View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7577_1D_low_2 (Length: 641)

Name: NF7577_1D_low_2
Description: NF7577_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7577_1D_low_2
NF7577_1D_low_2
[»] chr6 (1 HSPs)
chr6 (1-626)||(23333222-23333847)


Alignment Details
Target: chr6 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 1 - 626
Target Start/End: Original strand, 23333222 - 23333847
Alignment:
Q  1 agaacaaacatctattttccacgcaaacctttttgagttaattaatgctgcaaaatttacgttggttaattaaaatctggtgctcagcttaattttaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23333222 agaacaaacatctattttccacgcaaacctttttgagttaattaatgctgcaaaatttacgttggttaattaaaatctggtgctcagcttaattttaatg 23333321  T
Q  101 gtcaagatagaaagactccataagaaaaaatacggcagtccaaaaagaatccaccacactggttgcaaatttgttatactttttgggagtattacacata 200  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23333322 gtcaagacagaaagactccataagaaaaaatacagcagtccaaaaagaatccaccacactggttgcaaatttgttataccttttgggagtattacacata 23333421  T
Q  201 gctagaggcaaactcctaaaatgttcgcaatttatcttatgccctgtcgtgcgcatcttcgtaatgacgacattaagcaagccaacgaaatcatttgaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23333422 gctagaggcaaactcctaaaatgttcgcaatttatcttatgccccatcgtgcgcatcttcgtaatgacgacattaagcaagccaacgaaatcatttgaat 23333521  T
Q  301 tagggattttgtccaacgtaattcagcatattataatgattgtttcatcagaaagcagttgacatataaaaaatcacttacagttgcggtctcaagctct 400  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23333522 tagggattttgtccaacgtaagtcagcatattataatgattgttccatcagaaagcagttgacatataaaaaatcacttacagttgcggtctcaagctct 23333621  T
Q  401 gcataatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctgaggtaacgacaatgtgtacatttttcctgg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23333622 gcataatatgtattcagcaatcgcatctcttgaagggaaagctcatcagcaacacgaacaacagttcctgaggcaacgacaatgtgtacatttttcctgg 23333721  T
Q  501 taaatcatgacacaatatatcaaaacagcaaaaaattacataaaacaaacttatcaacctctttgggggagtactgcttcagctgcattctggcacacaa 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  23333722 taaatcatgacacaatatatcaaaacagcaaaaaattacataaaacaaacttatcaacctcttggggggagtactgcttcagctgcattccggcacacaa 23333821  T
Q  601 ttttatcggtcaacttcgtgatgtcc 626  Q
    ||||||||||||||||||| ||||||    
T  23333822 ttttatcggtcaacttcgttatgtcc 23333847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University