View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_1D_low_23 (Length: 273)
Name: NF7577_1D_low_23
Description: NF7577_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_1D_low_23 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 40310867 - 40311123
Alignment:
| Q |
17 |
catcatgaggcacttgccaaccatcagttggcaaactctgaaacactctcgcctgatcagctagccaattcccaaatgatgactcactatgacctgggga |
116 |
Q |
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| T |
40310867 |
catcatgaggcacttgccaaccatcagttggcaaactctgaaacactctcgcctgatcagctagccaattcccaaatgatgactcactatgacctgggga |
40310966 |
T |
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| Q |
117 |
atagcgaaacacttcacgacaatcggctggtaagttctcaagcacactatgagatggtcaatgctaacaatttccccagctatgaaatagttaatgctga |
216 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40310967 |
atagtgaaacacttcacgacaatcggctggtaagttctcaagcacactatgagatggtcaatgctaacaatttccccagctatgaaatagttaatgctga |
40311066 |
T |
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| Q |
217 |
aacttcgccaaacaatgaagaacataccccagagacacagccaagtaagaagaggaa |
273 |
Q |
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| T |
40311067 |
aacttcgccaaacaatgaagaacataccccagaaacacagccaagtaagaagaggaa |
40311123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 40295905 - 40296161
Alignment:
| Q |
17 |
catcatgaggcacttgccaaccatcagttggcaaactctgaaacactctcgcctgatcagctagccaattcccaaatgatgactcactatgacctgggga |
116 |
Q |
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||||| |||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| | |
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| T |
40295905 |
catcacgaggcactagacaaccatcagttgccaaactctgaaacactctcgcctgatcagctagccaattcccaaatgatgtctcagtatgacctggcaa |
40296004 |
T |
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| Q |
117 |
atagcgaaacacttcacgacaatcggctggtaagttctcaagcacactatgagatggtcaatgctaacaatttccccagctatgaaatagttaatgctga |
216 |
Q |
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|| | |||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40296005 |
atggtgaaacacttcacagcaatcagctggtaagttctcaagcacactatgagatagtcaatgctaacaatttccccagctatgaaatagtaaatgctga |
40296104 |
T |
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| Q |
217 |
aacttcgccaaacaatgaagaacataccccagagacacagccaagtaagaagaggaa |
273 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40296105 |
aactccgccaaacaatgaagaacataccccagagacacagccaagtaagaggaggaa |
40296161 |
T |
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