View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7577_1D_low_24 (Length: 265)

Name: NF7577_1D_low_24
Description: NF7577_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7577_1D_low_24
NF7577_1D_low_24
[»] chr1 (20 HSPs)
chr1 (12-258)||(3544594-3544840)
chr1 (12-256)||(1248081-1248324)
chr1 (117-258)||(28358396-28358537)
chr1 (14-258)||(5808984-5809228)
chr1 (14-258)||(13867326-13867570)
chr1 (115-254)||(19014481-19014619)
chr1 (116-258)||(52691976-52692118)
chr1 (107-256)||(40563053-40563202)
chr1 (115-229)||(45795710-45795824)
chr1 (137-222)||(3074271-3074356)
chr1 (137-222)||(22191311-22191396)
chr1 (175-258)||(27393442-27393525)
chr1 (119-258)||(38070340-38070479)
chr1 (157-227)||(45270787-45270857)
chr1 (137-222)||(21405363-21405448)
chr1 (86-182)||(20987638-20987734)
chr1 (14-49)||(45795609-45795644)
chr1 (163-258)||(45795827-45795922)
chr1 (212-258)||(32352803-32352849)
chr1 (115-183)||(25504562-25504630)
[»] chr6 (21 HSPs)
chr6 (12-258)||(14843630-14843876)
chr6 (116-258)||(19350449-19350591)
chr6 (113-258)||(32186185-32186330)
chr6 (116-254)||(29976505-29976650)
chr6 (116-258)||(14686501-14686643)
chr6 (65-246)||(25350676-25350857)
chr6 (113-257)||(26514226-26514370)
chr6 (142-227)||(10362664-10362749)
chr6 (116-258)||(13086044-13086186)
chr6 (122-255)||(7956167-7956299)
chr6 (174-258)||(10919957-10920041)
chr6 (137-222)||(29056045-29056130)
chr6 (156-258)||(1104440-1104542)
chr6 (16-48)||(14686711-14686743)
chr6 (174-258)||(34434823-34434907)
chr6 (171-258)||(18588909-18588996)
chr6 (174-227)||(900385-900438)
chr6 (119-183)||(11060430-11060494)
chr6 (113-177)||(13938221-13938285)
chr6 (115-183)||(17078758-17078826)
chr6 (115-183)||(18051017-18051085)
[»] chr5 (17 HSPs)
chr5 (12-258)||(476614-476860)
chr5 (72-258)||(380362-380548)
chr5 (115-258)||(42259784-42259927)
chr5 (115-201)||(22176376-22176462)
chr5 (115-235)||(42039221-42039341)
chr5 (158-222)||(41590643-41590707)
chr5 (158-225)||(29572398-29572465)
chr5 (158-225)||(29573775-29573842)
chr5 (158-225)||(29575152-29575219)
chr5 (158-225)||(29576529-29576596)
chr5 (158-225)||(29577906-29577973)
chr5 (158-225)||(29579283-29579350)
chr5 (158-227)||(4297833-4297902)
chr5 (164-234)||(15862194-15862264)
chr5 (205-246)||(22437810-22437851)
chr5 (115-183)||(19513033-19513101)
chr5 (113-177)||(33170160-33170224)
[»] scaffold0043 (1 HSPs)
scaffold0043 (12-257)||(34103-34348)
[»] chr3 (21 HSPs)
chr3 (12-258)||(31675332-31675578)
chr3 (12-258)||(31920844-31921090)
chr3 (116-258)||(19875748-19875890)
chr3 (157-258)||(25024337-25024438)
chr3 (116-258)||(53941808-53941950)
chr3 (116-258)||(55367115-55367257)
chr3 (115-258)||(40513217-40513360)
chr3 (142-227)||(52250648-52250733)
chr3 (116-258)||(14307713-14307855)
chr3 (157-258)||(48930272-48930373)
chr3 (115-258)||(34829904-34830040)
chr3 (119-255)||(46190000-46190136)
chr3 (163-258)||(18381610-18381705)
chr3 (158-227)||(6825369-6825438)
chr3 (12-49)||(34829820-34829857)
chr3 (119-196)||(35537276-35537353)
chr3 (115-258)||(14863958-14864101)
chr3 (137-219)||(31547897-31547980)
chr3 (201-258)||(42807259-42807316)
chr3 (137-222)||(44888430-44888515)
chr3 (113-177)||(962737-962801)
[»] chr7 (19 HSPs)
chr7 (116-258)||(27218615-27218757)
chr7 (119-258)||(19544895-19545034)
chr7 (115-258)||(17504052-17504195)
chr7 (115-258)||(17549019-17549162)
chr7 (72-246)||(20349425-20349598)
chr7 (157-258)||(11341342-11341443)
chr7 (119-246)||(34103985-34104112)
chr7 (174-222)||(8752925-8752973)
chr7 (142-222)||(25018847-25018927)
chr7 (115-258)||(23887588-23887730)
chr7 (115-258)||(23898764-23898906)
chr7 (137-222)||(17056055-17056140)
chr7 (132-222)||(22819246-22819336)
chr7 (186-227)||(41805282-41805323)
chr7 (174-246)||(23054476-23054548)
chr7 (175-245)||(20918524-20918594)
chr7 (157-258)||(13553677-13553778)
chr7 (167-220)||(39658919-39658972)
chr7 (174-226)||(12308647-12308699)
[»] chr4 (18 HSPs)
chr4 (15-222)||(2071944-2072151)
chr4 (14-258)||(43516241-43516485)
chr4 (116-258)||(9690927-9691069)
chr4 (119-209)||(52617407-52617497)
chr4 (119-258)||(56336993-56337132)
chr4 (115-233)||(7098986-7099104)
chr4 (119-222)||(36183045-36183148)
chr4 (163-227)||(38296258-38296322)
chr4 (83-258)||(55725199-55725374)
chr4 (115-183)||(49925835-49925903)
chr4 (212-258)||(3129482-3129528)
chr4 (212-258)||(23872969-23873015)
chr4 (157-246)||(2365552-2365641)
chr4 (137-222)||(9777896-9777981)
chr4 (170-227)||(29328301-29328358)
chr4 (157-198)||(41382519-41382560)
chr4 (115-183)||(19114940-19115008)
chr4 (161-245)||(55464379-55464463)
[»] chr2 (8 HSPs)
chr2 (116-258)||(6823916-6824058)
chr2 (115-258)||(11196855-11196998)
chr2 (142-227)||(43310790-43310875)
chr2 (157-227)||(26146761-26146831)
chr2 (143-227)||(10689087-10689170)
chr2 (119-245)||(7301181-7301307)
chr2 (116-256)||(9668501-9668641)
chr2 (115-183)||(15018181-15018249)
[»] scaffold0189 (1 HSPs)
scaffold0189 (116-255)||(6593-6732)
[»] chr8 (14 HSPs)
chr8 (113-246)||(25193590-25193723)
chr8 (108-222)||(29721439-29721553)
chr8 (119-258)||(15439632-15439764)
chr8 (119-258)||(15530936-15531068)
chr8 (115-256)||(6245593-6245727)
chr8 (116-258)||(36025026-36025168)
chr8 (119-255)||(37165617-37165753)
chr8 (116-258)||(12341072-12341214)
chr8 (137-258)||(18187672-18187793)
chr8 (158-227)||(36492928-36492997)
chr8 (174-224)||(12332411-12332461)
chr8 (115-183)||(6901413-6901481)
chr8 (119-183)||(17659339-17659403)
chr8 (115-183)||(36157658-36157726)
[»] scaffold0048 (1 HSPs)
scaffold0048 (174-258)||(63792-63876)
[»] scaffold0026 (1 HSPs)
scaffold0026 (142-225)||(67611-67694)
[»] scaffold0061 (1 HSPs)
scaffold0061 (157-227)||(55208-55278)
[»] scaffold0017 (1 HSPs)
scaffold0017 (157-227)||(143356-143426)
[»] scaffold0131 (1 HSPs)
scaffold0131 (212-258)||(4049-4095)
[»] scaffold0029 (1 HSPs)
scaffold0029 (212-258)||(134347-134393)
[»] scaffold0002 (2 HSPs)
scaffold0002 (212-258)||(312174-312220)
scaffold0002 (212-258)||(327628-327674)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 12 - 258
Target Start/End: Complemental strand, 3544840 - 3544594
Alignment:
Q  12 ggacatcaccaagccacctgtcataccaaaagtaagtagacacaccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3544840 ggacatcaccaagccacctgtcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacc 3544741  T
Q  112 catcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3544740 catcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagc 3544641  T
Q  212 accctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3544640 accctataccaaaaaccatctctatctaccaacattcgccaacacca 3544594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 1248324 - 1248081
Alignment:
Q  12 ggacatcaccaagccacctgtcataccaaaagtaagtagacacaccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacc 111  Q
    ||||||||||||||||||||||||||||||||||||||| ||  ||||| ||||||||  |||| |||| |||| |||||||||||||| || | |||||    
T  1248324 ggacatcaccaagccacctgtcataccaaaagtaagtagccaagccattccctaccctcttcgacaccctctcctcaaaccaactccccgcagcttcacc 1248225  T
Q  112 catcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagc 211  Q
    || ||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||| |||| |    
T  1248224 caccccatccctaatcttcactacttccctccaccaagatgaagtactccag-cccctacctccaacctccctacctcctcaccatatctcgccaccaac 1248126  T
Q  212 accctataccaaaaaccatctctatctaccaacattcgccaacac 256  Q
    | |||||||||||||||| || |||| ||||| || | |||||||    
T  1248125 agcctataccaaaaaccacctttatccaccaatatacaccaacac 1248081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 117 - 258
Target Start/End: Original strand, 28358396 - 28358537
Alignment:
Q  117 catccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccct 216  Q
    |||||||||||||| |||||||| |||||||||||||   |||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  28358396 catccctaatcttcgctacttccctccaccaagatgagacactccggcccccaacctccaacctccctgcctcctcaccatatctcgccaccaacaccct 28358495  T
Q  217 ataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
     |||||||| ||  ||||||||||||||| || |||||||||    
T  28358496 gtaccaaaacccgcctctatctaccaacaatctccaacacca 28358537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 258
Target Start/End: Original strand, 5808984 - 5809228
Alignment:
Q  14 acatcaccaagccacctgtcataccaaaagtaagtagacacaccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcaccca 113  Q
    |||||||||||||||||||||||||||||| | |||   |  |||   || ||| || |||| |||| ||| || |||||||  || ||  | ||||| |    
T  5808984 acatcaccaagccacctgtcataccaaaagaatgtactaatgccaccccccacctttttcgacaccctctctgcgaaccaacctccatctgcatcaccta 5809083  T
Q  114 tcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcac 213  Q
     |||||||||||||||||||||||||| |||| ||||||||  |||||||||||| ||||||||||||||  ||| | ||||||| | |||||| || ||    
T  5809084 ccccatccctaatcttcactacttcctgccactaagatgaaacactccggcccccaacctccaacctcccaaccttcacaccataccgcgctacaagaac 5809183  T
Q  214 cctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    ||||||||| |  ||| || | || |||||||| |||||||||||    
T  5809184 cctataccagagcccacctttgtccaccaacatccgccaacacca 5809228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 13867570 - 13867326
Alignment:
Q  14 acatcaccaagccacctgtcataccaaaagtaagtagacacaccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcaccca 113  Q
    ||||||||||||||||||||||||||||||||||||     |||||  |||||  |  |||| |||| ||| |||||||| | ||||||  | || || |    
T  13867570 acatcaccaagccacctgtcataccaaaagtaagtactagaaccatctcctactttcttcgacaccctctctgcaaaccagcccccctctacatcgccta 13867471  T
Q  114 tcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcac 213  Q
     |||||||||||||||  ||| ||    |||||| ||||||  ||||| |||||| |||||||||| ||| |||  ||||||||| |  |||||||| ||    
T  13867470 ccccatccctaatctttgctatttttcgccaccacgatgaaacactcctgcccccaacctccaaccgcccagccgtctcaccataccgagctaccaggac 13867371  T
Q  214 cctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    ||||||||| |||||| ||||||| |||||||| |||||||||||    
T  13867370 cctataccataaaccacctctatccaccaacatccgccaacacca 13867326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 254
Target Start/End: Complemental strand, 19014619 - 19014481
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcacc 214  Q
    ||||||||||||||||||||  ||| |||||||||| |||  |||||||||||  |||||||||||||||| |||||||||||||||||| |||| |||     
T  19014619 cccatccctaatcttcactatctccctccaccaagaagaaacactccggcccca-acctccaacctccctgtctcctcaccatatctcgccaccaacact 19014521  T
Q  215 ctataccaaaaaccatctctatctaccaacattcgccaac 254  Q
      ||||||||| ||| |||| || |||||||| |||||||    
T  19014520 taataccaaaacccacctctgtccaccaacatccgccaac 19014481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 258
Target Start/End: Original strand, 52691976 - 52692118
Alignment:
Q  116 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 215  Q
    |||||| |||||||| |||  ||| |||||||||| |||  |||||| ||| ||||| |||||||||| |||||||||||||| | ||| |||| |||||    
T  52691976 ccatccttaatcttcgctatctccctccaccaagaagaatcactccgaccctctaccaccaacctcccagcctcctcaccataccgcgccaccaacaccc 52692075  T
Q  216 tataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    ||||||| || || |||||||| |||||||| | |||||||||    
T  52692076 tataccagaacccctctctatccaccaacatcctccaacacca 52692118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 107 - 256
Target Start/End: Complemental strand, 40563202 - 40563053
Alignment:
Q  107 tcacccatcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgcta 206  Q
    |||||||  ||||||||||||||| |||  ||  ||||||||||||||  | |||||||||| |||||||||||| ||||||| || ||||||||||| |    
T  40563202 tcacccactccatccctaatcttcgctatctctctccaccaagatgaaacagtccggcccccaacctccaacctctctgcctcatctccatatctcgcca 40563103  T
Q  207 ccagcaccctataccaaaaaccatctctatctaccaacattcgccaacac 256  Q
    |||  || |||||||| || || |||||||| |||||||| | |||||||    
T  40563102 ccaaaactctataccacaacccgtctctatccaccaacatcctccaacac 40563053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 229
Target Start/End: Original strand, 45795710 - 45795824
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcacc 214  Q
    |||||||||||||||| ||||||||  |||||||||||||  ||||| |||||| |||||||||| |||  ||  ||||||||| |  |||||||| |||    
T  45795710 cccatccctaatcttcgctacttcccgccaccaagatgaaacactcctgcccccaacctccaaccgcccaaccgtctcaccataccgtgctaccaggacc 45795809  T
Q  215 ctataccaaaaacca 229  Q
     ||||||| ||||||    
T  45795810 ttataccataaacca 45795824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 3074271 - 3074356
Alignment:
Q  137 tccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctatacca 222  Q
    ||||||||||| || |||  ||||||| |||| ||| ||||||||||  ||||||||||||| | |||||||| ||||||||||||    
T  3074271 tccttccaccacgaagaaacactccggtccccaaccgccaacctcccatcctcctcaccataacgcgctaccaacaccctatacca 3074356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 22191396 - 22191311
Alignment:
Q  137 tccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctatacca 222  Q
    ||||||||||| || |||  |||||||||||| ||| ||||||||||  ||||||||||||| | ||| |||| ||||||||||||    
T  22191396 tccttccaccacgaagaaacactccggcccccaaccaccaacctcccatcctcctcaccataacacgccaccaacaccctatacca 22191311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 27393525 - 27393442
Alignment:
Q  175 caacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||||||||||||||||||||||| || || |||| |||| ||||||| |||||  ||||||| |||||||  | |||||||||    
T  27393525 caacctccctgcctcctcaccatacctagcaaccaacaccatataccataaacctcctctatcaaccaacaacctccaacacca 27393442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 258
Target Start/End: Original strand, 38070340 - 38070479
Alignment:
Q  119 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctat 218  Q
    |||||||||||| |||  ||  |||||||||  |||  |||||| ||||| |||||||||| ||| |||||||||||||| || || ||||  || ||||    
T  38070340 tccctaatcttcgctaactctctccaccaagtagaaacactccgacccccaacctccaaccgcccagcctcctcaccataccttgccaccaaaactctat 38070439  T
Q  219 accaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||| || ||  ||||||| |||||||  |||||||||||    
T  38070440 accacaaccctcctctatccaccaacaaccgccaacacca 38070479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 45270787 - 45270857
Alignment:
Q  157 actccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 227  Q
    |||||||||||| ||||||||||||||  |||||||| |||||||||| ||||  | ||||||||| ||||    
T  45270787 actccggcccccaacctccaacctcccatcctcctcatcatatctcgccaccaaaatcctataccataaac 45270857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 21405363 - 21405448
Alignment:
Q  137 tccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctatacca 222  Q
    ||||||||||| || |||  |||| ||||||| ||| ||||||||||  ||||||||||||| |  ||||||| ||||||||||||    
T  21405363 tccttccaccacgaagaaacactctggcccccaaccaccaacctcccatcctcctcaccataacgtgctaccaacaccctatacca 21405448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 20987638 - 20987734
Alignment:
Q  86 gcaaaccaactcccctcatcgtcacccatcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctcc 182  Q
    |||||||||||| |||||   || || |||||||||||||||||| |||  ||| ||||||||   |||  ||||| ||||||||||||||||||||    
T  20987638 gcaaaccaactctcctcagaatcgcctatcccatccctaatcttcgctatctccctccaccaaagagaaccactcctgccccctacctccaacctcc 20987734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 45795609 - 45795644
Alignment:
Q  14 acatcaccaagccacctgtcataccaaaagtaagta 49  Q
    |||||||| |||||||||||||||||||||||||||    
T  45795609 acatcacctagccacctgtcataccaaaagtaagta 45795644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 45795827 - 45795922
Alignment:
Q  163 gccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||||| |||||||||| |||  ||  ||||||||| |  |||||||| ||| ||||||| |||||| || |||| |||||||| |||||||||||    
T  45795827 gcccccaacctccaaccgcccaaccgtctcaccataccgtgctaccaggaccttataccataaaccacctttatccaccaacatccgccaacacca 45795922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 32352849 - 32352803
Alignment:
Q  212 accctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    ||||||||||| |||||| ||||||| |||||||| |||||||||||    
T  32352849 accctataccacaaaccacctctatccaccaacatccgccaacacca 32352803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 25504630 - 25504562
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccc 183  Q
    |||||||||||||||| | || |||  ||||||||| |||  |||| ||||||| ||||||||||||||    
T  25504630 cccatccctaatcttcccaacctcccgccaccaagaagaacaactctggcccccaacctccaacctccc 25504562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 258
Target Start/End: Complemental strand, 14843876 - 14843630
Alignment:
Q  12 ggacatcaccaagccacctgtcataccaaaagtaagtagacacaccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14843876 ggacatcaccaagccacctgtcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacc 14843777  T
Q  112 catcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  14843776 catcccatccctaatcttcactacttccttccaccaagatgaagtactccgtccccctacctccaacctccctgtctcctcaccatatctcgctaccagc 14843677  T
Q  212 accctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14843676 accctataccaaaaaccatctctatctaccaacattcgccaacacca 14843630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 116 - 258
Target Start/End: Original strand, 19350449 - 19350591
Alignment:
Q  116 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 215  Q
    ||||||||||||||| |||| |||||||||||||||||   |||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||    
T  19350449 ccatccctaatcttcgctacctccttccaccaagatgatacactccggcccccaacctccaacctccctgcctcctcaccatatctcgccaccaacaccc 19350548  T
Q  216 tataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||||||||| ||| ||||||||| |||||  |||||||||||    
T  19350549 tataccaaaacccacctctatctatcaacaaccgccaacacca 19350591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 113 - 258
Target Start/End: Original strand, 32186185 - 32186330
Alignment:
Q  113 atcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagca 212  Q
    ||||||||||||||||||||||| ||| |||||||||| |||| |||||||||||| |||||||||||||| ||| |||||| ||||||||| |||| ||    
T  32186185 atcccatccctaatcttcactacctccctccaccaagaagaagcactccggcccccaacctccaacctcccagccacctcactatatctcgccaccaaca 32186284  T
Q  213 ccctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    ||||||||||||| ||| ||||||| |||||||   ||||||||||    
T  32186285 ccctataccaaaacccacctctatccaccaacaactgccaacacca 32186330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 116 - 254
Target Start/End: Complemental strand, 29976650 - 29976505
Alignment:
Q  116 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacc-------tccaacctccctgcctcctcaccatatctcgctacc 208  Q
    ||||||||||||||| |||| |||||||||||||||||   |||||||||||| |||       |||||||||||||||||||||||||||||||| |||    
T  29976650 ccatccctaatcttcgctacctccttccaccaagatgatacactccggcccccaacccccaacctccaacctccctgcctcctcaccatatctcgccacc 29976551  T
Q  209 agcaccctataccaaaaaccatctctatctaccaacattcgccaac 254  Q
    | ||||||||||||||| ||| ||||||||| |||||  |||||||    
T  29976550 aacaccctataccaaaacccacctctatctatcaacaaccgccaac 29976505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 116 - 258
Target Start/End: Complemental strand, 14686643 - 14686501
Alignment:
Q  116 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 215  Q
    ||||||||||||||| |||||||  ||||||||||||||  ||||||||||||||||||||||| |||  ||  ||| ||||| | ||||||||| ||||    
T  14686643 ccatccctaatcttcgctacttctctccaccaagatgaaacactccggccccctacctccaaccgcccaaccgtctccccataccgcgctaccaggaccc 14686544  T
Q  216 tataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||||||||| ||  ||||||| |||||||| |||||||||||    
T  14686543 tataccaaaatccgcctctatccaccaacatccgccaacacca 14686501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 65 - 246
Target Start/End: Original strand, 25350676 - 25350857
Alignment:
Q  65 acccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcccatccctaatcttcactacttccttccaccaagatgaagtactccggc 164  Q
    |||||| |||| |||| ||| |||||||||| ||| ||   ||| || || ||||||||||||||| |||  ||| || ||||| | |||  ||||||||    
T  25350676 acccttttcgacaccctctctgcaaaccaacccccatccgtgtctcctattccatccctaatcttcgctatctccctcaaccaaaaagaatcactccggc 25350775  T
Q  165 cccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaacat 246  Q
    |||||||| |||||||||| |||||||||||||| | ||| |||| |||||||||||| || ||||||||||| ||||||||    
T  25350776 cccctaccaccaacctcccagcctcctcaccataccgcgccaccaacaccctataccagaacccatctctatccaccaacat 25350857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 113 - 257
Target Start/End: Original strand, 26514226 - 26514370
Alignment:
Q  113 atcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagca 212  Q
    |||||||||||||||||| |||  ||| ||||||||   |||  |||||||||||| |||||||| |||||||||||||||||||| |  || |||| ||    
T  26514226 atcccatccctaatcttcgctatctccctccaccaaatagaaccactccggcccccaacctccaaactccctgcctcctcaccataccgagccaccaaca 26514325  T
Q  213 ccctataccaaaaaccatctctatctaccaacattcgccaacacc 257  Q
    | |||||||| || || |||||||| |||| ||| | ||||||||    
T  26514326 ctctataccagaacccctctctatccaccagcatcctccaacacc 26514370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 10362664 - 10362749
Alignment:
Q  142 ccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 227  Q
    ||||||||| |||  |||||||||||| ||||||||||||||  ||||||||||||||||||| ||||  ||||||||||| ||||    
T  10362664 ccaccaagaagaaccactccggccccccacctccaacctcccatcctcctcaccatatctcgccaccaaaaccctataccataaac 10362749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 258
Target Start/End: Original strand, 13086044 - 13086186
Alignment:
Q  116 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 215  Q
    ||||| |||||| || |||| |||||||||||| | |||  |||||||||||| ||||||||||||||| |  |||| ||||| |  || || || || |    
T  13086044 ccatctctaatcctccctacctccttccaccaaaaagaacaactccggcccccaacctccaacctccctccaacctcgccataacgggcgactagaacac 13086143  T
Q  216 tataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    ||||||| |||||  |||||||||||||||| | |||||||||    
T  13086144 tataccacaaacctactctatctaccaacatcctccaacacca 13086186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 255
Target Start/End: Complemental strand, 7956299 - 7956167
Alignment:
Q  122 ctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctatacc 221  Q
    ||||||||||| || | |||||||||  | |||  ||||||||| | | |||||||||||||  |||||||||||||||| || |||| ||| | |||||    
T  7956299 ctaatcttcacaaccttcttccaccataaagaaccactccggcctcat-cctccaacctcccgtcctcctcaccatatctagccaccaacactcgatacc 7956201  T
Q  222 aaaaaccatctctatctaccaacattcgccaaca 255  Q
    ||| |||||||||||| || ||||| ||||||||    
T  7956200 aaagaccatctctatcaactaacatacgccaaca 7956167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 10920041 - 10919957
Alignment:
Q  174 ccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||||||||| |||||||||||||| || || |||| ||||||||||||||| ||  ||||||| |||||||| | |||||||||    
T  10920041 ccaacctccccgcctcctcaccatacctagcaaccaacaccctataccaaaacccccctctatcaaccaacatcctccaacacca 10919957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 29056045 - 29056130
Alignment:
Q  137 tccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctatacca 222  Q
    ||||||||||| || |||  |||||||||||| ||| ||||||||||  ||||||||||||| |  ||||||| ||||||||||||    
T  29056045 tccttccaccacgaagaaacactccggcccccaaccgccaacctcccatcctcctcaccataacgtgctaccaacaccctatacca 29056130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 156 - 258
Target Start/End: Complemental strand, 1104542 - 1104440
Alignment:
Q  156 tactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaaca 255  Q
    ||||| ||||||| ||| |||||||| |||||||||||||||| |  || |||| |||||||||||| ||||||  ||||| ||| ||||  | ||||||    
T  1104542 tactcaggcccccaaccaccaacctcactgcctcctcaccataacgagcaaccatcaccctataccacaaaccacatctatttactaacaaactccaaca 1104443  T
Q  256 cca 258  Q
    |||    
T  1104442 cca 1104440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 14686743 - 14686711
Alignment:
Q  16 atcaccaagccacctgtcataccaaaagtaagt 48  Q
    |||||||||||||||||||||||||||||||||    
T  14686743 atcaccaagccacctgtcataccaaaagtaagt 14686711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 34434823 - 34434907
Alignment:
Q  174 ccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    ||||||||||  ||||||||||||||||||| ||||  ||||||||||| | || |   || ||||||||||| |||||||||||    
T  34434823 ccaacctcccatcctcctcaccatatctcgccaccaaaaccctataccatatactactcctctctaccaacatccgccaacacca 34434907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 258
Target Start/End: Original strand, 18588909 - 18588996
Alignment:
Q  171 cctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||||||||||||  |||||||||||||||| || |||| ||| | |||||| || || |||||||| || ||||  |||||||||||    
T  18588909 cctccaacctcccgtcctcctcaccatatctagccaccaacactcgataccataacccgtctctatcaactaacaaacgccaacacca 18588996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 900438 - 900385
Alignment:
Q  174 ccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 227  Q
    |||||||||||||||||||||| || || ||  ||| |||||||||||||||||    
T  900438 ccaacctccctgcctcctcaccgtacctagcagccaacaccctataccaaaaac 900385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 11060494 - 11060430
Alignment:
Q  119 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccc 183  Q
    |||||||||  | |||| ||| |||||||||| |||  |||||||||||| ||||||||||||||    
T  11060494 tccctaatccgccctacctccctccaccaagaagaacaactccggcccccaacctccaacctccc 11060430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 13938221 - 13938285
Alignment:
Q  113 atcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaa 177  Q
    |||||||| |||||| ||||||  |||| |||||||||||||  ||||||||||||  |||||||    
T  13938221 atcccatctctaatcctcactatctcctgccaccaagatgaacaactccggcccccatcctccaa 13938285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 17078826 - 17078758
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccc 183  Q
    |||||| ||||||  | |||| ||| |||||||||| |||  |||||||||||| ||||||||||||||    
T  17078826 cccatctctaatccgccctacctccctccaccaagaagaacaactccggcccccaacctccaacctccc 17078758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 18051085 - 18051017
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccc 183  Q
    |||||| ||||||  | |||| ||| |||||||||| |||  |||||||||||| ||||||||||||||    
T  18051085 cccatctctaatccgccctacctccctccaccaagaagaacaactccggcccccaacctccaacctccc 18051017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 476614 - 476860
Alignment:
Q  12 ggacatcaccaagccacctgtcataccaaaagtaagtagacacaccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  476614 ggacatcaccaagccacctgtcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcagcgtcacc 476713  T
Q  112 catcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagc 211  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  476714 catcccgtccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagc 476813  T
Q  212 accctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  476814 accctataccaaaaaccatctctatctaccaacattcgccaacacca 476860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 72 - 258
Target Start/End: Original strand, 380362 - 380548
Alignment:
Q  72 tcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctac 171  Q
    |||| |||| |||||||||||| | ||||||| | || || | ||| |||||||||||||||| ||||||| ||||||| |||  |||||||||||| ||    
T  380362 tcgacaccctctccgcaaaccagcccccctcaccttctcctaacccgtccctaatcttcactatttccttctaccaagaagaaccactccggcccccaac 380461  T
Q  172 ctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    ||||||||||||||||||||||||||| | |||| |||||||||||||||| |||||||||||||| |||||||| |||||||||||    
T  380462 ctccaacctccctgcctcctcaccataccgcgcttccagcaccctataccagaaaccatctctatccaccaacatccgccaacacca 380548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 115 - 258
Target Start/End: Original strand, 42259784 - 42259927
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcacc 214  Q
    ||||||||||||||||||||| ||| |||||||||| |||| |||||||| ||| |||||||| ||||| ||| |||||| ||||||| | || | ||||    
T  42259784 cccatccctaatcttcactacctccctccaccaagaagaagcactccggctcccaacctccaaactcccagccacctcacgatatctctccacaaacacc 42259883  T
Q  215 ctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
     |||||||||| ||| ||||||| |||||||| || ||||||||    
T  42259884 ttataccaaaacccacctctatccaccaacatccgtcaacacca 42259927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 201
Target Start/End: Complemental strand, 22176462 - 22176376
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatct 201  Q
    |||||||||||||||| ||| ||||||||||||||| ||   |||||||||||| ||| ||||||||||||||||||||||||||||    
T  22176462 cccatccctaatcttcgctatttccttccaccaagaagagacactccggcccccaaccgccaacctccctgcctcctcaccatatct 22176376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 42039341 - 42039221
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcacc 214  Q
    ||||||||||||||||| ||  ||| ||||||||||  ||| ||||||||||||  ||||||||| |||  || ||||||||||| |||| |||| ||||    
T  42039341 cccatccctaatcttcattaactccctccaccaagaaaaagcactccggcccccatcctccaaccgcccaaccacctcaccatatttcgccaccaacacc 42039242  T
Q  215 ctataccaaaaaccatctcta 235  Q
    ||||||||||| ||| |||||    
T  42039241 ctataccaaaacccacctcta 42039221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 41590643 - 41590707
Alignment:
Q  158 ctccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctatacca 222  Q
    ||||||||||| ||| ||||||||||  ||||||||||||| ||||| |||| ||||||||||||    
T  41590643 ctccggcccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccctatacca 41590707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 29572465 - 29572398
Alignment:
Q  158 ctccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 225  Q
    ||||||||||| |||||||||||| |||||||||||||||| || ||  ||| |||||| ||||||||    
T  29572465 ctccggcccccaacctccaacctctctgcctcctcaccatacctagcagccaacaccctttaccaaaa 29572398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 29573842 - 29573775
Alignment:
Q  158 ctccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 225  Q
    ||||||||||| |||||||||||| |||||||||||||||| || ||  ||| |||||| ||||||||    
T  29573842 ctccggcccccaacctccaacctctctgcctcctcaccatacctagcagccaacaccctttaccaaaa 29573775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 29575219 - 29575152
Alignment:
Q  158 ctccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 225  Q
    ||||||||||| |||||||||||| |||||||||||||||| || ||  ||| |||||| ||||||||    
T  29575219 ctccggcccccaacctccaacctctctgcctcctcaccatacctagcagccaacaccctttaccaaaa 29575152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 29576596 - 29576529
Alignment:
Q  158 ctccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 225  Q
    ||||||||||| |||||||||||| |||||||||||||||| || ||  ||| |||||| ||||||||    
T  29576596 ctccggcccccaacctccaacctctctgcctcctcaccatacctagcagccaacaccctttaccaaaa 29576529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 29577973 - 29577906
Alignment:
Q  158 ctccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 225  Q
    ||||||||||| |||||||||||| |||||||||||||||| || ||  ||| |||||| ||||||||    
T  29577973 ctccggcccccaacctccaacctctctgcctcctcaccatacctagcagccaacaccctttaccaaaa 29577906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 29579350 - 29579283
Alignment:
Q  158 ctccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 225  Q
    ||||||||||| |||||||||||| |||||||||||||||| || ||  ||| |||||| ||||||||    
T  29579350 ctccggcccccaacctccaacctctctgcctcctcaccatacctagcagccaacaccctttaccaaaa 29579283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 227
Target Start/End: Complemental strand, 4297902 - 4297833
Alignment:
Q  158 ctccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 227  Q
    |||||| |||| ||| ||||||||||  ||||||||||||| ||||| |||| |||||||||||| ||||    
T  4297902 ctccgggccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccctataccataaac 4297833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 15862264 - 15862194
Alignment:
Q  164 ccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctct 234  Q
    ||||| |||||||||| ||| ||||| |||||||| || || | || ||||||||||||||| ||||||||    
T  15862264 cccccaacctccaaccgcccagcctcttcaccatacctagcaatcaacaccctataccaaaacccatctct 15862194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 22437810 - 22437851
Alignment:
Q  205 taccagcaccctataccaaaaaccatctctatctaccaacat 246  Q
    ||||| |||||||||||| ||||||||||||||||| |||||    
T  22437810 taccaacaccctataccacaaaccatctctatctactaacat 22437851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 19513101 - 19513033
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccc 183  Q
    |||||| | |||| || |||| ||| |||||||||| |||  |||||||||||| ||||||||||||||    
T  19513101 cccatctcgaatcctccctacctccctccaccaagaagaacaactccggccccccacctccaacctccc 19513033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 33170160 - 33170224
Alignment:
Q  113 atcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaa 177  Q
    ||||||||||||||| ||||||  |||  |||||||||||||  ||||||||||||  |||||||    
T  33170160 atcccatccctaatcctcactatctcccgccaccaagatgaacaactccggcccccatcctccaa 33170224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 34348 - 34103
Alignment:
Q  12 ggacatcaccaagccacctgtcataccaaaagtaagtagacacaccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||    
T  34348 ggacatcaccaagccacctgtcataccaaaagtaagtagacacgccattacctattcttctcgaaacccgctccgcaaaccaactcccctcatcgtcacc 34249  T
Q  112 catcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34248 catcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgtctcctcaccatatctcgctaccagc 34149  T
Q  212 accctataccaaaaaccatctctatctaccaacattcgccaacacc 257  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  34148 accctataccaaaaaccatctctctctaccaacattcgccaacacc 34103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 31675332 - 31675578
Alignment:
Q  12 ggacatcaccaagccacctgtcataccaaaagtaagtagacacaccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacc 111  Q
    ||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| | ||||||||||||||| |||||||||||||||||||  ||||    
T  31675332 ggacatcaccaagccacctatcataccaaaagtaagtagacgcgccattacctaccttcctcgaaacccgctcctcaaaccaactcccctcatctacacc 31675431  T
Q  112 catcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagc 211  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  31675432 catcccgtccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcaccaccagc 31675531  T
Q  212 accctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||    
T  31675532 accctataccaaaaaccacctctatccaccaacattcgccaacacca 31675578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 12 - 258
Target Start/End: Complemental strand, 31921090 - 31920844
Alignment:
Q  12 ggacatcaccaagccacctgtcataccaaaagtaagtagacacaccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacc 111  Q
    ||||||||||||||||||| ||||||||||||||||||||| | |||||||||||| | |||||||||| |||| |||||||||||||||||||  ||||    
T  31921090 ggacatcaccaagccacctatcataccaaaagtaagtagacgcgccattacctaccttcctcgaaacccactcctcaaaccaactcccctcatctacacc 31920991  T
Q  112 catcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagc 211  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  31920990 catcccgtccctaatcttcactacttccttctaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcaccaccagc 31920891  T
Q  212 accctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||    
T  31920890 accctataccaaaaaccacctctatccaccaacattcgccaacacca 31920844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 116 - 258
Target Start/End: Original strand, 19875748 - 19875890
Alignment:
Q  116 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 215  Q
    |||||| |||||||| |||| |||||||||||||||||   |||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |||||    
T  19875748 ccatccttaatcttcgctacctccttccaccaagatgatacactccggcccccaacctccaacctccttgcctcctcaccatatctcgccaccaacaccc 19875847  T
Q  216 tataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||||||||| ||| ||||||||| |||||  |||||||||||    
T  19875848 tataccaaaacccacctctatctatcaacaaccgccaacacca 19875890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 157 - 258
Target Start/End: Complemental strand, 25024438 - 25024337
Alignment:
Q  157 actccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacac 256  Q
    |||||| ||||| ||| |||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| || ||||| | |||||||    
T  25024438 actccgacccccaaccgccaacctccctgcctcctcaccatatctagcttccaacaccctataccaaaaaccatctctatccactaacatcctccaacac 25024339  T
Q  257 ca 258  Q
    ||    
T  25024338 ca 25024337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 258
Target Start/End: Original strand, 53941808 - 53941950
Alignment:
Q  116 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 215  Q
    ||||||||||||||| |||  ||| ||||| || | |||  |||||||||||||||| |||||||||| |||||||||||||| | ||| |||| ||||     
T  53941808 ccatccctaatcttcgctatctccctccactaaaaagaatcactccggccccctaccaccaacctcccagcctcctcaccataccgcgccaccaacacct 53941907  T
Q  216 tataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    ||||||| || || |||||||| |||||||| | |||||||||    
T  53941908 tataccagaacccctctctatccaccaacatcctccaacacca 53941950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 258
Target Start/End: Original strand, 55367115 - 55367257
Alignment:
Q  116 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 215  Q
    ||||| |||||||||  ||  ||| |||||||| | |||  ||||||||||||||||||||||||| |||||||||||||||||||||||| ||  |||     
T  55367115 ccatctctaatcttcgttatctccatccaccaaaaggaatcactccggccccctacctccaacctctctgcctcctcaccatatctcgctaacaaaacct 55367214  T
Q  216 tataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    ||||||| || ||| ||||||| || ||||| | |||||||||    
T  55367215 tataccacaacccacctctatcaactaacatcctccaacacca 55367257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 115 - 258
Target Start/End: Complemental strand, 40513360 - 40513217
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcacc 214  Q
    |||||||||||||||  ||| ||||  |||||| | ||||  ||||| |||||| |||||||||| ||| |||  ||||||||| |  |||||||| |||    
T  40513360 cccatccctaatctttgctaattcccgccaccacggtgaaacactcctgcccccaacctccaaccgcccagccgtctcaccataccgagctaccaggacc 40513261  T
Q  215 ctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||||||| |||||| ||||||| |||||||| |||||||||||    
T  40513260 ctataccataaaccacctctatccaccaacatccgccaacacca 40513217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 227
Target Start/End: Complemental strand, 52250733 - 52250648
Alignment:
Q  142 ccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 227  Q
    ||||||||| |||  |||||||||||| ||||||||||||||  ||||||||||||||||||| |||| |||||||||||| ||||    
T  52250733 ccaccaagaagaaccactccggcccccaacctccaacctcccatcctcctcaccatatctcgccaccaacaccctataccataaac 52250648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 258
Target Start/End: Original strand, 14307713 - 14307855
Alignment:
Q  116 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 215  Q
    ||||||||||||||| |||  ||| ||||||||| |||   |||||||||||| | |||||| ||||||||||||||||||||||||||  |||  || |    
T  14307713 ccatccctaatcttcgctatctccctccaccaaggtgacacactccggcccccaaactccaatctccctgcctcctcaccatatctcgccgccaatactc 14307812  T
Q  216 tataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    || |||| || ||  ||||||| || ||||||| |||||||||    
T  14307813 tacaccagaaccccgctctatccacgaacattctccaacacca 14307855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 157 - 258
Target Start/End: Original strand, 48930272 - 48930373
Alignment:
Q  157 actccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacac 256  Q
    ||||| |||||| ||||||||||||||  ||||||||||||||||||| ||||  ||||||||||| |||| ||  || ||||||||||  |||||||||    
T  48930272 actccagcccccaacctccaacctcccatcctcctcaccatatctcgccaccaaaaccctataccataaactattcctctctaccaacagccgccaacac 48930371  T
Q  257 ca 258  Q
    ||    
T  48930372 ca 48930373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 258
Target Start/End: Original strand, 34829904 - 34830040
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcacc 214  Q
    |||||||||||||||| |||||||   |||||||||||||  ||||||| |||| |||||| | ||       | ||||||||||| |||| |||| |||    
T  34829904 cccatccctaatcttcgctacttcacaccaccaagatgaaacactccgggccccaacctcccatct-------ttctcaccatatcgcgctgccagtacc 34829996  T
Q  215 ctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||||||| || ||| || |||| |||||||| |||||||||||    
T  34829997 ctataccataacccaactatatccaccaacatccgccaacacca 34830040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 255
Target Start/End: Original strand, 46190000 - 46190136
Alignment:
Q  119 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctat 218  Q
    |||||||||||| |||| ||| |||| |||   |||  |||||||||||| |||||||||| | | |||||||||||||| ||||| ||||  ||||| |    
T  46190000 tccctaatcttcgctacctccctccatcaattagaaacactccggcccccaacctccaaccgctcagcctcctcaccatacctcgccaccaataccctgt 46190099  T
Q  219 accaaaaaccatctctatctaccaacattcgccaaca 255  Q
    |||| |||||  || |||| |||||||  ||||||||    
T  46190100 accacaaacctcctttatccaccaacaaccgccaaca 46190136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 258
Target Start/End: Original strand, 18381610 - 18381705
Alignment:
Q  163 gccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    ||||||||| |||||||| ||  |||| |||||||||||||| ||||  |||| |||||| || ||  ||||||| |||||||||| |||||||||    
T  18381610 gccccctacatccaaccttccatcctcgtcaccatatctcgccaccaaaacccaataccataaccctcctctatcaaccaacattctccaacacca 18381705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 6825369 - 6825438
Alignment:
Q  158 ctccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 227  Q
    ||||||||||| ||| ||||||||||  ||||||||||||| | ||| |||| |||||||||||| ||||    
T  6825369 ctccggcccccaaccgccaacctcccatcctcctcaccataccgcgccaccaacaccctataccataaac 6825438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 34829820 - 34829857
Alignment:
Q  12 ggacatcaccaagccacctgtcataccaaaagtaagta 49  Q
    |||||||||||||||||||||||||||||||| |||||    
T  34829820 ggacatcaccaagccacctgtcataccaaaagaaagta 34829857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 196
Target Start/End: Original strand, 35537276 - 35537353
Alignment:
Q  119 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcacca 196  Q
    ||||||||| |||| || ||| |||||||| | |||  |||||||||||| |||||||| |||| |||||||||||||    
T  35537276 tccctaatcctcaccacctccctccaccaataagaatcactccggcccccaacctccaatctccttgcctcctcacca 35537353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 258
Target Start/End: Complemental strand, 14864101 - 14863958
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcacc 214  Q
    |||||| | |||| || |||| ||| |||||||||| |||  |||||||||||| ||||||||||||||  || |||| ||||| |  || || || ||     
T  14864101 cccatctcgaatcctccctacctccctccaccaagaagaacaactccggccccccacctccaacctcccacccacctcgccataacaggcgacaagaaca 14864002  T
Q  215 ctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||||||| |||||  || |||| |||||||| | |||||||||    
T  14864001 ctataccataaacctactttatcgaccaacatcctccaacacca 14863958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 219
Target Start/End: Original strand, 31547897 - 31547980
Alignment:
Q  137 tccttccaccaagatgaagtactccggcccccta-cctccaacctccctgcctcctcaccatatctcgctaccagcaccctata 219  Q
    ||||||||||| || |||  |||||||||||| | || ||||||||||  ||||||||||||| | |||||||| |||||||||    
T  31547897 tccttccaccacgaagaaacactccggccccccaaccaccaacctcccatcctcctcaccataacgcgctaccaacaccctata 31547980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 42807259 - 42807316
Alignment:
Q  201 tcgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||| |||| ||||||| |||| |||| ||| |||||||||||||| |||||||||||    
T  42807259 tcgccaccaacaccctaaaccataaactatccctatctaccaacatccgccaacacca 42807316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 44888430 - 44888515
Alignment:
Q  137 tccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctatacca 222  Q
    ||||||||||| || |||  |||||| ||| | ||| ||||||||||  ||||||||||||| | ||| |||| ||||||||||||    
T  44888430 tccttccaccacgaagaaacactccgaccctcaaccaccaacctcccatcctcctcaccataacgcgccaccaacaccctatacca 44888515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 962801 - 962737
Alignment:
Q  113 atcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaa 177  Q
    ||||||||||||||| ||||||  ||| ||||||||||||||  |||||| |||||  |||||||    
T  962801 atcccatccctaatcctcactatctccctccaccaagatgaacaactccgacccccatcctccaa 962737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 9e-42; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 116 - 258
Target Start/End: Complemental strand, 27218757 - 27218615
Alignment:
Q  116 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 215  Q
    ||||||||||||||| |||| |||||||||||||||||   |||||||||||| ||| ||||||||||||||||||||||||||||||| |||| |||||    
T  27218757 ccatccctaatcttcgctacctccttccaccaagatgatacactccggcccccaaccgccaacctccctgcctcctcaccatatctcgccaccaacaccc 27218658  T
Q  216 tataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||||||||| ||| ||||||||| |||||  |||||||||||    
T  27218657 tataccaaaatccacctctatctatcaacaaccgccaacacca 27218615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 119 - 258
Target Start/End: Complemental strand, 19545034 - 19544895
Alignment:
Q  119 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctat 218  Q
    ||||||||||||||||  |||||||||||  | |||  |||||||||||| |||||||||||| ||||||||||||||||||  |   ||| ||||||||    
T  19545034 tccctaatcttcactagatccttccaccacaaagaaccactccggcccccaacctccaacctctctgcctcctcaccatatcgtgtcgccaacaccctat 19544935  T
Q  219 accaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    ||||||| ||||||||||| |||||||| |||||||||||    
T  19544934 accaaaacccatctctatccaccaacatccgccaacacca 19544895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 115 - 258
Target Start/End: Complemental strand, 17504195 - 17504052
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcacc 214  Q
    |||||| ||||||||||  || |||||||||||  | |||  ||||||||||||  |||||||||||||  |||||||||| |||||||| |||| |||     
T  17504195 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccgtatctcgccaccaacact 17504096  T
Q  215 ctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    | |||||||| |||||||||||| || |||||  ||||||||||    
T  17504095 cgataccaaagaccatctctatcaactaacatatgccaacacca 17504052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 115 - 258
Target Start/End: Original strand, 17549019 - 17549162
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcacc 214  Q
    |||||| ||||||||||  || |||||||||||  | |||  ||||||||||||  |||||||||||||  |||||||||| |||||||| |||| |||     
T  17549019 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccgtatctcgccaccaacact 17549118  T
Q  215 ctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    | |||||||| |||||||||||| || |||||  ||||||||||    
T  17549119 cgataccaaagaccatctctatcaactaacatatgccaacacca 17549162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 246
Target Start/End: Original strand, 20349425 - 20349598
Alignment:
Q  72 tcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctac 171  Q
    |||| |||| ||| |||||||||| | |||||   || || |||||||||||||||||| |||  ||| ||||||||   |||  ||||| | |||||||    
T  20349425 tcgacaccctctctgcaaaccaaccctcctcagaatcgcctatcccatccctaatcttcgctatctccctccaccaaagagaaccactcctg-cccctac 20349523  T
Q  172 ctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaacat 246  Q
    ||||||||||||||||||||||||||| |  || |||| |||||||||||| || |  |||||||||||||||||    
T  20349524 ctccaacctccctgcctcctcaccataccgagccaccaacaccctataccataacctttctctatctaccaacat 20349598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 258
Target Start/End: Original strand, 11341342 - 11341443
Alignment:
Q  157 actccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacac 256  Q
    |||||||||||| ||||||||||||||||||||||||||||| || ||  ||| ||||||||||||||| || | |||||  |||||||| | |||||||    
T  11341342 actccggcccccgacctccaacctccctgcctcctcaccatacctagcagccaacaccctataccaaaatccctatctataaaccaacatcctccaacac 11341441  T
Q  257 ca 258  Q
    ||    
T  11341442 ca 11341443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 246
Target Start/End: Original strand, 34103985 - 34104112
Alignment:
Q  119 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctat 218  Q
    ||||||||||||||||  |||||||||||| | |||  ||||| ||||||  |||||||||||| |||||||||||| || | ||| |||| ||||||||    
T  34103985 tccctaatcttcactaaatccttccaccaacaagaaccactccagcccccatcctccaacctccttgcctcctcaccgtaacgcgccaccaacaccctat 34104084  T
Q  219 accaaaaaccatctctatctaccaacat 246  Q
    ||||||| || ||| |||| | ||||||    
T  34104085 accaaaacccctctttatccatcaacat 34104112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 8752973 - 8752925
Alignment:
Q  174 ccaacctccctgcctcctcaccatatctcgctaccagcaccctatacca 222  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||    
T  8752973 ccaacctcccagcctcctcaccatatctcgccaccagcaccctatacca 8752925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 25018927 - 25018847
Alignment:
Q  142 ccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctatacca 222  Q
    ||||||||| |||  ||| || ||||| |||||||||||||| ||||||||||||||||| || |||| ||||||||||||    
T  25018927 ccaccaagaagaaccacttcgacccccaacctccaacctcccagcctcctcaccatatcttgccaccaacaccctatacca 25018847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 258
Target Start/End: Original strand, 23887588 - 23887730
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcacc 214  Q
    |||||||||||||||| |||  ||| |||||||||| |||  |||||| ||||| ||||||||||| |||||||||||||| || ||| |  |||  |||    
T  23887588 cccatccctaatcttcgctatctccctccaccaagaagaaacactccgacccccaacctccaacct-cctgcctcctcaccgtacctcaccgccaaaacc 23887686  T
Q  215 ctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||||||| ||  || |||| ||||||| ||| | |||||||||    
T  23887687 ctataccagaactcacctctgtctaccagcatcctccaacacca 23887730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 258
Target Start/End: Original strand, 23898764 - 23898906
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcacc 214  Q
    |||||||||||||||| |||  ||| |||||||||| |||  |||||| ||||| ||||||||||| |||||||||||||| || ||| |  |||  |||    
T  23898764 cccatccctaatcttcgctatctccctccaccaagaagaaacactccgacccccaacctccaacct-cctgcctcctcaccgtacctcaccgccaaaacc 23898862  T
Q  215 ctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||||||| ||  || |||| ||||||| ||| | |||||||||    
T  23898863 ctataccagaactcacctctgtctaccagcatcctccaacacca 23898906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 17056055 - 17056140
Alignment:
Q  137 tccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctatacca 222  Q
    ||||||||||| || |||  |||||||||||| ||| ||||||||||  ||||||||||||| | ||| |||| ||||||||||||    
T  17056055 tccttccaccacgaagaaacactccggcccccaaccaccaacctcccatcctcctcaccataacgcgccaccaacaccctatacca 17056140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 222
Target Start/End: Complemental strand, 22819336 - 22819246
Alignment:
Q  132 ctacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctatacca 222  Q
    |||| |||||||||||  | |||  |||||||||||| ||| |||||||||   ||||||||||||| | |||||||| ||||||||||||    
T  22819336 ctacctccttccaccacaaagaaacactccggcccccaaccgccaacctcctgtcctcctcaccataacgcgctaccaacaccctatacca 22819246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 41805323 - 41805282
Alignment:
Q  186 cctcctcaccatatctcgctaccagcaccctataccaaaaac 227  Q
    ||||||||||||||||||| |||| |||||||||||||||||    
T  41805323 cctcctcaccatatctcgccaccaacaccctataccaaaaac 41805282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 23054548 - 23054476
Alignment:
Q  174 ccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaacat 246  Q
    |||||||||||||||||||||||| ||| ||  ||| ||||||||||||||| ||  ||||||| || |||||    
T  23054548 ccaacctccctgcctcctcaccatgtctagccgccaacaccctataccaaaaccctcctctatcaactaacat 23054476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 20918524 - 20918594
Alignment:
Q  175 caacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaaca 245  Q
    |||||||||||||| ||||||||| |  | ||| |||||||||||||| |||||  |||||||||| ||||    
T  20918524 caacctccctgccttctcaccataacgagttactagcaccctataccacaaacctcctctatctactaaca 20918594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 258
Target Start/End: Complemental strand, 13553778 - 13553677
Alignment:
Q  157 actccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacac 256  Q
    |||||||||||| ||||||||||||||| |  |||| ||||| |  || || || || |||||||| || ||  |||||||||||||||| | |||||||    
T  13553778 actccggcccccaacctccaacctccctccaacctcgccataacgggcgactagaacactataccacaaccctactctatctaccaacatcctccaacac 13553679  T
Q  257 ca 258  Q
    ||    
T  13553678 ca 13553677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 39658972 - 39658919
Alignment:
Q  167 cctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctatac 220  Q
    |||||| |||||||||| |||||||||||||| | ||| |||| ||||||||||    
T  39658972 cctacccccaacctcccagcctcctcaccataccgcgccaccaacaccctatac 39658919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 12308699 - 12308647
Alignment:
Q  174 ccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaa 226  Q
    ||||||||| ||||||||||||||| || ||  ||| ||||||||||||||||    
T  12308699 ccaacctccatgcctcctcaccataccttgcagccaacaccctataccaaaaa 12308647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 2071944 - 2072151
Alignment:
Q  15 catcaccaagccacctgtcataccaaaagtaagtagacacaccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccat 114  Q
    ||||||||| |||||||||| ||||||||||||||   | |||||  |||||| ||||||| |||| ||| |||||||| | ||||||  | ||||| |     
T  2071944 catcaccaacccacctgtcagaccaaaagtaagtatgtaaaccatcccctacctttctcgacaccctctctgcaaaccagcccccctcggcctcacctac 2072043  T
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcacc 214  Q
    ||| ||||||||||||||||  ||| |||||||  | |||  |||||| ||||| ||||| ||||||| ||||||||||||||||||||| |||||||||    
T  2072044 cccgtccctaatcttcactaactccctccaccagcaagaaacactccgtcccccaacctctaacctccttgcctcctcaccatatctcgccaccagcacc 2072143  T
Q  215 ctatacca 222  Q
    ||||||||    
T  2072144 ctatacca 2072151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 258
Target Start/End: Complemental strand, 43516485 - 43516241
Alignment:
Q  14 acatcaccaagccacctgtcataccaaaagtaagtagacacaccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcaccca 113  Q
    ||||||||||||||| ||||||||||||||||||||      ||||  |||||  || |||| |||| ||| |||||||| | ||||||  | || || |    
T  43516485 acatcaccaagccacttgtcataccaaaagtaagtactagagccatctcctacttttttcgacaccctctctgcaaaccagcccccctctacatcgccta 43516386  T
Q  114 tcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcac 213  Q
     |||||||||||||||| ||||||||  |||||||||||||  ||||| |||||| |||||||||| ||| |||  ||||||||| | | |||| || ||    
T  43516385 ccccatccctaatcttcgctacttcccgccaccaagatgaaacactcctgcccccaacctccaaccgcccagccgtctcaccataccgcactactaggac 43516286  T
Q  214 cctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    ||||||||| |||||| |||||||  |||||||  ||||||||||    
T  43516285 cctataccataaaccacctctatccgccaacatctgccaacacca 43516241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 258
Target Start/End: Original strand, 9690927 - 9691069
Alignment:
Q  116 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 215  Q
    ||||||||||||||| |||  ||| ||||||||   |||  |||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||    
T  9690927 ccatccctaatcttcgctatctccctccaccaatgagaaacactccggcccccaacctccaacctcccagcctcctcaccatatctagctactagcaccc 9691026  T
Q  216 tataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||||||||| |||  |||||| |||||||  | |||||||||    
T  9691027 tataccaaaacccacatctatccaccaacaacctccaacacca 9691069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 52617497 - 52617407
Alignment:
Q  119 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctacca 209  Q
    |||||||||||| |||  ||| ||||||||||||||  ||||||||| |  |||||||||||| |||||||||||||||||||||| ||||    
T  52617497 tccctaatcttcgctatctccctccaccaagatgaaacactccggcctctaacctccaacctctctgcctcctcaccatatctcgccacca 52617407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 258
Target Start/End: Complemental strand, 56337132 - 56336993
Alignment:
Q  119 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctat 218  Q
    |||||||||||| |||  ||| |||||||||  |||  |||||| ||||| |||||||||| ||| |||||||||||||| |||||  | || |||||||    
T  56337132 tccctaatcttcgctatctccctccaccaagtagaaacactccgacccccaacctccaaccgcccagcctcctcaccatacctcgccgctagtaccctat 56337033  T
Q  219 accaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||| |||||  ||||||| |||||||  || ||||||||    
T  56337032 accacaaacctactctatccaccaacaaccgacaacacca 56336993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 233
Target Start/End: Original strand, 7098986 - 7099104
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcacc 214  Q
    |||||||||||||||||| || ||||||||||||   |||  ||||||||||||  ||||||||||| |  |||||||||||||||| |||| ||  |||    
T  7098986 cccatccctaatcttcacaacctccttccaccaaatagaaccactccggcccccatcctccaacctctcatcctcctcaccatatctagctatcaaaacc 7099085  T
Q  215 ctataccaaaaaccatctc 233  Q
    | |||||| ||||| ||||    
T  7099086 cgataccacaaaccctctc 7099104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 222
Target Start/End: Original strand, 36183045 - 36183148
Alignment:
Q  119 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctat 218  Q
    |||||||||||| |||  ||| |||||||||  |||  |||||||||||| |||||||||| |||  |||||||||||||||| || || || |||||||    
T  36183045 tccctaatcttcgctatctccctccaccaagtagaaacactccggcccccaacctccaaccgcccatcctcctcaccatatcttgccacaagtaccctat 36183144  T
Q  219 acca 222  Q
    ||||    
T  36183145 acca 36183148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 227
Target Start/End: Original strand, 38296258 - 38296322
Alignment:
Q  163 gccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 227  Q
    |||||| ||||||||||||||   | |||||||||||||||| |||| |||||||||||||||||    
T  38296258 gcccccaacctccaacctcccattcacctcaccatatctcgccaccaacaccctataccaaaaac 38296322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 258
Target Start/End: Complemental strand, 55725374 - 55725199
Alignment:
Q  83 tccgcaaaccaactcccctcatcgtcacccatcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctcc 182  Q
    ||||||||||||| | || || | || || |||||||| || ||| | ||||  ||| |||||||||| |||  ||||||||||||  ||||||| |  |    
T  55725374 tccgcaaaccaaccctccccaccctcgcctatcccatctctgatcatgactatctccctccaccaagaagaacaactccggcccccatcctccaaaccac 55725275  T
Q  183 ctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |  ||||| ||||||| || || |||| |||||||||||| || |||||||||||||| ||||  | |||||||||    
T  55725274 catcctccacaccatacctagccaccaacaccctataccataatccatctctatctactaacaacctccaacacca 55725199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 49925903 - 49925835
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccc 183  Q
    |||||||||||||||| | || |||  ||||||||| |||  |||||||||||| ||||||||||||||    
T  49925903 cccatccctaatcttccccacctcccgccaccaagaagaacaactccggcccccaacctccaacctccc 49925835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 3129528 - 3129482
Alignment:
Q  212 accctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    ||||||||||| |||||| ||||||| |||||||| |||||||||||    
T  3129528 accctataccacaaaccacctctatccaccaacatccgccaacacca 3129482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 23873015 - 23872969
Alignment:
Q  212 accctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||| |||||| |||||| |||||||||||||||| |||||||||||    
T  23873015 acccgataccacaaaccacctctatctaccaacatccgccaacacca 23872969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 2365552 - 2365641
Alignment:
Q  157 actccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaacat 246  Q
    |||||| |||||  ||| |||||||||| ||||||||||||| |  || |||| |||||||||||| |||||  ||||||| || |||||    
T  2365552 actccgacccccatccttcaacctccctacctcctcaccataacgagcaaccaacaccctataccataaacctcctctatcaactaacat 2365641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 9777896 - 9777981
Alignment:
Q  137 tccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctatacca 222  Q
    |||||||||||  | |||  |||||||||||| |||  |||||||||  ||||||||| ||| | |||||||| ||||||||||||    
T  9777896 tccttccaccacaaagaaacactccggcccccaaccgtcaacctcccatcctcctcactataacgcgctaccaacaccctatacca 9777981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 29328358 - 29328301
Alignment:
Q  170 acctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 227  Q
    ||||||||||||||  ||||||||||||| ||||| ||||  ||| ||||||||||||    
T  29328358 acctccaacctccccacctcctcaccatacctcgcgaccaagaccttataccaaaaac 29328301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 41382519 - 41382560
Alignment:
Q  157 actccggccccctacctccaacctccctgcctcctcaccata 198  Q
    |||||||||||| |||||||||| ||| ||||||||||||||    
T  41382519 actccggcccccaacctccaaccgcccagcctcctcaccata 41382560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 19114940 - 19115008
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccc 183  Q
    ||||||||||||| || |||| |||  ||||||||| |||  |||| ||||||| ||||||||||||||    
T  19114940 cccatccctaatcctccctacctcccgccaccaagaagaacaactctggcccccaacctccaacctccc 19115008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 55464463 - 55464379
Alignment:
Q  161 cggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaaca 245  Q
    |||||||| ||  ||||||| |||||| ||||||| || |  || ||||| ||||||||||| |||||| |||||||||| ||||    
T  55464463 cggcccccaactgccaacctacctgccacctcaccgtaccgagcaaccagtaccctataccacaaaccacctctatctactaaca 55464379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 116 - 258
Target Start/End: Original strand, 6823916 - 6824058
Alignment:
Q  116 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 215  Q
    ||||||||||||||| |||| ||||||||||| | ||||  |||||||||||| |||||||||||||||||||||||| ||||||||||  |||  ||||    
T  6823916 ccatccctaatcttcgctacctccttccaccacggtgaaacactccggcccccaacctccaacctccctgcctcctcaacatatctcgccgccaaaaccc 6824015  T
Q  216 tataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    ||||||| || ||  ||||||| |||||||||| |||||||||    
T  6824016 tataccagaaccccgctctatccaccaacattctccaacacca 6824058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 258
Target Start/End: Original strand, 11196855 - 11196998
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcacc 214  Q
    |||||||||||||||  ||||||||  |||||||||||||  |||||||||||| |||||||||| |||  |   ||||||||| | ||||||||| |||    
T  11196855 cccatccctaatcttagctacttcccgccaccaagatgaaacactccggcccccaacctccaaccgcccaactgtctcaccataccgcgctaccagaacc 11196954  T
Q  215 ctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||||||| || ||  ||||||| |||| |||||||||||||||    
T  11196955 ctataccataacccgcctctatccaccatcattcgccaacacca 11196998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 227
Target Start/End: Original strand, 43310790 - 43310875
Alignment:
Q  142 ccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 227  Q
    ||||||||| |||  |||||||||||| ||||||||||||||  ||||||| ||||||||||| |||| |||||||||||| ||||    
T  43310790 ccaccaagaagaaccactccggcccccaacctccaacctcccatcctcctcgccatatctcgccaccaacaccctataccacaaac 43310875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 26146761 - 26146831
Alignment:
Q  157 actccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 227  Q
    |||||||||||| ||||||||||||||  ||||||| ||||||||||| |||| |||||||||||| ||||    
T  26146761 actccggcccccaacctccaacctcccatcctcctcgccatatctcgccaccaacaccctataccacaaac 26146831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 10689087 - 10689170
Alignment:
Q  143 caccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 227  Q
    |||||||| |||  |||||||||||  |||||||||||||  ||||| |||||||||||| | |||| |||||||||||| ||||    
T  10689087 caccaagaagaaccactccggcccca-acctccaacctcctagcctcatcaccatatctcaccaccaacaccctataccataaac 10689170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 245
Target Start/End: Original strand, 7301181 - 7301307
Alignment:
Q  119 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctat 218  Q
    |||||||||||| |||  ||| |||||||||| ||   |||  | ||||| |||||||||||| ||| ||||| ||| || ||| | |||| ||||||||    
T  7301181 tccctaatcttcgctatctccctccaccaagaagagacactatgtcccccaacctccaacctctctgtctccttaccgtacctcaccaccaacaccctat 7301280  T
Q  219 accaaaaaccatctctatctaccaaca 245  Q
    || |||| ||| ||||||| |||||||    
T  7301281 actaaaacccacctctatccaccaaca 7301307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 256
Target Start/End: Complemental strand, 9668641 - 9668501
Alignment:
Q  116 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 215  Q
    ||||| |||||| || | || ||| |||||||| | |||  |||||||||||| ||||||||||||||| |  |||| ||||| |  || || || || |    
T  9668641 ccatctctaatcctccccacctccctccaccaataagaacaactccggcccccaacctccaacctccctccaacctcgccataacgggcgactagaacac 9668542  T
Q  216 tataccaaaaaccatctctatctaccaacattcgccaacac 256  Q
    ||||||| || ||  |||||||||||||||| | |||||||    
T  9668541 tataccacaaccctactctatctaccaacatcctccaacac 9668501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 15018181 - 15018249
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccc 183  Q
    ||||||||||||| || |||| |||  ||||||||| |||  ||| |||||||| ||||||||||||||    
T  15018181 cccatccctaatcctccctacctcccgccaccaagaagaacaacttcggcccccaacctccaacctccc 15018249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 116 - 255
Target Start/End: Original strand, 6593 - 6732
Alignment:
Q  116 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 215  Q
    ||||||||||||||| |||| ||  ||||||| ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||| || |  ||||    
T  6593 ccatccctaatcttcgctacctctctccaccatgatgaagcactccagcccccaacctccaacctccctgcctcctcaccatatctcgccactaaaaccc 6692  T
Q  216 tataccaaaaaccatctctatctaccaacattcgccaaca 255  Q
    ||||||| |||||  |||  ||||||||||| | ||||||    
T  6693 tataccacaaaccgcctcgctctaccaacatcctccaaca 6732  T

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Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 113 - 246
Target Start/End: Original strand, 25193590 - 25193723
Alignment:
Q  113 atcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagca 212  Q
    |||||||||||||||||| |||  ||| |||||||| | |||  ||||||||||||||||||||||||||| |||||||||||||| | | | |||| ||    
T  25193590 atcccatccctaatcttcgctatctccctccaccaataagaatcactccggccccctacctccaacctcccagcctcctcaccataccgcaccaccaaca 25193689  T
Q  213 ccctataccaaaaaccatctctatctaccaacat 246  Q
    ||| |||||| || ||||||||||| ||||||||    
T  25193690 cccgataccagaacccatctctatccaccaacat 25193723  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 29721553 - 29721439
Alignment:
Q  108 cacccatcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctac 207  Q
    |||| |||||||||||||||||| |||  ||| |||||||| | ||   ||||||||||||||||||||||||||| | |||||||||||||||||| ||    
T  29721553 caccaatcccatccctaatcttcgctatctccctccaccaataagagacactccggccccctacctccaacctcccaggctcctcaccatatctcgccac 29721454  T
Q  208 cagcaccctatacca 222  Q
    ||  |||||||||||    
T  29721453 caaaaccctatacca 29721439  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 258
Target Start/End: Original strand, 15439632 - 15439764
Alignment:
Q  119 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctat 218  Q
    |||||||||||||||||||||||||||||| | |||   |||||||||||       |||||||||||||||||||||||   |||  ||| ||||||||    
T  15439632 tccctaatcttcactacttccttccaccaaaaagaaccgctccggccccc-------aacctccctgcctcctcaccatactgcgcccccaacaccctat 15439724  T
Q  219 accaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||| |||||||||||||  ||||||||  ||||||||||    
T  15439725 accataaaccatctctattcaccaacatctgccaacacca 15439764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 258
Target Start/End: Original strand, 15530936 - 15531068
Alignment:
Q  119 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctat 218  Q
    |||||||||||||||||||||||||||||| | |||   |||||||||||       |||||||||||||||||||||||   |||  ||| ||||||||    
T  15530936 tccctaatcttcactacttccttccaccaaaaagaaccgctccggccccc-------aacctccctgcctcctcaccatactgcgcccccaacaccctat 15531028  T
Q  219 accaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||| |||||||||||||  ||||||||  ||||||||||    
T  15531029 accataaaccatctctattcaccaacatctgccaacacca 15531068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 256
Target Start/End: Original strand, 6245593 - 6245727
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcacc 214  Q
    |||||||||||||||||||||||||  |||||||||||||  ||||||||||       |||||||||| |||| ||||||||| |  ||||| || |||    
T  6245593 cccatccctaatcttcactacttcccgccaccaagatgaaacactccggccc-------ccaacctcccagccttctcaccataacatgctacaagaacc 6245685  T
Q  215 ctataccaaaaaccatctctatctaccaacattcgccaacac 256  Q
    |||||||| |  ||| ||||||| |||||||| |||||||||    
T  6245686 ctataccagagcccacctctatccaccaacatccgccaacac 6245727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 258
Target Start/End: Original strand, 36025026 - 36025168
Alignment:
Q  116 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 215  Q
    ||||||||||||||| |||  ||  ||||| |||  |||  ||||||| |||| |||||||||| ||| |||||||||||||||||||| ||||  || |    
T  36025026 ccatccctaatcttcgctaactctctccacaaagtggaaacactccggtccccaacctccaaccgcccagcctcctcaccatatctcgccaccaaaactc 36025125  T
Q  216 tataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    ||||||| || ||  ||||||| |||||||| |||||||||||    
T  36025126 tataccataaccctcctctatccaccaacatccgccaacacca 36025168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 255
Target Start/End: Complemental strand, 37165753 - 37165617
Alignment:
Q  119 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctat 218  Q
    |||||||||||| |||  ||| |||||||||  |||  |||||||||||| |||||||||| |||  ||||||| ||||||||||| ||||| |||||||    
T  37165753 tccctaatcttcgctatctccctccaccaagtagaaacactccggcccccaacctccaaccgcccatcctcctcgccatatctcgccaccagtaccctat 37165654  T
Q  219 accaaaaaccatctctatctaccaacattcgccaaca 255  Q
    |||| || ||  ||||||| || ||||| | ||||||    
T  37165653 accacaagcctcctctatccactaacatcctccaaca 37165617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 258
Target Start/End: Original strand, 12341072 - 12341214
Alignment:
Q  116 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccc 215  Q
    ||||||||||||||| |||  | | ||||||||   |||  |||||||| ||| |||||||||| ||| |||||||||||||| ||||| ||||| ||||    
T  12341072 ccatccctaatcttcgctatctacctccaccaattagaaacactccggctcccaacctccaaccgcccagcctcctcaccatacctcgccaccagtaccc 12341171  T
Q  216 tataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    || |||| || ||  ||||||| || ||||| | |||||||||    
T  12341172 taaaccacaaccctcctctatccactaacatcctccaacacca 12341214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 18187672 - 18187793
Alignment:
Q  137 tccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctat 236  Q
    |||||||||||  | |||  |||||||||| | ||  |||||| |||| |||||||||||||||   | |||||| |||||||||| |||||| ||||||    
T  18187672 tccttccaccacaaagaaccactccggccctcaactgccaaccgccctacctcctcaccatatcaatcaaccagctccctataccacaaaccacctctat 18187771  T
Q  237 ctaccaacattcgccaacacca 258  Q
    |||| |||| || |||||||||    
T  18187772 ctactaacaatctccaacacca 18187793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 36492928 - 36492997
Alignment:
Q  158 ctccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 227  Q
    ||||||||||| ||| ||||||||||  ||||||||||||| ||||| |||| |||||||||||| ||||    
T  36492928 ctccggcccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccctataccataaac 36492997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 12332411 - 12332461
Alignment:
Q  174 ccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaa 224  Q
    ||||||||||  ||||||||||||||||||| |||| ||||||||||||||    
T  12332411 ccaacctcccatcctcctcaccatatctcgccaccaacaccctataccaaa 12332461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 6901413 - 6901481
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccc 183  Q
    |||||| | |||| || ||||||||| ||||||||| |||  ||| |||||||| ||||||||||||||    
T  6901413 cccatcacgaatcctccctacttcctgccaccaagaagaaccacttcggcccccaacctccaacctccc 6901481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 183
Target Start/End: Original strand, 17659339 - 17659403
Alignment:
Q  119 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccc 183  Q
    |||||||||  | |||| ||| |||||||||| |||  |||||||||||| ||||||||||||||    
T  17659339 tccctaatccgccctacctccctccaccaagaagaacaactccggcccccaacctccaacctccc 17659403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 36157658 - 36157726
Alignment:
Q  115 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccc 183  Q
    |||||| |||||| || | || ||| |||||||||| |||  |||||||||||| ||||||||||||||    
T  36157658 cccatctctaatcctcgccacctccctccaccaagaagaacaactccggcccccaacctccaacctccc 36157726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 63876 - 63792
Alignment:
Q  174 ccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    |||||||||||||||||||| |||||||||| |||| ||| ||||||||||||  |||| | || | |||||| |||||||||||    
T  63876 ccaacctccctgcctcctcatcatatctcgccaccaacactctataccaaaaattatctttgtccatcaacatccgccaacacca 63792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 67611 - 67694
Alignment:
Q  142 ccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaa 225  Q
    ||||||||| |||  ||||| |||||| ||||||||||||||||||||||||||||| || |  | || |||||||||||||||    
T  67611 ccaccaagaagaaccactccagcccccaacctccaacctccctgcctcctcaccatacctagaaatcaacaccctataccaaaa 67694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 55208 - 55278
Alignment:
Q  157 actccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 227  Q
    |||||||||||| |||||||||||| |  ||||||| ||||||||||| |||| |||||||||||| ||||    
T  55208 actccggcccccaacctccaacctctcatcctcctcgccatatctcgccaccaacaccctataccataaac 55278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 143426 - 143356
Alignment:
Q  157 actccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccctataccaaaaac 227  Q
    |||||||||||| |||||||||||| |  ||||||| ||||||||||| |||| |||||||||||| ||||    
T  143426 actccggcccccaacctccaacctctcatcctcctcgccatatctcgccaccaacaccctataccataaac 143356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 4095 - 4049
Alignment:
Q  212 accctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    ||||||||||| |||||||||||||| |||||||| |||||||||||    
T  4095 accctataccacaaaccatctctatccaccaacatccgccaacacca 4049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 134393 - 134347
Alignment:
Q  212 accctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    ||||||||||| |||||||||||||| |||||||| |||||||||||    
T  134393 accctataccacaaaccatctctatccaccaacatccgccaacacca 134347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 312220 - 312174
Alignment:
Q  212 accctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    ||||||||||| |||||||||||||| |||||||| |||||||||||    
T  312220 accctataccacaaaccatctctatccaccaacatccgccaacacca 312174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 327674 - 327628
Alignment:
Q  212 accctataccaaaaaccatctctatctaccaacattcgccaacacca 258  Q
    ||||||||||| |||||||||||||| |||||||| |||||||||||    
T  327674 accctataccacaaaccatctctatccaccaacatccgccaacacca 327628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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