View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_1D_high_10 (Length: 256)
Name: NF7577_1D_high_10
Description: NF7577_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_1D_high_10 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 24491683 - 24491863
Alignment:
| Q |
1 |
agatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaata |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24491683 |
agatgagagttaatctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacaacaaata |
24491782 |
T |
|
| Q |
101 |
tgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24491783 |
tgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
24491863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 24495241 - 24495421
Alignment:
| Q |
1 |
agatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaata |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24495241 |
agatgagagttaatctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacaacaaata |
24495340 |
T |
|
| Q |
101 |
tgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
181 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24495341 |
tgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
24495421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 5 - 133
Target Start/End: Original strand, 2810243 - 2810371
Alignment:
| Q |
5 |
gagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaatatgtt |
104 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
2810243 |
gagagttattctgtgattaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctctaggaagcaattattaggacaacaaatatgtt |
2810342 |
T |
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| Q |
105 |
tctatatattgtgccaatataccttgtga |
133 |
Q |
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|||||||||||| |||||||||||||||| |
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| T |
2810343 |
tctatatattgtaccaatataccttgtga |
2810371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 24358996 - 24359176
Alignment:
| Q |
1 |
agatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaata |
100 |
Q |
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|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24358996 |
agatgagagttaatctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacaacaaata |
24359095 |
T |
|
| Q |
101 |
tgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
181 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24359096 |
tgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
24359176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 34899931 - 34899975
Alignment:
| Q |
210 |
atgcatataggtaaagtttggtaatttcaactttcaagttgagat |
254 |
Q |
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| T |
34899931 |
atgcatataggtaaagtttggtagtttcaactttcaagttgagat |
34899975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 86742 - 86922
Alignment:
| Q |
1 |
agatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaata |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
86742 |
agatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaata |
86841 |
T |
|
| Q |
101 |
tgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttatac |
182 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
86842 |
tgtttctatatattgtgccaaaataccttgtgaatgatatagc-aaaaatcattattccttatatatcattattccttatac |
86922 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 18556752 - 18556573
Alignment:
| Q |
1 |
agatgagagttattctgtgatcaagaaataatatcacactgtaattgattagagaaagtcaaaccatagctgtaggaagcaattattaggacagcaaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18556752 |
agatgagagttattctgtgatcaagaaataatatcacactataattgactagagaaagtcaaaccatagctggaggaagcaattattaggacagcaaata |
18556653 |
T |
|
| Q |
101 |
tgtttctatatattgtgccaatataccttgtgaatgatatagcaaaaaatcattattccttacatatcattattccttata |
181 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
18556652 |
tgtttctatatattgtaccaatataccttgtgaatgatatagca-aaaatcattattccatacatatcattattccttata |
18556573 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 22684888 - 22684924
Alignment:
| Q |
182 |
cttacagttgtccaaattgctatctgtgatgcatata |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
22684888 |
cttacagttgtccaaattgctatctgtgatgcatata |
22684924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 22697011 - 22697047
Alignment:
| Q |
182 |
cttacagttgtccaaattgctatctgtgatgcatata |
218 |
Q |
| |
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||||||||||||||| ||||||||| ||||||||||| |
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| T |
22697011 |
cttacagttgtccaagttgctatctttgatgcatata |
22697047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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