View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7577_1D_low_4 (Length: 464)
Name: NF7577_1D_low_4
Description: NF7577_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7577_1D_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 17 - 464
Target Start/End: Original strand, 34899363 - 34899809
Alignment:
| Q |
17 |
atcagggctatacaattcatcaatgaannnnnnnncccttttgttttgacacttctctaattgtttcttgtggtgctattttgatccttcttaaactcaa |
116 |
Q |
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| T |
34899363 |
atcagggctatacaattcatcaatgaattttttttcccttttgttttgacacttctctaattgtttcttgtggtgctatttggatccttcttaaactcaa |
34899462 |
T |
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| Q |
117 |
cttgtatttattgggatctctttttcgtttaatataatttttgacttcttcaacnnnnnnnntctatgaagaagtgtctgctaagacttacaaataatta |
216 |
Q |
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| T |
34899463 |
cttgtatttattgggatctctttttcgtttaatataatttttgacttcttcaacaaaaaaaatctatgaagaagtgtctgctaagacttacaaataatta |
34899562 |
T |
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| Q |
217 |
gttggtagctgaatgcagaaaattgaatatcgaaaatgtgtctctaaaaatgttcttagttattaggagaacctcaattagtgggtcagttgacatgttc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34899563 |
gttggtagctgaatgcagaaaattgaatatcgaaaatgtgtctctaaaaatgttcttagttattaggagaacctcaactagtgggtcagttgacatgttc |
34899662 |
T |
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| Q |
317 |
cacttggtttttatgcgtaacgtaccacacaagcatatgcaaatgttataataagataggcaagagataccaaattatcatattgtcagtgatatcatct |
416 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899663 |
cacttggtttttatgcgtaa-gtaccacacaagcatatgcaaatgttataataagataggcaagagataccaaattatcatattgtcagtgatatcatct |
34899761 |
T |
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| Q |
417 |
gcacaaattcacataaaattttgtagttggaagatacatacctttcat |
464 |
Q |
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| T |
34899762 |
gcacaaattcacataaaattttgtagttggaagatacatacctttcat |
34899809 |
T |
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