View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7577_1D_low_18 (Length: 297)
Name: NF7577_1D_low_18
Description: NF7577_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_1D_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 59 - 222
Target Start/End: Original strand, 34894368 - 34894534
Alignment:
| Q |
59 |
aatatctcctcttcaactcttctaactaatatgaaagtgtagaaaattatacaatattttgtatgaaacctaaaatattaatcacatttcttaattcatg |
158 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34894368 |
aatatcccatcttcaactcttctaactaatatgaaagtgtagaaaattatacaatattttgtatgaaacctaaaatattaatcacatttcttaattcatg |
34894467 |
T |
|
| Q |
159 |
tgttaaaatcttaaaacaaattataatgt---tatatatacataggcctcattcataatgttcttcc |
222 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34894468 |
tgttaaaatcttaaaacaaattataattaatgtatatatacataggcctcattcataatgttcttcc |
34894534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 34894241 - 34894305
Alignment:
| Q |
1 |
aactatttactccttccatctcataatatagtataacaacaaaaactatctcattttaaatatct |
65 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34894241 |
aactatttactcctttcatctcatattatagtataacaacaaaaactatctcattttaaatatct |
34894305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University