View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7576_low_4 (Length: 386)
Name: NF7576_low_4
Description: NF7576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7576_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 368
Target Start/End: Original strand, 10165325 - 10165682
Alignment:
| Q |
13 |
aatattcaccttaaaaatcgattttgcaagattaagttagatccgaccaaaatcctaacatttgtatcaaagtttatggatttaggacaagctttataag |
112 |
Q |
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| T |
10165325 |
aatattcaccttaaaaattgattttgcaagattaagttagatccgaccaaaatcctaacatttgtattagagtttatggatttaggacaagctttataag |
10165424 |
T |
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| Q |
113 |
cattgcataaacc--atattcgtataatgtgagatcaaattcatccattcacacctaatacaaagaagatgttggcgttgcaatgaaggccaaccctaat |
210 |
Q |
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| T |
10165425 |
cattgcataaaccatatattcgtataatttgagagcaaattcacccattcacacc-aatacaaagaagatgttggcgttgcaatgaaggccaaccctaat |
10165523 |
T |
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| Q |
211 |
cgcacaattaggaggctgcgagttgaccgcaatgaagttgagattttcacacataacacaaagaagatgttgggg-ttgcaatgaaggtcaaccctaatg |
309 |
Q |
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| T |
10165524 |
gccacaattaggagactgcgagttgacggcaatgaagttgagagtttcacacataacacaaagaagatgttggggtttgcaatgaaggccaaccctaatg |
10165623 |
T |
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| Q |
310 |
ccacaattaggcggctatgagttgactgcagtgaagttaaaattttcaacgcaccccct |
368 |
Q |
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| T |
10165624 |
ccacaattaagtggctacgagttgactgcagtgaagttaaaattttcaacgcaccccct |
10165682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 323
Target Start/End: Complemental strand, 41387518 - 41387459
Alignment:
| Q |
264 |
taacacaaagaagatgttgg-ggttgcaatgaaggtcaaccctaatgccacaattaggcgg |
323 |
Q |
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| T |
41387518 |
taacacaatgaaggtgttggaggttgcaatgaagg-caacccaaatgtcacaattaggcgg |
41387459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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