View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7577_1D_low_31 (Length: 239)

Name: NF7577_1D_low_31
Description: NF7577_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7577_1D_low_31
NF7577_1D_low_31
[»] chr4 (11 HSPs)
chr4 (35-226)||(28948426-28948610)
chr4 (35-227)||(22703070-22703255)
chr4 (35-227)||(22990862-22991047)
chr4 (43-162)||(22698733-22698845)
chr4 (43-162)||(22981685-22981797)
chr4 (43-162)||(22995272-22995384)
chr4 (83-166)||(56560508-56560591)
chr4 (83-166)||(24036214-24036297)
chr4 (82-166)||(16565539-16565623)
chr4 (82-166)||(15618844-15618928)
chr4 (87-132)||(52056997-52057042)
[»] scaffold0009 (1 HSPs)
scaffold0009 (35-227)||(200042-200227)
[»] chr8 (6 HSPs)
chr8 (43-162)||(19648194-19648306)
chr8 (83-166)||(193387-193470)
chr8 (83-166)||(720991-721074)
chr8 (83-166)||(882098-882181)
chr8 (83-166)||(30983223-30983306)
chr8 (83-166)||(44240122-44240205)
[»] chr1 (6 HSPs)
chr1 (43-162)||(4345989-4346101)
chr1 (83-166)||(46407488-46407571)
chr1 (83-166)||(50978939-50979022)
chr1 (83-159)||(35606336-35606412)
chr1 (82-166)||(35569906-35569990)
chr1 (84-124)||(50979027-50979067)
[»] chr3 (4 HSPs)
chr3 (44-162)||(7011653-7011764)
chr3 (83-166)||(51125383-51125466)
chr3 (83-166)||(52692542-52692625)
chr3 (82-139)||(16246819-16246876)
[»] chr5 (4 HSPs)
chr5 (43-162)||(22809984-22810096)
chr5 (83-166)||(33232457-33232540)
chr5 (83-166)||(7072032-7072115)
chr5 (82-166)||(22481515-22481599)
[»] chr2 (6 HSPs)
chr2 (43-162)||(23360945-23361058)
chr2 (83-166)||(13895999-13896082)
chr2 (83-166)||(14036616-14036699)
chr2 (83-166)||(14380107-14380190)
chr2 (82-166)||(5916944-5917028)
chr2 (82-166)||(36311597-36311681)
[»] chr6 (4 HSPs)
chr6 (83-166)||(21515703-21515786)
chr6 (83-166)||(30019220-30019303)
chr6 (82-166)||(16547456-16547540)
chr6 (81-159)||(17830767-17830845)
[»] chr7 (3 HSPs)
chr7 (81-166)||(37638703-37638788)
chr7 (81-166)||(10372714-10372799)
chr7 (82-127)||(12963342-12963387)
[»] scaffold0394 (1 HSPs)
scaffold0394 (88-159)||(6607-6678)


Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 35 - 226
Target Start/End: Original strand, 28948426 - 28948610
Alignment:
Q  35 gaacctgcgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcacctta 134  Q
    ||||||| ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28948426 gaacctgtgtcttaattgtgaatttaggcatgcgtcgtagaatt-------gcaaatctattcttccatacaccaaaagttctttctattgtgcacctta 28948518  T
Q  135 cacttaagtgataataattaaatacctcattactgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgt 226  Q
     |||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28948519 aacttgagtgataataattgaatacctcattattgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgt 28948610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 35 - 227
Target Start/End: Original strand, 22703070 - 22703255
Alignment:
Q  35 gaacctgcgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcacctta 134  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22703070 gaacctgtgtcataattgtgaatttaggcatgcgtcgtagaatt-------gcaaatctattcttccatacaccaaaagttctttctattgggcacctta 22703162  T
Q  135 cacttaagtgataataattaaatacctcattactgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtc 227  Q
     |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22703163 aacttgagtgataataattgaatacctcattattgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtc 22703255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 35 - 227
Target Start/End: Complemental strand, 22991047 - 22990862
Alignment:
Q  35 gaacctgcgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcacctta 134  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| ||||||||    
T  22991047 gaacctgtgtcataattgtgaatttaggcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgggcacctta 22990955  T
Q  135 cacttaagtgataataattaaatacctcattactgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtc 227  Q
     |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22990954 aacttgagtgataataattgaatacctcattattgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtc 22990862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 43 - 162
Target Start/End: Complemental strand, 22698845 - 22698733
Alignment:
Q  43 gtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaag 142  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  22698845 gtcttaattgtgaatttaggcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgag 22698753  T
Q  143 tgataataattaaatacctc 162  Q
    ||||||||||| ||||||||    
T  22698752 tgataataattgaatacctc 22698733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 43 - 162
Target Start/End: Original strand, 22981685 - 22981797
Alignment:
Q  43 gtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaag 142  Q
    ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  22981685 gtcttaattgtgaatttaggcatgcgtcgtagaatt-------gcaaatctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgag 22981777  T
Q  143 tgataataattaaatacctc 162  Q
    ||||||||||| ||||||||    
T  22981778 tgataataattgaatacctc 22981797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 43 - 162
Target Start/End: Original strand, 22995272 - 22995384
Alignment:
Q  43 gtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaag 142  Q
    ||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  22995272 gtcttaattgtgaatttaggcatgcgtcgtagaatt-------gcaaatctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgag 22995364  T
Q  143 tgataataattaaatacctc 162  Q
    ||||||||||| ||||||||    
T  22995365 tgataataattgaatacctc 22995384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 56560591 - 56560508
Alignment:
Q  83 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  56560591 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 56560508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 24036214 - 24036297
Alignment:
Q  83 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  24036214 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 24036297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 16565623 - 16565539
Alignment:
Q  82 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| | ||| ||||||    
T  16565623 aattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgattacttcatta 16565539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 15618928 - 15618844
Alignment:
Q  82 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    |||||||||||||||||||||||| ||||||||| |||| |||||||| | || |||| ||||||| ||||| ||||| ||||||    
T  15618928 aattgcaaatctattcttccataccccaaaagttttttcaattgtgcatcctaaacttgagtgatagtaattgaatacttcatta 15618844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 52056997 - 52057042
Alignment:
Q  87 caaatctattcttccatacaccaaaagttctttctattgtgcacct 132  Q
    ||||||| ||||||||||| | ||||||| ||||||||||||||||    
T  52056997 caaatctgttcttccataccctaaaagttatttctattgtgcacct 52057042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 35 - 227
Target Start/End: Original strand, 200042 - 200227
Alignment:
Q  35 gaacctgcgtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcacctta 134  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  200042 gaacctgtgtcataattgtgaatttaggcatgcgtcgtagaatt-------gcaaatctattcttccatacaccaaaagttctttctattgggcacctta 200134  T
Q  135 cacttaagtgataataattaaatacctcattactgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtc 227  Q
     |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  200135 aacttgagtgataataattgaatacctcattattgaagacgatgaaatattgaaacttgagtgcaccttaaacatgtttgcccaactgatgtc 200227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 43 - 162
Target Start/End: Complemental strand, 19648306 - 19648194
Alignment:
Q  43 gtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaag 142  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  19648306 gtcttaattgtgaatttaggcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgag 19648214  T
Q  143 tgataataattaaatacctc 162  Q
    ||||||||||| ||||||||    
T  19648213 tgataataattgaatacctc 19648194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 193470 - 193387
Alignment:
Q  83 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  193470 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 193387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 721074 - 720991
Alignment:
Q  83 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  721074 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 720991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 882181 - 882098
Alignment:
Q  83 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  882181 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 882098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 30983223 - 30983306
Alignment:
Q  83 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  30983223 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 30983306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 44240205 - 44240122
Alignment:
Q  83 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||| | |||| |||| ||||||||||||||||||| ||||||    
T  44240205 attgcaaatatgttcttccataccccaaaagttctttctattgtgtatcttaaacttgagtgataataattaaatacttcatta 44240122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 43 - 162
Target Start/End: Complemental strand, 4346101 - 4345989
Alignment:
Q  43 gtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaag 142  Q
    ||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  4346101 gtcttaattgtgaatttaggcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgag 4346009  T
Q  143 tgataataattaaatacctc 162  Q
    ||||||||||| ||||||||    
T  4346008 tgataataattgaatacctc 4345989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 46407571 - 46407488
Alignment:
Q  83 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  46407571 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 46407488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 50978939 - 50979022
Alignment:
Q  83 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  50978939 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 50979022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 35606412 - 35606336
Alignment:
Q  83 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatac 159  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||||||||| |||| |||||||||||||||||||    
T  35606412 attgcaaatctgttcttccataccccaacagttctttctattgtgcaccttaaacttgagtgataataattaaatac 35606336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 35569906 - 35569990
Alignment:
Q  82 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    |||||||||| ||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  35569906 aattgcaaatttattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 35569990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 50979027 - 50979067
Alignment:
Q  84 ttgcaaatctattcttccatacaccaaaagttctttctatt 124  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  50979027 ttgcaaatctgttcttccataccccaaaagttctttctatt 50979067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 44 - 162
Target Start/End: Complemental strand, 7011764 - 7011653
Alignment:
Q  44 tcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagt 143  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  7011764 tcttaattgtgaatttaggcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgagt 7011672  T
Q  144 gataataattaaatacctc 162  Q
    |||||||||| ||||||||    
T  7011671 gataataattgaatacctc 7011653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 51125383 - 51125466
Alignment:
Q  83 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  51125383 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 51125466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 52692625 - 52692542
Alignment:
Q  83 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  52692625 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 52692542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 16246819 - 16246876
Alignment:
Q  82 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacactt 139  Q
    |||||||||||||||||||||| |   |||||||||||| |||||||| |||| ||||    
T  16246819 aattgcaaatctattcttccatgccttaaaagttctttcaattgtgcatcttaaactt 16246876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 162
Target Start/End: Complemental strand, 22810096 - 22809984
Alignment:
Q  43 gtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaag 142  Q
    ||||||||||||||||||| ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  22810096 gtcttaattgtgaatttagtcatgcgtcgtagaattgcaaat-------ctattcttccatacaccaaaagttctttctattgtgcaccttaaacttgag 22810004  T
Q  143 tgataataattaaatacctc 162  Q
    ||||||||||| ||||||||    
T  22810003 tgataataattgaatacctc 22809984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 33232540 - 33232457
Alignment:
Q  83 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  33232540 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 33232457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 7072032 - 7072115
Alignment:
Q  83 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    ||||||||| | ||||||||||| |||||||||||||||||||||||||||| | || ||||||||||||||||||| ||||||    
T  7072032 attgcaaatatgttcttccataccccaaaagttctttctattgtgcaccttaaatttgagtgataataattaaatacttcatta 7072115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 22481599 - 22481515
Alignment:
Q  82 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  22481599 aattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 22481515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 43 - 162
Target Start/End: Original strand, 23360945 - 23361058
Alignment:
Q  43 gtcttaattgtgaatttaggcatgcgtcgtagaattgcaaattgcaaatctattcttccatacaccaaaa-gttctttctattgtgcaccttacacttaa 141  Q
    ||||||||||||||||||| ||||||||||||||||||||||       |||||||| |||||||||||| |||||||||||||||||||||| |||| |    
T  23360945 gtcttaattgtgaatttagtcatgcgtcgtagaattgcaaat-------ctattctttcatacaccaaaaagttctttctattgtgcaccttaaacttga 23361037  T
Q  142 gtgataataattaaatacctc 162  Q
    |||||||||||| ||||||||    
T  23361038 gtgataataattgaatacctc 23361058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 13896082 - 13895999
Alignment:
Q  83 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  13896082 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 13895999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 14036699 - 14036616
Alignment:
Q  83 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  14036699 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 14036616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 14380190 - 14380107
Alignment:
Q  83 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  14380190 attgcaaatctgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 14380107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 5916944 - 5917028
Alignment:
Q  82 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  5916944 aattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 5917028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 36311681 - 36311597
Alignment:
Q  82 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  36311681 aattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 36311597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 21515703 - 21515786
Alignment:
Q  83 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    ||||||||| | ||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||    
T  21515703 attgcaaatatgttcttccataccccaaaagttctttctattgtgcaccttaaacttgagtgataataattaaatacttcatta 21515786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 30019303 - 30019220
Alignment:
Q  83 attgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    ||||||||| | ||||||||||| |||||||||||||||||||||||||||| |||  ||||||||||||||||||| ||||||    
T  30019303 attgcaaatatgttcttccataccccaaaagttctttctattgtgcaccttaaactagagtgataataattaaatacttcatta 30019220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 16547540 - 16547456
Alignment:
Q  82 aattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  16547540 aattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 16547456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 17830767 - 17830845
Alignment:
Q  81 aaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatac 159  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| |||| || ||||| |||||    
T  17830767 aaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtggtagtaattgaatac 17830845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 37638788 - 37638703
Alignment:
Q  81 aaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  37638788 aaattgcaaatctattcttccatacaccaaaagttctttcaattgtgcatcttaaacttgagtgatagtaattgaatacttcatta 37638703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 10372714 - 10372799
Alignment:
Q  81 aaattgcaaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatacctcatta 166  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| |||| || ||||  ||||| ||||||    
T  10372714 aaattgcaaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtggtagtaatcgaatacttcatta 10372799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 12963387 - 12963342
Alignment:
Q  82 aattgcaaatctattcttccatacaccaaaagttctttctattgtg 127  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||    
T  12963387 aattgcaaatctattcttccataccccaaaagttctttcaattgtg 12963342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 6607 - 6678
Alignment:
Q  88 aaatctattcttccatacaccaaaagttctttctattgtgcaccttacacttaagtgataataattaaatac 159  Q
    |||||||||||||||||| |||||||||||||| |||||||| |||| |||| |||| || ||||| |||||    
T  6607 aaatctattcttccataccccaaaagttctttcaattgtgcatcttaaacttgagtggtagtaattgaatac 6678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University