View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_1D_low_30 (Length: 242)
Name: NF7577_1D_low_30
Description: NF7577_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_1D_low_30 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 52711034 - 52711252
Alignment:
| Q |
19 |
ttatttttgagacggacaatagaaggctccatactataaatacaaaaatgtttagtcaacggcaatctgaccatgattgcgaaggaaaactacaatgtta |
118 |
Q |
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| T |
52711034 |
ttatttttgagacggacaatagaaggctccatactataaatacaaaaatgtttagtcaacggcaatctgaccatgattgcgaaagaaaactacaatgt-- |
52711131 |
T |
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| Q |
119 |
tgtcacaatcaaattattaataccctaaatgcttgtggagcttccatttgttaaccaagtttgtgccggccagcctacattatttgttacagccataaat |
218 |
Q |
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| T |
52711132 |
---cacaatcaaattattaataccctaaatgcttgtggagcttccatttgttaaccaagtttgtgccggccagcctacattatttgttacagccataaat |
52711228 |
T |
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| Q |
219 |
caattgtaacccaaataaaaatga |
242 |
Q |
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| T |
52711229 |
caattgtaacccaaataaaaatga |
52711252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 134 - 242
Target Start/End: Original strand, 52720012 - 52720120
Alignment:
| Q |
134 |
attaataccctaaatgcttgtggagcttccatttgttaaccaagtttgtgccggccagcctacattatttgttacagccataaatcaattgtaacccaaa |
233 |
Q |
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| T |
52720012 |
attaataccctaaatgcctgtgaagcctccatttgttaaccaagtttgtgccagccagcctacattatttgttacagccataaatcaactgtaacccaaa |
52720111 |
T |
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| Q |
234 |
taaaaatga |
242 |
Q |
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| T |
52720112 |
taaaaatga |
52720120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 52718054 - 52718132
Alignment:
| Q |
38 |
tagaaggctccatactataaatacaaaaatgtttagtcaacggcaatctgaccatgattgcgaaggaaaactacaatgt |
116 |
Q |
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| T |
52718054 |
tagaaagccccatactataaatataaaaatgattagtcaacggtaatctgaccatgattgcgaaagaaaactacaatgt |
52718132 |
T |
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