View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7577_1D_low_19 (Length: 296)
Name: NF7577_1D_low_19
Description: NF7577_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_1D_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 31 - 280
Target Start/End: Original strand, 17724939 - 17725188
Alignment:
| Q |
31 |
gattaatagaatgccatcatctgcaatccaaaacaaggttccccattccatactgttccctgatgaacctttgtttcgtattgctcctcgggtttttgga |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17724939 |
gattaatagaatgccatcatctgcaatccaaaacaaggttccccattccatattgttccctgatgaacctttgtttcgtattgctcctcggatttttgga |
17725038 |
T |
|
| Q |
131 |
tccacttgctttgttcatgatcttactcccggtttagataaattgtgtgctcgtgcaattaaatgtgtctttctaggctatacaagagttcaaaaaggat |
230 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17725039 |
tccacttgctttgttcatgatcttactccaggtttagataaattgtgtgctcgtgcaattaaatgtgtctttctaggctattcaagagttcaaaaaggat |
17725138 |
T |
|
| Q |
231 |
atcagtgctattgtccctccacacaccgcttctacatgtctgctgatgtc |
280 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
17725139 |
atcggtgctattgtccctccacacatcgcttctacatgtctgctgatgtc |
17725188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 23 - 280
Target Start/End: Original strand, 13039536 - 13039793
Alignment:
| Q |
23 |
ggatacttgattaatagaatgccatcatctgcaatccaaaacaaggttccccattccatactgttccctgatgaacctttgtttcgtattgctcctcggg |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13039536 |
ggatacttgattaatagaatgccatcatctgtaatccaaaacaaggttccccattccatattgttccctgatgaacctttgtttcgtattgctcctcgga |
13039635 |
T |
|
| Q |
123 |
tttttggatccacttgctttgttcatgatcttactcccggtttagataaattgtgtgctcgtgcaattaaatgtgtctttctaggctatacaagagttca |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13039636 |
tttttggatccacttgctttgttcatgatcttactccaggtttagataaattgtgtgctcgtaaaattaaatgtgtctttctaggctattcaagagttca |
13039735 |
T |
|
| Q |
223 |
aaaaggatatcagtgctattgtccctccacacaccgcttctacatgtctgctgatgtc |
280 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13039736 |
aaaaggatatcggtgctattgtccctccacacatcgcttctacatgtctgctgatgtc |
13039793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 20705240 - 20705321
Alignment:
| Q |
95 |
gaacctttgtttcgtattgctcctcgggtttttggatccacttgctttgttcatgatcttactcccggtttagataaattgt |
176 |
Q |
| |
|
||||||||||||| |||| ||| || ||||||||| ||||| ||||||||||||||| ||| ||||||||||| |||| |
|
|
| T |
20705240 |
gaacctttgtttcatattaatccacgtgtttttggaagtacttgttttgttcatgatctttttccaggtttagataagttgt |
20705321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 138 - 280
Target Start/End: Complemental strand, 11025985 - 11025843
Alignment:
| Q |
138 |
gctttgttcatgatcttactcccggtttagataaattgtgtgctcgtgcaattaaatgtgtctttctaggctatacaagagttcaaaaaggatatcagtg |
237 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||| ||| |||||||||| |||||||||||||||| || || |||||||| | ||||||||| |||| |
|
|
| T |
11025985 |
gctttattcatgatcttactcaaggtttagataaaatgtttgctcgtgcagttaaatgtgtctttctcagcgattcaagagtttagaaaggatataagtg |
11025886 |
T |
|
| Q |
238 |
ctattgtccctccacacaccgcttctacatgtctgctgatgtc |
280 |
Q |
| |
|
||||||||| || || || |||||||||||| || ||||||| |
|
|
| T |
11025885 |
ctattgtccatcaacgcatagcttctacatgtttgttgatgtc |
11025843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University