View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_1D_low_34 (Length: 235)
Name: NF7577_1D_low_34
Description: NF7577_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_1D_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35443356 - 35443393
Alignment:
| Q |
1 |
gcattgcggatccacttgacgtatcgcaaatattagag |
38 |
Q |
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| T |
35443356 |
gcattgcggatccacttgacgtatcgcaaatattagag |
35443393 |
T |
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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 35443538 - 35443575
Alignment:
| Q |
197 |
ataaaattatatattcaaggtacaaaatcaaattattt |
234 |
Q |
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| T |
35443538 |
ataaaattatatattcaatgtacaaaatcaaattattt |
35443575 |
T |
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