View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_1D_low_1 (Length: 705)
Name: NF7577_1D_low_1
Description: NF7577_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_1D_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 616; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 1 - 652
Target Start/End: Complemental strand, 23333246 - 23332595
Alignment:
| Q |
1 |
tgcgtggaaaatagatgtttgttcttctctattttgctggccacatgttgttttgaatattaggcgatggttttaatttggctacttttggaatgtaatg |
100 |
Q |
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| T |
23333246 |
tgcgtggaaaatagatgtttgttcttctctattttgctggccacatgttgttttgaatattaggcgatggttttaatttggctacttttggaaagtaatg |
23333147 |
T |
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| Q |
101 |
ctacgaagacttatttgtttcttggtgcattttctgaaagttatacaatacttacgctgatatttcttggttgtcaagttaggatcaagactgtcaatta |
200 |
Q |
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| T |
23333146 |
ctatgaagacttatttgtttcttggtgcattttctgaaagttatacaatacttacgctgatatttcttggttgtcaagttaggatcaagactgtcaatta |
23333047 |
T |
|
| Q |
201 |
tcattcatgctatgtagttagtcggttcattagtgggcattgcactgttttggtatgttgattggaactaaccgtgtcatgtgtttgatgtgttggtcag |
300 |
Q |
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| T |
23333046 |
tcattcatgctatgtagttagtcggttcatttgtgggcattgcactgttttggtatgttgattggaactaaccgtgtcatgtgtttgatgtgttggtcag |
23332947 |
T |
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| Q |
301 |
ccgaagacaaggttgccatcgtgtttcgccaaggaatatggtgtgcatgttgatgattatgtcatgttgcgtgatccaaacagaaacatgttcgaggtca |
400 |
Q |
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| T |
23332946 |
ccgaagacaaggttgccatcgtgtttcgccaaggaatatggtttgcatgttgatgattatgtcatgttgcgtgatccaaacagaaacatgttcaaggtca |
23332847 |
T |
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| Q |
401 |
aggtccacgtgaaaaatggcaaggtctatctgcgggatggttgggctgagctgaagggtttctataaggtagatcgtggtgcgtgggtcaccctgactta |
500 |
Q |
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| T |
23332846 |
aggtccacgtgaaaaatggcaaggtttatctgcgggatggttgggctgagctgaagggtttctataaggtagatcgtggtgcgtgggtcaccctgacgta |
23332747 |
T |
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| Q |
501 |
tgtacagccgaatcttctagatatgactatcgcagagagatcaggagtcgaaatcaactatcctaacaaatttcttcctcccatgtcgaaaatgattgtc |
600 |
Q |
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| T |
23332746 |
tgtacagccgaatcttctagatatgactatcgcagagagatcaggagtcgaaatcaactatcctaacaaatttcttcctcccatgtcgaaaatgattgtc |
23332647 |
T |
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| Q |
601 |
caacgtgagggtggatcggtcatgcgcttctatcgctcattcgtccacatat |
652 |
Q |
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| T |
23332646 |
ccacgtgagggtggatcggtcatgcgcttctatcgctcattcgtccatatat |
23332595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 331 - 425
Target Start/End: Original strand, 10955074 - 10955166
Alignment:
| Q |
331 |
aaggaatatggtgtgcatgttgatgattatgtcatgttgcgtgatccaaacagaaacatgttcgaggtcaaggtccacgtgaaaaatggcaaggt |
425 |
Q |
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| T |
10955074 |
aaggaatatggtttgcacgttgatgactatgtcat--tgcgtgatcctaacaagaacatgttcgaggttaaggtccacaagaagaagggcaaggt |
10955166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 647 - 689
Target Start/End: Complemental strand, 23322373 - 23322331
Alignment:
| Q |
647 |
acatatgcgtttggattttacaacgattgtgtttggtgatgtc |
689 |
Q |
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| T |
23322373 |
acatatgcgtttggagtttacaacgtttgtgtttggtgatgtc |
23322331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 647 - 689
Target Start/End: Complemental strand, 23332540 - 23332498
Alignment:
| Q |
647 |
acatatgcgtttggattttacaacgattgtgtttggtgatgtc |
689 |
Q |
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| T |
23332540 |
acatatgcgtttggagtttacaacgtttgtgtttggtgatgtc |
23332498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 358 - 425
Target Start/End: Complemental strand, 2027759 - 2027692
Alignment:
| Q |
358 |
tatgtcatgttgcgtgatccaaacagaaacatgttcgaggtcaaggtccacgtgaaaaatggcaaggt |
425 |
Q |
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| T |
2027759 |
tatgtcattttgcgtgatccaaacaagaacatgtttgaggttaaagttcacaagaaaaatggcaaggt |
2027692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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