgtctaaaccgacaaccagagagttattagtacgtaaaaaattttacaacac 1026957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 91 - 216
Target Start/End: Original strand, 5448886 - 5449011
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 190  Q
    ||||| ||||| ||||||||||||||||||| ||| | |||||||||||||||||||||||||| |||||||||||||| ||||| |||   ||||||||    
T  5448886 ttaaactaagttagatataagcttaaagtgctactgactggtgcatctaaaaacaaagaaactaggttcaatatatagcattggtattccccttgcttca 5448985  T
Q  191 ctaaactaagcgatgtgggacataat 216  Q
    |||||||||||||||||| |||||||    
T  5448986 ctaaactaagcgatgtggaacataat 5449011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 103 - 216
Target Start/End: Original strand, 5439888 - 5440001
Alignment:
Q  103 agatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttcactaaactaagcg 202  Q
    ||||||||||||||||||| ||| | ||||||||||||||||||| |||||| |||||||||||||| ||||| |||   ||||||||||||||||||||    
T  5439888 agatataagcttaaagtgctactgactggtgcatctaaaaacaaataaactaggttcaatatatagcattggtattccccttgcttcactaaactaagcg 5439987  T
Q  203 atgtgggacataat 216  Q
    |||||| |||||||    
T  5439988 atgtggaacataat 5440001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 91 - 211
Target Start/End: Original strand, 15588679 - 15588799
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 190  Q
    ||||| ||||||| |||||||||||| |||| ||| |  |||||||||||||||||||||  ||   |||||||||||||||||||||| | ||||||||    
T  15588679 ttaaactaagtcaaatataagcttaacgtgctactgacaggtgcatctaaaaacaaagaacgtaccatcaatatatagccttggtcttcctcttgcttca 15588778  T
Q  191 ctaaactaagcgatgtgggac 211  Q
    | |||||||| ||||||||||    
T  15588779 ccaaactaagtgatgtgggac 15588799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 5438883 - 5438959
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatata 167  Q
    ||||| ||||| | ||||||||||||||||| | | | |||||||||||||||||||||||||| ||||||||||||    
T  5438883 ttaaactaagttatatataagcttaaagtgctattgactggtgcatctaaaaacaaagaaactatgttcaatatata 5438959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 5439738 - 5439814
Alignment:
Q  8 aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 84  Q
    |||||| || |||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||| || |||||||||    
T  5439738 aaaccgtagaaaaaaccatgaccgttgtctaaaccgacaaccagagaattatcactatgtgaaattttttacaacac 5439814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 5448748 - 5448824
Alignment:
Q  8 aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 84  Q
    |||||| || |||||||| ||| ||||||||||||||||||||||| ||||| ||||||||||| || |||||||||    
T  5448748 aaaccgtagaaaaaaccatgaccgttgtctaaaccgacaaccagagaattatcactatgtgaaattttttacaacac 5448824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 97 - 200
Target Start/End: Original strand, 15589819 - 15589922
Alignment:
Q  97 taagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttcactaaac 196  Q
    ||||| |||||||||||||| |||| ||| |   ||||||||||| |||||||| |||  |||||||||||||||||||||||   ||||||||| ||||    
T  15589819 taagtaagatataagcttaatgtgctactgacctgtgcatctaaatacaaagaacctagattcaatatatagccttggtcttccccttgcttcaccaaac 15589918  T
Q  197 taag 200  Q
    ||||    
T  15589919 taag 15589922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 5447893 - 5447969
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatata 167  Q
    ||||| ||||| | ||||||||||||||||| | | | |||||||||||| ||||||||||||| ||||||||||||    
T  5447893 ttaaactaagttatatataagcttaaagtgctattgactggtgcatctaagaacaaagaaactatgttcaatatata 5447969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 84
Target Start/End: Original strand, 5447753 - 5447829
Alignment:
Q  8 aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 84  Q
    ||||||||| |||||| || ||  |||||||||||||||||||||| ||||| ||||||||||  || |||||||||    
T  5447753 aaaccggagaaaaaactactaccattgtctaaaccgacaaccagagaattatcactatgtgaatttttttacaacac 5447829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 15589672 - 15589744
Alignment:
Q  8 aaaccggaggaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttaca 80  Q
    |||||| || |||| ||| ||| ||| ||||||||||||||||||| ||| ||||||||||||| || |||||    
T  15589672 aaaccgaagaaaaacccatgaccgttttctaaaccgacaaccagagaattgttactatgtgaaattttttaca 15589744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 5438767 - 5438819
Alignment:
Q  32 ttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 84  Q
    |||||||||||||||||||||| ||||| ||||| ||||  || |||||||||    
T  5438767 ttgtctaaaccgacaaccagagaattatcactatctgaatttttttacaacac 5438819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 91 - 216
Target Start/End: Complemental strand, 52022221 - 52022096
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 190  Q
    ||||| |||||||||||| |||||||||||| | | | |||||||||||||||||||||||||| ||||||||||||||||||||||||   || |||||    
T  52022221 ttaaactaagtcagatatgagcttaaagtgctaatgactggtgcatctaaaaacaaagaaactaggttcaatatatagccttggtcttccccttacttca 52022122  T
Q  191 ctaaactaagcgatgtgggacataat 216  Q
    ||||||||||| ||||||||||||||    
T  52022121 ctaaactaagcaatgtgggacataat 52022096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 91 - 216
Target Start/End: Complemental strand, 6139913 - 6139788
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 190  Q
    ||||| ||||| ||||||||||||||||||  | | |  ||||||||||||||||||||||||| ||||||||||||||||||||||||   ||||||||    
T  6139913 ttaaactaagttagatataagcttaaagtgttattgaccggtgcatctaaaaacaaagaaactatgttcaatatatagccttggtcttccccttgcttca 6139814  T
Q  191 ctaaactaagcgatgtgggacataat 216  Q
    |||||||||||| ||||| |||||||    
T  6139813 ctaaactaagcggtgtggaacataat 6139788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 91 - 177
Target Start/End: Complemental strand, 6138292 - 6138206
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtct 177  Q
    ||||| ||||||||||||||||||||||||| ||| | ||||||||| |||||||||||||||| ||||||||||||| ||||||||    
T  6138292 ttaaactaagtcagatataagcttaaagtgctactgactggtgcatcaaaaaacaaagaaactaggttcaatatatagtcttggtct 6138206  T

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Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 6138420 - 6138358
Alignment:
Q  18 aaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttaca 80  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6138420 aaaaaccacgaccgttgtctaaaccgacaaccagagaattattactatgtgaaaattgttaca 6138358  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 3742544 - 3742609
Alignment:
Q  18 aaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 84  Q
    |||||||||||| |||||||||||| ||||||| || ||||||||||||||||||||||||||||||    
T  3742544 aaaaaccacgaccgttgtctaaacc-acaaccaaagaattattactatgtgaaaattgttacaacac 3742609  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 5397436 - 5397354
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttc 179  Q
    ||||||||||| ||||||||||||||||||  ||      |||||||||||||||||||| ||| ||  ||||||||||||||||||||    
T  5397436 ttaaattaagttagatataagcttaaagtgttac------gtgcatctaaaaacaaagaacctaggtctaatatatagccttggtcttc 5397354  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 6140026 - 6139978
Alignment:
Q  33 tgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaa 81  Q
    |||||||| ||||||| | || |||||||||||||||||||||||||||    
T  6140026 tgtctaaatcgacaactaaagaattattactatgtgaaaattgttacaa 6139978  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 178
Target Start/End: Complemental strand, 43835045 - 43834965
Alignment:
Q  98 aagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtctt 178  Q
    ||||||||| |||| ||||||||| ||| | || ||||||| ||||| |||||  || ||||||||||||||||| |||||    
T  43835045 aagtcagatgtaagtttaaagtgctactgactgatgcatcttaaaactaagaacttaggttcaatatatagccttagtctt 43834965  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 52022354 - 52022287
Alignment:
Q  17 gaaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 84  Q
    ||||||||| |||  |||||||||||||||||||||  ||||||| |||||||||  | |||||||||    
T  52022354 gaaaaaccatgaccattgtctaaaccgacaaccagaaaattattattatgtgaaatcttttacaacac 52022287  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 2595366 - 2595414
Alignment:
Q  131 gtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttc 179  Q
    |||||||||||||||||||| ||||||  ||||||||| || |||||||    
T  2595366 gtgcatctaaaaacaaagaacctaagtctaatatatagtctaggtcttc 2595414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 207
Target Start/End: Original strand, 4660133 - 4660248
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 190  Q
    ||||| |||||||||||||| |||||||||| ||| |  |||||||| |||||||||||||||| |||||||||||||| |||||||||   ||||||||    
T  4660133 ttaaactaagtcagatataatcttaaagtgctactgaccggtgcatc-aaaaacaaagaaactaggttcaatatatagcattggtcttccccttgcttca 4660231  T
Q  191 ctaaactaagcgatgtg 207  Q
    | |||||||||||||||    
T  4660232 ccaaactaagcgatgtg 4660248  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 20594714 - 20594608
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 190  Q
    ||||| || |||||||||||||||| ||||  | | |  |||||||||||||| |||||| ||| ||||||||||||| ||||||||||   ||||||||    
T  20594714 ttaaactatgtcagatataagcttagagtgttattgaccggtgcatctaaaaataaagaacctaggttcaatatatagtcttggtcttccccttgcttca 20594615  T
Q  191 ctaaact 197  Q
    | |||||    
T  20594614 ccaaact 20594608  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 33301075 - 33301125
Alignment:
Q  129 tggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttc 179  Q
    |||| |||||||||||||||||  | |||||||||||||||||||||||||    
T  33301075 tggtacatctaaaaacaaagaacatgagttcaatatatagccttggtcttc 33301125  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 31073577 - 31073629
Alignment:
Q  18 aaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaa 70  Q
    |||||| ||||  |||||||||||||||||||||||  |||||||||||||||    
T  31073577 aaaaacaacgatcgttgtctaaaccgacaaccagagagttattactatgtgaa 31073629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 200
Target Start/End: Complemental strand, 31322671 - 31322562
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 190  Q
    ||||| ||||||||||||||||||||||||||| | | |||||||||||||||||||||| ||| || ||||||||| ||||||||||| | || |||||    
T  31322671 ttaaactaagtcagatataagcttaaagtgccattgaatggtgcatctaaaaacaaagaacctaggtccaatatataaccttggtcttcctcttacttca 31322572  T
Q  191 ctaaactaag 200  Q
    | | ||||||    
T  31322571 ccacactaag 31322562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 14508823 - 14508735
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttc 179  Q
    ||||| || |||||||||||||||||||||| ||| | |||| ||||||||||| ||||| ||| ||||||||||||||||||||||||    
T  14508823 ttaaactaggtcagatataagcttaaagtgctactgactggtacatctaaaaactaagaacctaggttcaatatatagccttggtcttc 14508735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 45676680 - 45676767
Alignment:
Q  129 tggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttcactaaactaagcgatgtgggacataat 216  Q
    |||||||||||||||||||||| ||| ||||||||||||| ||| | |||    |||||||||||||||||||||||| |||||||||    
T  45676680 tggtgcatctaaaaacaaagaacctaggttcaatatatagtcttagcctttcccttgcttcactaaactaagcgatgtaggacataat 45676767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 91 - 211
Target Start/End: Complemental strand, 31327298 - 31327178
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggtcttcttattgcttca 190  Q
    |||||||||||||||||||| |||||||||| ||||| ||||| || |||||| | |||| ||| ||| |||||||||| ||||||||    ||||||||    
T  31327298 ttaaattaagtcagatataaacttaaagtgctacttactggtgtatataaaaatagagaacctaggttgaatatatagcattggtctttcctttgcttca 31327199  T
Q  191 ctaaactaagcgatgtgggac 211  Q
    | | ||||||| ||| |||||    
T  31327198 ccacactaagcaatgcgggac 31327178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 10550049 - 10550115
Alignment:
Q  99 agtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatata 165  Q
    |||||||||||| |||||||||| ||| | |||||||||||||||||||||| ||| ||||||||||    
T  10550049 agtcagatataaacttaaagtgctactgactggtgcatctaaaaacaaagaacctaggttcaatata 10550115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 10549927 - 10549980
Alignment:
Q  18 aaaaaccacgacggttgtctaaaccgacaaccagagtattattactatgtgaaa 71  Q
    |||||||||||| |||||||| ||||||||| |||| |||||||||||||||||    
T  10549927 aaaaaccacgaccgttgtctataccgacaactagagaattattactatgtgaaa 10549980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 14508939 - 14508886
Alignment:
Q  31 gttgtctaaaccgacaaccagagtattattactatgtgaaaattgttacaacac 84  Q
    |||||||||||||||||||| || ||||||||||||||||  || |||||||||    
T  14508939 gttgtctaaaccgacaaccaaagaattattactatgtgaatttttttacaacac 14508886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 41848369 - 41848453
Alignment:
Q  91 ttaaattaagtcagatataagcttaaagtgccacttattggtgcatctaaaaacaaagaaactaagttcaatatatagccttggt 175  Q
    ||||| ||| ||||||||||||| ||| ||| ||| | || ||||||||||||||||||| | ||||  |||||||||| |||||    
T  41848369 ttaaactaaatcagatataagctaaaaatgctactgactgatgcatctaaaaacaaagaaccaaagtcgaatatatagcattggt 41848453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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