View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_1D_low_39 (Length: 223)
Name: NF7577_1D_low_39
Description: NF7577_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_1D_low_39 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 37705504 - 37705299
Alignment:
| Q |
18 |
atcatgggggagaatgtaatttgttttgtagcttgcactgaacaaacatcaatcaagtcacccacttagtcgtaaatataagaaatgtggtccatgatga |
117 |
Q |
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| T |
37705504 |
atcatgggggagaatgtaatttgttttgtagcttgcactgaacaaacatcaatcaagtcacccacttagtcgtaaatataagaaatgtggtccatgatga |
37705405 |
T |
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| Q |
118 |
accaattataaaggtggtctaccgtagaactcacgagtagagtatcgatatccgatgacatctgatactttttctttttatatgctcaatgcattttctt |
217 |
Q |
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| T |
37705404 |
accaattataaaggtggtctaccgtagaacccacgagttgagtatcgatatccgatggcatctgatactttttctttttatatgctcaatgcattttctt |
37705305 |
T |
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| Q |
218 |
ttgtgc |
223 |
Q |
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|||||| |
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| T |
37705304 |
ttgtgc |
37705299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 37438116 - 37438001
Alignment:
| Q |
108 |
tccatgatgaaccaattataaaggtggtctaccgtagaactcacgagtagagtatcgatatccgatgacatctgatactttttctttttatatgctcaat |
207 |
Q |
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| T |
37438116 |
tccatgatgaaccgcttataaaggtggtttacagtagaactcaatagtagagtatcgatatcatatgacacttaatactttttctttttatatgctcagt |
37438017 |
T |
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| Q |
208 |
gcattttcttttgtgc |
223 |
Q |
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| T |
37438016 |
gcattttcttatgtgc |
37438001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 110 - 217
Target Start/End: Complemental strand, 37700753 - 37700646
Alignment:
| Q |
110 |
catgatgaaccaattataaaggtggtctaccgtagaactcacgagtagagtatcgatatccgatgacatctgatactttttctttttatatgctcaatgc |
209 |
Q |
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| T |
37700753 |
catgatgaaccacttataaaagtggtctacggtagaactcacgagtagagtatcaatatccgatgacacttaatatgttttctttttatgtgctcagtgc |
37700654 |
T |
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| Q |
210 |
attttctt |
217 |
Q |
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|||||||| |
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| T |
37700653 |
attttctt |
37700646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 37438243 - 37438187
Alignment:
| Q |
46 |
tagcttgcactgaacaaacatcaatcaagtcacccacttagtcgtaaatataagaaa |
102 |
Q |
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| T |
37438243 |
tagctcgcactgaacatacaccaatcaagtcaccgtcttagtcgcaaatataggaaa |
37438187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 217
Target Start/End: Original strand, 16840622 - 16840722
Alignment:
| Q |
118 |
accaattataaaggtggtctaccgtagaactcacgagtagagtatc-gatatccgatgacatctgatactttttctttttatatgctcaatgcattttct |
216 |
Q |
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|||| ||||||| ||||| ||| |||||||||||||||||||||| ||||| |||||| | |||||||||||||||||||||| | | |||||||| |
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| T |
16840622 |
accacttataaaagtggtttactttagaactcacgagtagagtatcaaatatcttatgacacttaatactttttctttttatatgcttagtacattttct |
16840721 |
T |
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| Q |
217 |
t |
217 |
Q |
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| T |
16840722 |
t |
16840722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 16840490 - 16840535
Alignment:
| Q |
57 |
gaacaaacatcaatcaagtcacccacttagtcgtaaatataagaaa |
102 |
Q |
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| T |
16840490 |
gaacaaacatcaatcaagtcatcgtcttagtcgtaaatataagaaa |
16840535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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