View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_1D_low_13 (Length: 329)
Name: NF7577_1D_low_13
Description: NF7577_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_1D_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 37444331 - 37444077
Alignment:
| Q |
19 |
gacttcaagattgttgtgcttttttgttgtttttcaatggaaattattaatgctttatattttggtctgagagtgtgaggaacatttttaatattagcag |
118 |
Q |
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| T |
37444331 |
gacttcaagattgttgtgcttttttgttgtttttcaatggaaattattaatgctttatattttggtctgagagtgtgaggaacatttttaatattagcag |
37444232 |
T |
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| Q |
119 |
cgagggtttgacaaattacttgtttaaaaacattgacttagctagggtaactgttgttaaaaggaggattgagtgagcgatggtgcaaaagagagggtag |
218 |
Q |
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| T |
37444231 |
tgagggtttgacaaattacttgtttaaaaacattgacttagctagggtaactgttgttaaaaggaggattgagtgagcgatggtgcaaaagagagggtag |
37444132 |
T |
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| Q |
219 |
agtgagtgaaaccaattttgaaccaaaattataagctatttttggaaagcttact |
273 |
Q |
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| T |
37444131 |
agtgagtgaaaccaattttgaaccaaaattataagctatttttggaaagcttact |
37444077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 148 - 301
Target Start/End: Original strand, 7492522 - 7492676
Alignment:
| Q |
148 |
acattgacttagctagggtaactgttgttaaaaggaggattgagtgagcgatggtgcaaaagagagggtagagtgagtgaaaccaattttgaaccaaaat |
247 |
Q |
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| T |
7492522 |
acattgacttggctaagatagctgttgttaaaaggaggattgagtgagcaatggtgcaaaagagaggata----gaatgaaaccaattttgaacctaaat |
7492617 |
T |
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| Q |
248 |
tataagcta-----tttttggaaagcttactgaaataagtagaaaatgtatcaatatgt |
301 |
Q |
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| T |
7492618 |
tataggctagtagtattttggaaagcttattgaattaagtagaaaaattatcaatatgt |
7492676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 291 - 329
Target Start/End: Complemental strand, 37444077 - 37444039
Alignment:
| Q |
291 |
tatcaatatgtgtgtatttgaacactaaaaagcgcttat |
329 |
Q |
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| T |
37444077 |
tatcaatatgtgtgtatttgaacactaaaaagcgcttat |
37444039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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