View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7577_1D_low_15 (Length: 324)

Name: NF7577_1D_low_15
Description: NF7577_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7577_1D_low_15
NF7577_1D_low_15
[»] chr7 (6 HSPs)
chr7 (112-324)||(47543398-47543610)
chr7 (112-229)||(4609652-4609769)
chr7 (112-267)||(10315043-10315198)
chr7 (112-267)||(31030341-31030496)
chr7 (120-238)||(17116404-17116522)
chr7 (139-236)||(38153904-38154001)
[»] chr1 (17 HSPs)
chr1 (115-324)||(32160044-32160252)
chr1 (110-276)||(15259370-15259536)
chr1 (157-258)||(26260768-26260869)
chr1 (139-243)||(27568382-27568486)
chr1 (139-269)||(27363725-27363855)
chr1 (142-251)||(44675097-44675206)
chr1 (115-209)||(38133069-38133163)
chr1 (174-216)||(9484879-9484921)
chr1 (291-324)||(1951920-1951953)
chr1 (134-238)||(12688172-12688276)
chr1 (148-216)||(25392345-25392413)
chr1 (142-232)||(4889452-4889542)
chr1 (152-226)||(27264588-27264662)
chr1 (139-232)||(6723718-6723811)
chr1 (139-192)||(10686232-10686285)
chr1 (133-238)||(48973644-48973749)
chr1 (199-263)||(36098596-36098660)
[»] chr6 (10 HSPs)
chr6 (112-324)||(32196732-32196944)
chr6 (112-271)||(7824105-7824264)
chr6 (115-237)||(11324442-11324564)
chr6 (109-242)||(17292763-17292896)
chr6 (139-258)||(18673363-18673482)
chr6 (154-212)||(9200938-9200996)
chr6 (139-258)||(5667346-5667465)
chr6 (120-238)||(34714895-34715013)
chr6 (139-232)||(2682761-2682854)
chr6 (143-216)||(7155422-7155495)
[»] chr3 (10 HSPs)
chr3 (112-324)||(4740971-4741180)
chr3 (140-237)||(14788867-14788964)
chr3 (112-276)||(13043321-13043485)
chr3 (112-276)||(13051398-13051562)
chr3 (139-251)||(20017410-20017522)
chr3 (142-258)||(47160990-47161106)
chr3 (139-251)||(6894192-6894304)
chr3 (139-232)||(25845647-25845740)
chr3 (178-211)||(33388601-33388634)
chr3 (186-238)||(6925997-6926049)
[»] chr5 (13 HSPs)
chr5 (174-324)||(16610602-16610752)
chr5 (112-277)||(31706387-31706552)
chr5 (144-271)||(29651767-29651894)
chr5 (112-264)||(704490-704642)
chr5 (112-212)||(30722538-30722638)
chr5 (112-264)||(27482646-27482798)
chr5 (167-257)||(29994645-29994735)
chr5 (139-183)||(22922506-22922550)
chr5 (151-257)||(18967864-18967970)
chr5 (139-188)||(22924159-22924208)
chr5 (139-263)||(19314979-19315103)
chr5 (186-238)||(21041995-21042047)
chr5 (151-183)||(22923149-22923181)
[»] chr2 (14 HSPs)
chr2 (178-324)||(8090506-8090652)
chr2 (112-276)||(40638766-40638930)
chr2 (142-257)||(31640241-31640356)
chr2 (112-276)||(20948080-20948244)
chr2 (139-236)||(27708189-27708286)
chr2 (19-68)||(43451281-43451330)
chr2 (139-237)||(44735977-44736075)
chr2 (142-238)||(27009200-27009296)
chr2 (196-269)||(9420722-9420795)
chr2 (145-258)||(45131107-45131220)
chr2 (142-229)||(9840768-9840855)
chr2 (143-245)||(33645830-33645932)
chr2 (151-216)||(21563423-21563488)
chr2 (142-263)||(30505717-30505838)
[»] chr4 (10 HSPs)
chr4 (121-257)||(52577965-52578101)
chr4 (133-232)||(9831377-9831476)
chr4 (112-232)||(30972395-30972515)
chr4 (139-238)||(22653286-22653385)
chr4 (139-232)||(11131194-11131287)
chr4 (186-258)||(19846574-19846646)
chr4 (148-232)||(43001717-43001801)
chr4 (139-229)||(8830949-8831039)
chr4 (142-239)||(25130441-25130538)
chr4 (148-216)||(48336968-48337036)
[»] chr8 (7 HSPs)
chr8 (139-238)||(8462514-8462613)
chr8 (151-216)||(5751992-5752057)
chr8 (148-238)||(33282823-33282913)
chr8 (110-208)||(39435484-39435582)
chr8 (139-232)||(37929106-37929199)
chr8 (172-232)||(33191210-33191270)
chr8 (198-258)||(38738483-38738543)
[»] scaffold0204 (1 HSPs)
scaffold0204 (148-216)||(24490-24558)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 112 - 324
Target Start/End: Original strand, 47543398 - 47543610
Alignment:
Q  112 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 211  Q
    |||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  47543398 tttaatgtcaaagattgttcggttatccaggtggtcgacaagattaagtcgcttgcttttacgtggttgaagacgaagtttagttctcttcccttcaatt 47543497  T
Q  212 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagttaggcaacttttgtatatat 311  Q
    |||||  ||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  47543498 atcatgggtgatggcttagtccgtttaccattttaggcattggctaagagtttcttttctgctttttgtttatgatctgttaggcaacttttgtatatat 47543597  T
Q  312 tgttcttgactct 324  Q
    |||||||||||||    
T  47543598 tgttcttgactct 47543610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 112 - 229
Target Start/End: Complemental strand, 4609769 - 4609652
Alignment:
Q  112 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 211  Q
    |||||| ||||||| ||| | ||||  |||||||||||||||||||| | |||||||| ||||||||||||| |||||| | ||||||||||| ||||||    
T  4609769 tttaatatcaaagaatgctctgttaatcaggtggtcgataagattaaattgcttgcttatacgtggttgaaggcgaagtatatttctcttcccctcaatt 4609670  T
Q  212 atcatcagtggtggctta 229  Q
    | |||  |||||||||||    
T  4609669 accatgggtggtggctta 4609652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 112 - 267
Target Start/End: Original strand, 10315043 - 10315198
Alignment:
Q  112 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 211  Q
    |||||||||||||| ||| ||||||  |||||||| || ||||||||||||||||| ||||| |||||||||  ||||| |   ||||||||| ||||||    
T  10315043 tttaatgtcaaagaatgctcggttaatcaggtggtagacaagattaagtcgcttgcctttacatggttgaaggtgaagtattcctctcttcccctcaatt 10315142  T
Q  212 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttctt 267  Q
    | ||   |||||||||||| | |||||  ||||| ||||| ||||||| |||||||    
T  10315143 accacgggtggtggcttagcccgtttactattttgggcataggctaagtgtttctt 10315198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 112 - 267
Target Start/End: Complemental strand, 31030496 - 31030341
Alignment:
Q  112 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 211  Q
    |||||||||||||| ||| ||||||  |||||||| || ||||||||||||||||| |||||||||||||||  ||||| |   ||||||||| ||||||    
T  31030496 tttaatgtcaaagaatgctcggttaatcaggtggtagacaagattaagtcgcttgcctttacgtggttgaaggtgaagtattcctctcttcccctcaatt 31030397  T
Q  212 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttctt 267  Q
    | ||   |||||||||||  | |||||  ||||| ||||| ||||||| |||||||    
T  31030396 accacgggtggtggcttaacccgtttactattttgggcataggctaagtgtttctt 31030341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 120 - 238
Target Start/End: Complemental strand, 17116522 - 17116404
Alignment:
Q  120 caaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcag 219  Q
    |||||||||| |||| || || ||||| |||||||||||||| || || |||| |||||||||| |||| | || |||||||||||||| |||||||       
T  17116522 caaagattgctcggtaatacaagtggttgataagattaagtcactcgcatttatgtggttgaaggcgaaatatgcttctcttcccttcagttatcatggt 17116423  T
Q  220 tggtggcttagtctgttta 238  Q
    |||||||||||||||||||    
T  17116422 tggtggcttagtctgttta 17116404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 38153904 - 38154001
Alignment:
Q  139 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtt 236  Q
    ||||||||||||| ||||||||| || ||||||| ||||||||||  ||| |||  | |||||||||| || || |||   |||||||||||||||||    
T  38153904 caggtggtcgataggattaagtctctcgcttttaggtggttgaaggtgaaatttcctactcttccctttaactaccatagatggtggcttagtctgtt 38154001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 115 - 324
Target Start/End: Original strand, 32160044 - 32160252
Alignment:
Q  115 aatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatc 214  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| |    
T  32160044 aatgtcaaagattgctcggttatccaggtgatcgataagattaagtcgcttgcttttacgtggttgaggacgaagtttatttctctttccttcaattacc 32160143  T
Q  215 atcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagttaggcaacttttgtatatattgt 314  Q
    ||  |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||  ||||| ||||||||||||||||||    
T  32160144 attggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctg-tttttgtttatgatctcttaggtaacttttgtatatattgt 32160242  T
Q  315 tcttgactct 324  Q
    ||||||||||    
T  32160243 tcttgactct 32160252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 110 - 276
Target Start/End: Original strand, 15259370 - 15259536
Alignment:
Q  110 tatttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaa 209  Q
    |||||||||||||| | ||  ||||||  ||||||||||| |||||||| |||||||||||||||||||||||| |||||| | ||||||||||| ||||    
T  15259370 tatttaatgtcaaataatgttcggttaatcaggtggtcgacaagattaaatcgcttgcttttacgtggttgaaggcgaagtatatttctcttcccctcaa 15259469  T
Q  210 ttatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgtttt 276  Q
    ||| |||  ||||| |||||||| ||||| |||  | ||||| ||||||||||||||||||||||||    
T  15259470 ttaccatgggtggtagcttagtccgtttaccatactgggcataggctaagagtttcttttctgtttt 15259536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 157 - 258
Target Start/End: Original strand, 26260768 - 26260869
Alignment:
Q  157 aagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggct 256  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||  ||||||||||||||  |||| ||| || ||||||||||    
T  26260768 aagtctcttgcttttacgtggttgaaggcgaagtttgcttctcttcccttcaattatcatgggtggtggcttagtccatttaccatgttgggcattggct 26260867  T
Q  257 aa 258  Q
    ||    
T  26260868 aa 26260869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 139 - 243
Target Start/End: Original strand, 27568382 - 27568486
Alignment:
Q  139 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 238  Q
    |||||||| || | ||||||||| ||||||||||||||||||||| | || ||||||||||||||||||||||| |||  |||||||||||||||||||     
T  27568382 caggtggtagaaacgattaagtctcttgcttttacgtggttgaaggcaaaatttgtttctcttcccttcaattaccatgggtggtggcttagtctgtttg 27568481  T
Q  239 tcatt 243  Q
    |||||    
T  27568482 tcatt 27568486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 139 - 269
Target Start/End: Complemental strand, 27363855 - 27363725
Alignment:
Q  139 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 238  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||| ||||||    ||||||| || ||||||| |||  || ||||||||||| |||||    
T  27363855 caggtggtcgataagattaagtcgcttgccttttcgtggttgaaggcgaagtactcttctctttccctcaattaccatgggttgtggcttagtccgttta 27363756  T
Q  239 tcattttaggcattggctaagagtttctttt 269  Q
     |||||| ||||| |||||||  ||||||||    
T  27363755 ccattttgggcataggctaaggttttctttt 27363725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 44675097 - 44675206
Alignment:
Q  142 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatca 241  Q
    ||||| |||||||||||| | ||||| || | |||||||||| |||| |||| ||| ||||||||||||||||||   ||||||||||||| ||||||||    
T  44675097 gtggttgataagattaagccacttgcattcatgtggttgaaggcgaaatttgcttcccttcccttcaattatcatggttggtggcttagtccgtttatca 44675196  T
Q  242 ttttaggcat 251  Q
    | || |||||    
T  44675197 tgttgggcat 44675206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 38133163 - 38133069
Alignment:
Q  115 aatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaa 209  Q
    |||| ||||| |||| ||||||| |||||| | ||||| ||||||||  |||||| ||||||||||||| |||  ||||||| ||||||||||||    
T  38133163 aatgacaaagtttgctcggttattcaggtgatagataacattaagtcttttgcttatacgtggttgaaggcgagatttgtttttcttcccttcaa 38133069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 9484879 - 9484921
Alignment:
Q  174 gtggttgaagacgaagtttgtttctcttcccttcaattatcat 216  Q
    |||||||||| |||| |||||||||||||||||||||||||||    
T  9484879 gtggttgaaggcgaaatttgtttctcttcccttcaattatcat 9484921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 1951953 - 1951920
Alignment:
Q  291 ttaggcaacttttgtatatattgttcttgactct 324  Q
    ||||||||||||||||||||||||||||||||||    
T  1951953 ttaggcaacttttgtatatattgttcttgactct 1951920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 12688172 - 12688276
Alignment:
Q  134 ttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtct 233  Q
    |||| |||||||| ||||||||||||| |||  |||||| ||||||||||  |||||||    |||||||||| || ||||||   |||||||||||||     
T  12688172 ttatgcaggtggtggataagattaagttgctaacttttaagtggttgaaggtgaagtttccaactcttccctttaactatcatggatggtggcttagtcc 12688271  T
Q  234 gttta 238  Q
    |||||    
T  12688272 gttta 12688276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 25392413 - 25392345
Alignment:
Q  148 gataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 216  Q
    ||||||||||||||||| || | || |||||||||| ||||||||  || | |||||||||||||||||    
T  25392413 gataagattaagtcgctcgcatgtatgtggttgaaggcgaagttttcttattttcccttcaattatcat 25392345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 4889452 - 4889542
Alignment:
Q  142 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 232  Q
    ||||| ||||| |||||||||||||| || | |||||| ||| |||||||   |||||||||||| || ||||||  |||||| |||||||    
T  4889452 gtggttgataaaattaagtcgcttgcattcatgtggttcaaggcgaagttcccttctcttccctttaactatcatgggtggtgacttagtc 4889542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 27264588 - 27264662
Alignment:
Q  152 agattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggc 226  Q
    |||||||||||||||| ||| ||||||||||| ||||||    |||||||||| ||||||| |||  ||||||||    
T  27264588 agattaagtcgcttgccttttcgtggttgaaggcgaagtactcttctcttcccctcaattaccatgggtggtggc 27264662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 6723811 - 6723718
Alignment:
Q  139 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 232  Q
    ||||||||||| ||||||||||| ||  |||||| ||||||||||  |||||||  | ||| ||| ||||||| ||||   |||||||||||||    
T  6723811 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcctcctttcaattttcatggatggtggcttagtc 6723718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 10686285 - 10686232
Alignment:
Q  139 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagttt 192  Q
    |||||||| |||||||||||||| ||| | ||| ||||||||||| ||||||||    
T  10686285 caggtggtggataagattaagtcccttacatttgcgtggttgaaggcgaagttt 10686232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 238
Target Start/End: Original strand, 48973644 - 48973749
Alignment:
Q  133 gttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 232  Q
    ||||| |||||||| || || ||||||| | |  |||| | |||||| |||  |||||||||  |||||||||| |||||||||  ||||||||||||||    
T  48973644 gttatacaggtggtggacaaaattaagttgttgactttcaagtggttaaaggtgaagtttgtaactcttccctttaattatcatgggtggtggcttagtc 48973743  T
Q  233 tgttta 238  Q
     |||||    
T  48973744 cgttta 48973749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 36098660 - 36098596
Alignment:
Q  199 cttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtt 263  Q
    ||||||||||||||||||   ||||||||||||| ||| | ||| || ||||| |||||||||||    
T  36098660 cttcccttcaattatcatggctggtggcttagtccgttcaccatgttgggcataggctaagagtt 36098596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 112 - 324
Target Start/End: Complemental strand, 32196944 - 32196732
Alignment:
Q  112 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 211  Q
    |||||||||||||||||  |||||||||||||||||||  |||||||||||||| ||||||| ||||||||||||||||||  |||||||||||||||||    
T  32196944 tttaatgtcaaagattgttcggttatccaggtggtcgaccagattaagtcgcttacttttacatggttgaagacgaagtttagttctcttcccttcaatt 32196845  T
Q  212 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagttaggcaacttttgtatatat 311  Q
    | |||  ||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  32196844 aacatgggtgatggcttagtccgtttaccattttaggcattggctaagagtttcttttctgctttttgtttatgatctgttaggcaacttttgtatatat 32196745  T
Q  312 tgttcttgactct 324  Q
    |||||||||||||    
T  32196744 tgttcttgactct 32196732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 112 - 271
Target Start/End: Complemental strand, 7824264 - 7824105
Alignment:
Q  112 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 211  Q
    |||||||||||||| ||| ||||||  ||||||||||| ||||||||||||||||| ||||||||||||||| |||||| |   ||||||||| ||||||    
T  7824264 tttaatgtcaaagaatgctcggttaatcaggtggtcgacaagattaagtcgcttgcctttacgtggttgaaggcgaagtattcctctcttcccctcaatt 7824165  T
Q  212 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttct 271  Q
    | |||  |||||||||||| | ||| | |||||| ||||| ||||||| |||||||||||    
T  7824164 accatgggtggtggcttagcccgttcaccattttgggcataggctaagtgtttcttttct 7824105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 115 - 237
Target Start/End: Original strand, 11324442 - 11324564
Alignment:
Q  115 aatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatc 214  Q
    |||| ||||| |||| ||||| | ||| |||| || |||||||||| |||||||||||||||||||||| |||| |||| ||||||||||||||||||||    
T  11324442 aatgacaaagtttgctcggttcttcagatggtagacaagattaagttgcttgcttttacgtggttgaaggcgaaatttgcttctcttcccttcaattatc 11324541  T
Q  215 atcagtggtggcttagtctgttt 237  Q
    ||  |||||||||||||| ||||    
T  11324542 atgggtggtggcttagtccgttt 11324564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 109 - 242
Target Start/End: Complemental strand, 17292896 - 17292763
Alignment:
Q  109 gtatttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttca 208  Q
    |||||||||| |||||| ||  || |||| |||||||||  |||||||||||| || || || | |||||||||  | || |||| ||||||||||||||    
T  17292896 gtatttaatggcaaagaatgatcgattatgcaggtggtcattaagattaagtctctagcattcatgtggttgaacgccaaatttgcttctcttcccttca 17292797  T
Q  209 attatcatcagtggtggcttagtctgtttatcat 242  Q
    ||||||||   || |||||||||| |||||||||    
T  17292796 attatcatggttgatggcttagtccgtttatcat 17292763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 258
Target Start/End: Original strand, 18673363 - 18673482
Alignment:
Q  139 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 238  Q
    |||||||| ||||| |||||||| ||| |||||| ||||||||||  ||| | |||   ||||||| |||||||||||   ||||||||||| | |||||    
T  18673363 caggtggtggataaaattaagtctcttacttttatgtggttgaaggagaaatatgtcagtcttcccctcaattatcatggttggtggcttagcccgttta 18673462  T
Q  239 tcattttaggcattggctaa 258  Q
      ||||||||||||||||||    
T  18673463 ctattttaggcattggctaa 18673482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 9200996 - 9200938
Alignment:
Q  154 attaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatta 212  Q
    ||||||||||||||||||||||||| |||| |||||| | ||||||||||| |||||||    
T  9200996 attaagtcgcttgcttttacgtggtagaaggcgaagtatatttctcttcccctcaatta 9200938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 258
Target Start/End: Complemental strand, 5667465 - 5667346
Alignment:
Q  139 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 238  Q
    ||||||||||||| ||||||||  ||  |||| |  ||||||||||||| |||| |  ||||| ||||||||||||||   |||||| |||||| |||||    
T  5667465 caggtggtcgataggattaagttactgactttcaaatggttgaagacgaggtttataactctttccttcaattatcatggttggtggattagtccgttta 5667366  T
Q  239 tcattttaggcattggctaa 258  Q
      ||||||||||| ||||||    
T  5667365 ctattttaggcataggctaa 5667346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 238
Target Start/End: Original strand, 34714895 - 34715013
Alignment:
Q  120 caaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcag 219  Q
    |||||| ||| |||| || || ||||| |||||||||||||| ||  |||||| |||||||||  | || |||  |||||||||| ||||||| |||       
T  34714895 caaagaatgctcggtaatacacgtggttgataagattaagtctctcacttttaggtggttgaaagcaaaatttacttctcttcccatcaattaccatggt 34714994  T
Q  220 tggtggcttagtctgttta 238  Q
    |||||||||||||||||||    
T  34714995 tggtggcttagtctgttta 34715013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 232
Target Start/End: Original strand, 2682761 - 2682854
Alignment:
Q  139 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 232  Q
    ||||| ||||| ||||||||||| |||||||||| ||||||||||  ||| |||  | || ||| |||||||| ||||   |||||||||||||    
T  2682761 caggttgtcgacaagattaagtcccttgcttttaggtggttgaaggtgaaatttcctactattctcttcaattgtcatggttggtggcttagtc 2682854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 7155422 - 7155495
Alignment:
Q  143 tggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 216  Q
    |||| |||||||||||||  ||| |||||||||||||||||   || |||  |||||| |||||||||||||||    
T  7155422 tggttgataagattaagtttcttacttttacgtggttgaaggaaaaattttcttctctacccttcaattatcat 7155495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 112 - 324
Target Start/End: Original strand, 4740971 - 4741180
Alignment:
Q  112 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 211  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  4740971 tttaatgtcaaagattgctcggttatctaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtatatttctcttcccttcaatt 4741070  T
Q  212 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagtt-aggcaacttttgtatata 310  Q
    | |||  ||| |||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||    ||| || ||| |||||||| |||||||||    
T  4741071 accatgggtgatggcttagtccgtttaccattttaggcataggctaagagtttcttttctgtttttt----atgctctgttcaggcaactattgtatata 4741166  T
Q  311 ttgttcttgactct 324  Q
    ||||||||||||||    
T  4741167 ttgttcttgactct 4741180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 14788867 - 14788964
Alignment:
Q  140 aggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttt 237  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| |||||| ||| ||||||||||||||| ||||    
T  14788867 aggtggtagataagattaagtcccttgcttttacgtggttgaaggcgaaatttgtttctcttccctccaattaccatgagtggtggcttagtcagttt 14788964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 276
Target Start/End: Original strand, 13043321 - 13043485
Alignment:
Q  112 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 211  Q
    |||||||||||||| ||| ||||||  ||||||||||| || |||||||||||||| ||| ||||||||||| |||||| | | ||||||||| |||| |    
T  13043321 tttaatgtcaaagaatgctcggttaatcaggtggtcgacaaaattaagtcgcttgcctttgcgtggttgaaggcgaagtatttctctcttcccctcaact 13043420  T
Q  212 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgtttt 276  Q
    | |||  |||||||||||  | ||| | |||||| ||||| ||||||||||||||||||| ||||    
T  13043421 accatgggtggtggcttaacccgttcaccattttgggcataggctaagagtttcttttctatttt 13043485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 276
Target Start/End: Original strand, 13051398 - 13051562
Alignment:
Q  112 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 211  Q
    |||||||||||||| ||| ||||||  ||||||||||| || |||||||||||||| ||| ||||||||||| |||||| | | ||||||||| |||| |    
T  13051398 tttaatgtcaaagaatgctcggttaatcaggtggtcgacaaaattaagtcgcttgcctttgcgtggttgaaggcgaagtatttctctcttcccctcaact 13051497  T
Q  212 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgtttt 276  Q
    | |||  |||||||||||  | ||| | |||||| ||||| ||||||||||||||||||| ||||    
T  13051498 accatgggtggtggcttaacccgttcaccattttgggcataggctaagagtttcttttctatttt 13051562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 20017522 - 20017410
Alignment:
Q  139 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 238  Q
    |||||||| || ||||||||||| ||||||| |||||||||||||| ||| |||||||| |||||||| || || |||   ||||||||| ||| ||| |    
T  20017522 caggtggtagaaaagattaagtctcttgcttatacgtggttgaagaagaaatttgtttcacttcccttaaactaccatggctggtggctttgtccgttca 20017423  T
Q  239 tcattttaggcat 251  Q
     |||||| |||||    
T  20017422 ccattttgggcat 20017410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 258
Target Start/End: Original strand, 47160990 - 47161106
Alignment:
Q  142 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatca 241  Q
    ||||| |||| |||||||| | |  |||||| ||||||||||  |||||||  ||||||||| |||||||| |||   ||||||||||| | ||||||      
T  47160990 gtggtggataggattaagttgttaacttttaagtggttgaaggtgaagtttccttctcttccattcaattaccatggttggtggcttagaccgtttattg 47161089  T
Q  242 ttttaggcattggctaa 258  Q
    |||||||||||||||||    
T  47161090 ttttaggcattggctaa 47161106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 251
Target Start/End: Original strand, 6894192 - 6894304
Alignment:
Q  139 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 238  Q
    ||||||||||||| ||||||||  ||  |||| |  ||||||||| ||| |||| |  ||||||||||||||||||||   |||||| |||||| |||||    
T  6894192 caggtggtcgataggattaagttactgactttcaaatggttgaaggcgaggtttataactcttcccttcaattatcatggttggtggattagtccgttta 6894291  T
Q  239 tcattttaggcat 251  Q
      |||||||||||    
T  6894292 ctattttaggcat 6894304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 232
Target Start/End: Original strand, 25845647 - 25845740
Alignment:
Q  139 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 232  Q
    |||||||| ||||| |||||||||||  |||| | |||||||||| ||||||||  |||||| ||||| || || |||   |||||||||||||    
T  25845647 caggtggttgataaaattaagtcgctctctttcatgtggttgaaggcgaagtttccttctctgcccttgaactaccatggttggtggcttagtc 25845740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 33388634 - 33388601
Alignment:
Q  178 ttgaagacgaagtttgtttctcttcccttcaatt 211  Q
    |||||||||||||||| |||||||||||||||||    
T  33388634 ttgaagacgaagtttgcttctcttcccttcaatt 33388601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 6925997 - 6926049
Alignment:
Q  186 gaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 238  Q
    |||||||||  |||||||||| |||||||||  |||||||||||||| |||||    
T  6925997 gaagtttgtaactcttccctttaattatcatgggtggtggcttagtccgttta 6926049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 174 - 324
Target Start/End: Original strand, 16610602 - 16610752
Alignment:
Q  174 gtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgt 273  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  16610602 gtggttgaagacgaagtttgtttctcttcccttcaattatcatgggtggtggcttagtccgtttaccattttaggcattggctaatagtttcttttctgt 16610701  T
Q  274 tttttgtttatgatcagttaggcaacttttgtatatattgttcttgactct 324  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16610702 tttttgtttatgatctgttaggcaacttttgtatatattgttcttgactct 16610752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 112 - 277
Target Start/End: Complemental strand, 31706552 - 31706387
Alignment:
Q  112 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 211  Q
    |||||||||||||||||   |||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| | ||||||||||| ||||||    
T  31706552 tttaatgtcaaagattgtttggttatccaggtggtcgacaagattaagtcgcttgcttttacgtggttaaaggcgaagtatatttctcttcccctcaatt 31706453  T
Q  212 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttt 277  Q
    | |||  |||||||||||||| ||||| ||| || ||||| |||||||||||||||||||||||||    
T  31706452 accatgggtggtggcttagtccgtttaccatattgggcataggctaagagtttcttttctgttttt 31706387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 144 - 271
Target Start/End: Complemental strand, 29651894 - 29651767
Alignment:
Q  144 ggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcatt 243  Q
    |||||| |||||||||| |||||||||| ||||||||||  ||||||   ||||||||| | |||||||||||  |||||||||||||| ||||| |||     
T  29651894 ggtcgacaagattaagttgcttgctttttcgtggttgaatgcgaagtacttttctcttctcctcaattatcatgggtggtggcttagtccgtttaccatg 29651795  T
Q  244 ttaggcattggctaagagtttcttttct 271  Q
    || ||||| |||||||  ||||||||||    
T  29651794 ttgggcataggctaaggttttcttttct 29651767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 264
Target Start/End: Complemental strand, 704642 - 704490
Alignment:
Q  112 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 211  Q
    ||||| || ||||||||  ||||||| | |||| | |||||||||||||  ||| ||||| | ||||||||| | ||||||| || |||||| |||||||    
T  704642 tttaacgttaaagattgttcggttattcgggtgatagataagattaagtttcttacttttgcttggttgaaggcaaagtttgcttttcttccattcaatt 704543  T
Q  212 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagttt 264  Q
    |||||  |||||| ||||||| ||||| |||  | |||||||||||| |||||    
T  704542 atcatgggtggtgacttagtccgtttaccatactgggcattggctaaaagttt 704490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 212
Target Start/End: Complemental strand, 30722638 - 30722538
Alignment:
Q  112 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 211  Q
    |||||||||||||| ||| ||||||  |||||||| || || |||||||||||||| ||||||||||||||| |||||| |   ||||||||| ||||||    
T  30722638 tttaatgtcaaagaatgctcggttaatcaggtggtagacaatattaagtcgcttgcctttacgtggttgaaggcgaagtattcctctcttcccctcaatt 30722539  T
Q  212 a 212  Q
    |    
T  30722538 a 30722538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 264
Target Start/End: Complemental strand, 27482798 - 27482646
Alignment:
Q  112 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 211  Q
    |||||||  ||||| ||| |||| || |||||||| |||||||||||||| || || |||  ||||||||||  ||| |  ||| | |||||||||||||    
T  27482798 tttaatgataaagaatgctcggtaattcaggtggttgataagattaagtccctcgccttttggtggttgaaggtgaaatacgttacacttcccttcaatt 27482699  T
Q  212 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagttt 264  Q
    |||||   ||||||||||||| ||| | ||| || ||||| ||||||||||||    
T  27482698 atcatggctggtggcttagtccgttcaccatgttgggcataggctaagagttt 27482646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 257
Target Start/End: Original strand, 29994645 - 29994735
Alignment:
Q  167 cttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggcta 257  Q
    |||||| ||||||||||  |||||||  || |||||||||||||||||||   |||||||||| || |||||   ||||||||||||||||    
T  29994645 cttttaagtggttgaaggtgaagtttccttttcttcccttcaattatcatggttggtggcttaatccgtttactgttttaggcattggcta 29994735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 22922550 - 22922506
Alignment:
Q  139 caggtggtcgataagattaagtcgcttgcttttacgtggttgaag 183  Q
    |||||||| || ||||||||||| |||||||||||||||||||||    
T  22922550 caggtggtagagaagattaagtctcttgcttttacgtggttgaag 22922506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 257
Target Start/End: Original strand, 18967864 - 18967970
Alignment:
Q  151 aagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggca 250  Q
    ||||||||||| ||| |||||| |||||||||| |||| |||| ||||||||| || ||| |||||   || ||||||||||  ||||| ||  | ||||    
T  18967864 aagattaagtcactttcttttatgtggttgaaggcgaaatttgcttctcttccatttaatgatcatggatgatggcttagtccatttattatgctgggca 18967963  T
Q  251 ttggcta 257  Q
    |||||||    
T  18967964 ttggcta 18967970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 22924208 - 22924159
Alignment:
Q  139 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaa 188  Q
    |||||||| || ||||||||||| |||| |||||||||||||||| ||||    
T  22924208 caggtggtagagaagattaagtctcttggttttacgtggttgaaggcgaa 22924159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 263
Target Start/End: Complemental strand, 19315103 - 19314979
Alignment:
Q  139 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 238  Q
    |||||||| |||||||||||||| ||  | |||| |||||||||| |||| |||| ||   ||||||  |||||||||   ||||||||||| | |||||    
T  19315103 caggtggttgataagattaagtcactcacatttatgtggttgaaggcgaaatttgctttatttccctggaattatcatggttggtggcttagcccgttta 19315004  T
Q  239 tcattttaggcattggctaagagtt 263  Q
     |||  ||||||| |||||| ||||    
T  19315003 ccatgctaggcataggctaatagtt 19314979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 21041995 - 21042047
Alignment:
Q  186 gaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 238  Q
    |||||||||  |||||||||| |||||||||  |||||||||||||| |||||    
T  21041995 gaagtttgtaactcttccctttaattatcatgggtggtggcttagtccgttta 21042047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 183
Target Start/End: Complemental strand, 22923181 - 22923149
Alignment:
Q  151 aagattaagtcgcttgcttttacgtggttgaag 183  Q
    ||||||||||| |||||||||||||||||||||    
T  22923181 aagattaagtctcttgcttttacgtggttgaag 22923149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 178 - 324
Target Start/End: Original strand, 8090506 - 8090652
Alignment:
Q  178 ttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttt 277  Q
    ||||||||| ||||| |||||||||||||||||||||||  |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  8090506 ttgaagacggagtttatttctcttcccttcaattatcatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctgttttt 8090605  T
Q  278 tgtttatgatcagttaggcaacttttgtatatattgttcttgactct 324  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||    
T  8090606 tgtttatgatctgttaggcaacttttgtatatattgttcttaactct 8090652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 276
Target Start/End: Complemental strand, 40638930 - 40638766
Alignment:
Q  112 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 211  Q
    |||||||||||||| ||| | ||||  ||||||||||| |||||||| |||||| | ||||||||||||| |  ||||| || |||||||||||||||||    
T  40638930 tttaatgtcaaagagtgctcagttaatcaggtggtcgacaagattaaatcgcttacctttacgtggttgatgttgaagtatgcttctcttcccttcaatt 40638831  T
Q  212 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgtttt 276  Q
    | |||  |||||||||||||| |||||  ||||| | ||| |||||| |||||||||| ||||||    
T  40638830 accatgggtggtggcttagtccgtttacgattttggacataggctaaaagtttcttttatgtttt 40638766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 142 - 257
Target Start/End: Original strand, 31640241 - 31640356
Alignment:
Q  142 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatca 241  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||| |||| |||||||||| ||||||| |||   ||||||||||||| |||||  |    
T  31640241 gtggtagataagattaagtcacttgcttttacgtggttgaaggcgaaatttgcttctcttcccctcaattaccatggatggtggcttagtccgtttacaa 31640340  T
Q  242 ttttaggcattggcta 257  Q
    || ||||||| |||||    
T  31640341 ttataggcataggcta 31640356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 112 - 276
Target Start/End: Original strand, 20948080 - 20948244
Alignment:
Q  112 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 211  Q
    ||||||| |||||| ||| |||||   ||||||||| | ||||||||||||||||| ||| ||||||||||| |||||| |  |||||||| | ||||||    
T  20948080 tttaatgccaaagactgctcggtttctcaggtggtcaacaagattaagtcgcttgccttttcgtggttgaaggcgaagtattcttctcttcgcctcaatt 20948179  T
Q  212 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgtttt 276  Q
    | |||  |||||||||||||| ||||| ||| || ||  | |||||||  |||||||||| ||||    
T  20948180 accatgggtggtggcttagtccgtttaccatgttgggtgtaggctaaggttttcttttctttttt 20948244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 27708286 - 27708189
Alignment:
Q  139 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtt 236  Q
    |||||||| ||||||||||||||||| |||||||||||||| ||| |||| |||| | ||||||||||||||  ||||   |||||||||| ||||||    
T  27708286 caggtggttgataagattaagtcgctcgcttttacgtggttaaaggcgaaatttgctactcttcccttcaatcttcatggttggtggcttaatctgtt 27708189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 43451281 - 43451330
Alignment:
Q  19 catcatcctacaagtgcgtaccacacgcttccactaattcaaatgcacac 68  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43451281 catcatcctacaagtgcgcaccacacgcttccactaattcaaatgcacac 43451330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 237
Target Start/End: Complemental strand, 44736075 - 44735977
Alignment:
Q  139 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttt 237  Q
    ||||||||||| ||||||||||| ||  |||||| |||||||||| ||||||||  | ||||||||||||||| ||||   | ||||||||||||||||    
T  44736075 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggcgaagtttaatactcttcccttcaattttcatggttagtggcttagtctgttt 44735977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 238
Target Start/End: Original strand, 27009200 - 27009296
Alignment:
Q  142 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 238  Q
    ||||| |||||||||||||| || ||||||| ||| |||||| |||| |||  |||||||||||||||||| |||   ||||||||||||| |||||    
T  27009200 gtggttgataagattaagtctctcgcttttaggtgattgaaggcgaaatttacttctcttcccttcaattaccatggttggtggcttagtccgttta 27009296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 269
Target Start/End: Complemental strand, 9420795 - 9420722
Alignment:
Q  196 tctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttctttt 269  Q
    ||||||||| |||||||||||  |||||||||||| | |||||  ||||||||||| |||||||  ||||||||    
T  9420795 tctcttcccctcaattatcatgggtggtggcttagcccgtttactattttaggcataggctaaggttttctttt 9420722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 258
Target Start/End: Complemental strand, 45131220 - 45131107
Alignment:
Q  145 gtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattt 244  Q
    ||||| ||||||| |||||   |||| | ||||||||||  ||| | || ||||||||||||||||||||||  ||||||||||||||  |||| |||      
T  45131220 gtcgacaagattatgtcgcaaactttcatgtggttgaaggggaaatatgcttctcttcccttcaattatcatgggtggtggcttagtccatttaccatgc 45131121  T
Q  245 taggcattggctaa 258  Q
    | ||||||||||||    
T  45131120 tgggcattggctaa 45131107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 229
Target Start/End: Original strand, 9840768 - 9840855
Alignment:
Q  142 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggctta 229  Q
    ||||| ||||||||||| ||||| ||||||| ||| |||||| | || |||| | ||||||| ||||||||||||   ||||||||||    
T  9840768 gtggttgataagattaaatcgctcgcttttatgtgattgaaggcaaaatttgctactcttccattcaattatcatggttggtggctta 9840855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 245
Target Start/End: Complemental strand, 33645932 - 33645830
Alignment:
Q  143 tggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcat 242  Q
    |||| ||||||||||||||||| || |||| ||||||||||   || |||| | ||||||| |||||||| |||   |||||| |||||||||| | |||    
T  33645932 tggttgataagattaagtcgctcgcatttaggtggttgaaggaaaaatttgctactcttcctttcaattaccatggttggtgggttagtctgttcaccat 33645833  T
Q  243 ttt 245  Q
    |||    
T  33645832 ttt 33645830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 21563423 - 21563488
Alignment:
Q  151 aagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 216  Q
    ||||||||||| ||| ||||||||||||||| | | || |||||||||||| | || |||||||||    
T  21563423 aagattaagtcactttcttttacgtggttgagggcaaaatttgtttctctttcattaaattatcat 21563488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 263
Target Start/End: Original strand, 30505717 - 30505838
Alignment:
Q  142 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatca 241  Q
    ||||| |||||||||||||  || || ||||  | |||||||  ||| |||  ||| ||||||||||||||||||   |||||| |||||||||||| ||    
T  30505717 gtggttgataagattaagtttctcgcatttatctagttgaaggagaaattttcttcacttcccttcaattatcatggttggtggtttagtctgtttacca 30505816  T
Q  242 ttttaggcattggctaagagtt 263  Q
    | || ||||| |||||| ||||    
T  30505817 tgttgggcataggctaatagtt 30505838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 121 - 257
Target Start/End: Original strand, 52577965 - 52578101
Alignment:
Q  121 aaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagt 220  Q
    |||| |||| ||||| | |||||| | |||||||||||||| |||||||||||||||||||||  ||||||||| |||||||||||||||||||||   |    
T  52577965 aaagtttgctcggttcttcaggtgatagataagattaagtcccttgcttttacgtggttgaaggtgaagtttgtatctcttcccttcaattatcatggtt 52578064  T
Q  221 ggtggcttagtctgtttatcattttaggcattggcta 257  Q
    |||||||||||  ||||  |||| ||||||| |||||    
T  52578065 ggtggcttagtgcgtttgccattctaggcataggcta 52578101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 232
Target Start/End: Original strand, 9831377 - 9831476
Alignment:
Q  133 gttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 232  Q
    ||||| |||||||| |||||||| ||||| |||||||||| |||||||||| |||| || ||| | ||||||||||||||||||   |||||||||||||    
T  9831377 gttattcaggtggtggataagatcaagtctcttgcttttaggtggttgaaggcgaaattcgttacacttcccttcaattatcatggctggtggcttagtc 9831476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 112 - 232
Target Start/End: Complemental strand, 30972515 - 30972395
Alignment:
Q  112 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 211  Q
    ||||||| |||||| ||| |  |||| |||||||| ||||| |||||||||||  |||| | |||| ||||| |||| |||  ||||||||||||||| |    
T  30972515 tttaatggcaaagagtgctcaattatgcaggtggttgataaaattaagtcgctgactttcatgtggctgaaggcgaaatttccttctcttcccttcaact 30972416  T
Q  212 atcatcagtggtggcttagtc 232  Q
    |||||   |||||||||||||    
T  30972415 atcatggctggtggcttagtc 30972395  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 238
Target Start/End: Original strand, 22653286 - 22653385
Alignment:
Q  139 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 238  Q
    |||||||| ||||||||||| |||||  | |||| |||||||||| |||| |||| ||   || ||||||||||||||   |||||||||||||||||||    
T  22653286 caggtggttgataagattaaatcgctcacatttatgtggttgaaggcgaaatttgcttacattaccttcaattatcatggttggtggcttagtctgttta 22653385  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 232
Target Start/End: Complemental strand, 11131287 - 11131194
Alignment:
Q  139 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 232  Q
    |||||||| |||| |||||||| |||  |||||  ||||||||||  |||||||||  |||||||||| |||||||||   |||||||||||||    
T  11131287 caggtggtagataggattaagttgctatcttttcagtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtc 11131194  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 19846574 - 19846646
Alignment:
Q  186 gaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaa 258  Q
    ||||| || ||||||||||||||||||||||  ||||||| |||||| ||||| ||| || ||||||| ||||    
T  19846574 gaagtatgcttctcttcccttcaattatcatgggtggtggattagtccgtttaccatgttgggcattgtctaa 19846646  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 43001717 - 43001801
Alignment:
Q  148 gataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 232  Q
    |||||||||||||| ||  | |||| |||||||||| ||||||||  | ||||||  ||||||||||||  ||||||||||||||    
T  43001717 gataagattaagtcactaacatttatgtggttgaaggcgaagtttactactcttcatttcaattatcatatgtggtggcttagtc 43001801  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 229
Target Start/End: Complemental strand, 8831039 - 8830949
Alignment:
Q  139 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggctta 229  Q
    |||||||| || || |||||||||||  |||||| || |||||||  ||| ||| ||| ||||||||||||||| ||| | ||||||||||    
T  8831039 caggtggttgacaaaattaagtcgctcacttttatgtagttgaaggagaaatttctttatcttcccttcaattaccatgactggtggctta 8830949  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 239
Target Start/End: Complemental strand, 25130538 - 25130441
Alignment:
Q  142 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttat 239  Q
    |||||||||||||| ||||| || ||||| | ||||||||||  ||| |||| | ||||| || |||| ||||||   ||||||||||||| ||||||    
T  25130538 gtggtcgataagatcaagtccctcgctttcatgtggttgaaggagaaatttgctactctttccctcaactatcatggttggtggcttagtccgtttat 25130441  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 48336968 - 48337036
Alignment:
Q  148 gataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 216  Q
    ||||| |||||||||||  |||| | |||||||||| |||| |||  |||||||||||||||| |||||    
T  48336968 gataaaattaagtcgctaactttcatgtggttgaaggcgaaatttccttctcttcccttcaatcatcat 48337036  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 238
Target Start/End: Complemental strand, 8462613 - 8462514
Alignment:
Q  139 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 238  Q
    |||||||| |||||||||||||| ||  | || | |||||||||| |||| |||| ||||||||||||||||||||||   |||||||||||||||||||    
T  8462613 caggtggttgataagattaagtcactcacattcatgtggttgaaggcgaaatttgcttctcttcccttcaattatcatggttggtggcttagtctgttta 8462514  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 5751992 - 5752057
Alignment:
Q  151 aagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 216  Q
    ||||||||||||||||  ||||||||||||||| |||||| |   ||||||||| |||||||||||    
T  5751992 aagattaagtcgcttgtctttacgtggttgaaggcgaagtattcctctcttcccctcaattatcat 5752057  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 33282823 - 33282913
Alignment:
Q  148 gataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 238  Q
    ||||| |||||||||||| |||||| ||||||||||   || |||| |||||| ||  |||||||||||   ||||||||||||| |||||    
T  33282823 gataaaattaagtcgcttacttttaggtggttgaaggaaaaatttgcttctctccctctcaattatcatggttggtggcttagtccgttta 33282913  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 39435582 - 39435484
Alignment:
Q  110 tatttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttca 208  Q
    |||| |||| |||||| ||| ||||| | |||||||| |||||||||||||| || |  || | |||||||||| |||| |||| ||||||||| ||||    
T  39435582 tattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgagttcatgtggttgaaggcgaaatttgcttctcttcctttca 39435484  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 232
Target Start/End: Original strand, 37929106 - 37929199
Alignment:
Q  139 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 232  Q
    ||||||||||||| ||||||||| || || |||| ||||||||||  ||| |||  | |||||||||| || ||||||   |||||||||||||    
T  37929106 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtc 37929199  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 33191270 - 33191210
Alignment:
Q  172 acgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 232  Q
    ||||||||||||  ||| |||| | ||||||||||||||||||||   |||||||||||||    
T  33191270 acgtggttgaagttgaaatttgatactcttcccttcaattatcatggttggtggcttagtc 33191210  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 38738483 - 38738543
Alignment:
Q  198 tcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaa 258  Q
    ||||||| |||||||||||   ||||||||||| | |||||  ||||||||||||||||||    
T  38738483 tcttcccctcaattatcatggttggtggcttagcccgtttactattttaggcattggctaa 38738543  T

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Target: scaffold0204 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 216
Target Start/End: Original strand, 24490 - 24558
Alignment:
Q  148 gataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 216  Q
    ||||| |||||||||||  |||| | |||||||||| |||| |||  |||||||||||||||| |||||    
T  24490 gataaaattaagtcgctaactttcatgtggttgaaggcgaaatttccttctcttcccttcaatcatcat 24558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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