View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_1D_low_26 (Length: 254)
Name: NF7577_1D_low_26
Description: NF7577_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_1D_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 16842734 - 16842973
Alignment:
| Q |
9 |
tgttggaatatataaccagatgatgaaaagtgatgctgacgagaagaagctgaacaagcacattgtttgtacaaggatcgatatttatagtgttatggga |
108 |
Q |
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| T |
16842734 |
tgttggaatatataaccagatgatgaaaagtgatgctgacgagaagaagctgaacaagcacattgtttgtacaaggatcgatatttatagtgttatggga |
16842833 |
T |
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| Q |
109 |
cgcttcaaagatgcagagatgttacatctaaagttgaagatgtcttcttcaccaaattcgttggatgtgattgcatatagcattgttgtgcggaggttgt |
208 |
Q |
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| T |
16842834 |
cgcttcaaagatgcagagatgttacatctaaagttgaagatgtcttcttcaccaaattcgttggatgtgattgcatatagcattgttgtgcggaggttgt |
16842933 |
T |
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| Q |
209 |
attttatgcctaagaaacaaggcttggttgatgtcattac |
248 |
Q |
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| T |
16842934 |
attttatgcctaagaaacaaggcttggttgatgtcattac |
16842973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 24209646 - 24209839
Alignment:
| Q |
9 |
tgttggaatatataaccagatgatgaaaagtgatgctgacgagaagaagctgaacaagcacattgtttgtacaaggatcgatatttatagtgttatggga |
108 |
Q |
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| T |
24209646 |
tgttggaatatataaccagatgatgaaaagtaatgctgacgagaagaagctgaacaagcacattgtttgtacaatgatcgatatttatagtgtcatggga |
24209745 |
T |
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| Q |
109 |
cgcttcaaagatgcagagatgttacatctaaagttgaagatgtcttcttcaccaaattcgttggatgtgattgcatatagcattgttgtgcgga |
202 |
Q |
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| T |
24209746 |
tgcttcaaagatgcagagatgttgtatctaaagttgaagaagtcttcttcaccaaattcgttggatatgattgcatatagcattgttgtgcgga |
24209839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 200 - 245
Target Start/End: Original strand, 24210191 - 24210236
Alignment:
| Q |
200 |
ggaggttgtattttatgcctaagaaacaaggcttggttgatgtcat |
245 |
Q |
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| T |
24210191 |
ggaggttgtattttatggctaagaaacaaggcttggttgatgtcat |
24210236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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