View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7577_1D_low_28 (Length: 252)
Name: NF7577_1D_low_28
Description: NF7577_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_1D_low_28 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 31564624 - 31564462
Alignment:
| Q |
16 |
atcaatccacaagaggcaaaacaatatgagaagatgggcaaaatggaagtataattcattttttctcttttacat------gtaaaaattgaaatacatg |
109 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31564624 |
atcaatccacaagaggcaaaacaatatgaaaagatgggcaaaatggaagtataattaattttttctcttttacatttacatgtaaaaattgaaatacatg |
31564525 |
T |
|
| Q |
110 |
tataaattcaaatctgtctaacatatttacttctattaggtgtagaaaaattagaatagaaac |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
31564524 |
tataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaac |
31564462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 171
Target Start/End: Original strand, 33416366 - 33416484
Alignment:
| Q |
55 |
aaaatggaagtataat--tcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattaggtgt |
152 |
Q |
| |
|
|||||||||||||| | || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | | | |
|
|
| T |
33416366 |
aaaatggaagtatattcatcttttcttctcttttacatgtaaaaactgaaatacatgtataaattcaaatctgtccaacatatttacttctatttgatat |
33416465 |
T |
|
| Q |
153 |
agaaaaattagaatagaaa |
171 |
Q |
| |
|
|||||||| ||||| |||| |
|
|
| T |
33416466 |
agaaaaatgagaattgaaa |
33416484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 165 - 238
Target Start/End: Complemental strand, 24727569 - 24727496
Alignment:
| Q |
165 |
atagaaacggtaacaaaaaataagctcaactcaaagtaaaaacaagattattaaagtgaatgttatacttgatg |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24727569 |
atagaaacggtaacaaaaaataagctcaactcaaagtaaaaacaagattattaaagtgaatgttatacttgatg |
24727496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 56 - 172
Target Start/End: Complemental strand, 30653360 - 30653245
Alignment:
| Q |
56 |
aaatggaagtataattcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattaggtgtaga |
155 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |||||| | |||| ||| || |
|
|
| T |
30653360 |
aaatggaagtataatttattttttctcttttacatgtaaaaaccgaaagacatgtataagttcaaatctgtctaacataattactt-tgttagatgttga |
30653262 |
T |
|
| Q |
156 |
aaaattagaatagaaac |
172 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
30653261 |
aaaattagaatagaaac |
30653245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 42419785 - 42419827
Alignment:
| Q |
170 |
aacggtaacaaaaaataagctcaactcaaagtaaaaacaagat |
212 |
Q |
| |
|
|||| |||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
42419785 |
aacgataacaacaaataagctcaactcaaaataaaaacaagat |
42419827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University